Clinical significance of cancer specific methylation of the CDO1 gene in small bowel cancer

Although small bowel cancer (SBC) is extremely rare, its prognosis is poor, and molecular mechanism of the SBC development remains unclear. The aim of our study is to elucidate whether DNA methylation of the promoter region of the cancer-specific methylation gene, cysteine dioxygenase 1 (CDO1), cont...

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Veröffentlicht in:PloS one 2019-01, Vol.14 (1), p.e0211108
Hauptverfasser: Kojima, Keita, Nakamura, Takatoshi, Ooizumi, Yosuke, Igarashi, Kazuharu, Tanaka, Toshimichi, Yokoi, Keigo, Ishii, Satoru, Nishizawa, Nobuyuki, Katoh, Hiroshi, Kosaka, Yoshimasa, Sato, Takeo, Watanabe, Masahiko, Yamashita, Keishi
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container_title PloS one
container_volume 14
creator Kojima, Keita
Nakamura, Takatoshi
Ooizumi, Yosuke
Igarashi, Kazuharu
Tanaka, Toshimichi
Yokoi, Keigo
Ishii, Satoru
Nishizawa, Nobuyuki
Katoh, Hiroshi
Kosaka, Yoshimasa
Sato, Takeo
Watanabe, Masahiko
Yamashita, Keishi
description Although small bowel cancer (SBC) is extremely rare, its prognosis is poor, and molecular mechanism of the SBC development remains unclear. The aim of our study is to elucidate whether DNA methylation of the promoter region of the cancer-specific methylation gene, cysteine dioxygenase 1 (CDO1), contributes to the carcinogenic process in SBC. The study group comprised patients with 53 patients with SBC, 107 colorectal cancer (CRC), and other rare tumors of the small intestine such as 4 malignant lymphomas, 2 leiomyosarcomas, and 9 gastrointestinal stromal tumors. We analyzed the extent of methylation in each tissue using quantitative TaqMan methylation-specific PCR for CDO1. Significantly higher CDO1 methylation was observed in cancer tissues compared with non-cancerous mucosa of the small intestine (ROC = 0.96). Among the various clinicopathological factors, positive correlation of CDO1 methylation with tumor diameter was observed (R = 0.31, p = 0.03), and the CDO1 methylation level was a possible prognostic factor for relapse-free survival (p = 0.09). Compared with CRC, SBC had a significantly poorer prognosis (p = 0.007) and displayed a significantly higher CDO1 methylation level (p < 0.0001). Intriguingly, especially in pStage I/II, there were robust prognostic difference between SBC and CRC (p = 0.08 / p < 0.0001), which may reflect CDO1 methylation status (p = 0.02 / p = 0.001). Among small bowel tumors, CDO1 methylation in SBC was higher in order of malignant lymphoma, cancer, and leiomyosarcoma/GIST (p = 0.002) by ANOVA. The CDO1 gene shows extremely cancer-specific hypermethylation, and it can be a prognostic marker in SBC.
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The aim of our study is to elucidate whether DNA methylation of the promoter region of the cancer-specific methylation gene, cysteine dioxygenase 1 (CDO1), contributes to the carcinogenic process in SBC. The study group comprised patients with 53 patients with SBC, 107 colorectal cancer (CRC), and other rare tumors of the small intestine such as 4 malignant lymphomas, 2 leiomyosarcomas, and 9 gastrointestinal stromal tumors. We analyzed the extent of methylation in each tissue using quantitative TaqMan methylation-specific PCR for CDO1. Significantly higher CDO1 methylation was observed in cancer tissues compared with non-cancerous mucosa of the small intestine (ROC = 0.96). Among the various clinicopathological factors, positive correlation of CDO1 methylation with tumor diameter was observed (R = 0.31, p = 0.03), and the CDO1 methylation level was a possible prognostic factor for relapse-free survival (p = 0.09). Compared with CRC, SBC had a significantly poorer prognosis (p = 0.007) and displayed a significantly higher CDO1 methylation level (p &lt; 0.0001). Intriguingly, especially in pStage I/II, there were robust prognostic difference between SBC and CRC (p = 0.08 / p &lt; 0.0001), which may reflect CDO1 methylation status (p = 0.02 / p = 0.001). Among small bowel tumors, CDO1 methylation in SBC was higher in order of malignant lymphoma, cancer, and leiomyosarcoma/GIST (p = 0.002) by ANOVA. 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The aim of our study is to elucidate whether DNA methylation of the promoter region of the cancer-specific methylation gene, cysteine dioxygenase 1 (CDO1), contributes to the carcinogenic process in SBC. The study group comprised patients with 53 patients with SBC, 107 colorectal cancer (CRC), and other rare tumors of the small intestine such as 4 malignant lymphomas, 2 leiomyosarcomas, and 9 gastrointestinal stromal tumors. We analyzed the extent of methylation in each tissue using quantitative TaqMan methylation-specific PCR for CDO1. Significantly higher CDO1 methylation was observed in cancer tissues compared with non-cancerous mucosa of the small intestine (ROC = 0.96). Among the various clinicopathological factors, positive correlation of CDO1 methylation with tumor diameter was observed (R = 0.31, p = 0.03), and the CDO1 methylation level was a possible prognostic factor for relapse-free survival (p = 0.09). 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Medical Complete (Alumni)</collection><collection>Materials Science Database</collection><collection>Nursing &amp; Allied Health Database (Alumni Edition)</collection><collection>Meteorological &amp; Geoastrophysical Abstracts - Academic</collection><collection>ProQuest Engineering Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Nursing &amp; Allied Health Premium</collection><collection>Advanced Technologies &amp; Aerospace Database</collection><collection>ProQuest Advanced Technologies &amp; Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Materials Science Collection</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Engineering Collection</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kojima, Keita</au><au>Nakamura, Takatoshi</au><au>Ooizumi, Yosuke</au><au>Igarashi, Kazuharu</au><au>Tanaka, Toshimichi</au><au>Yokoi, Keigo</au><au>Ishii, Satoru</au><au>Nishizawa, Nobuyuki</au><au>Katoh, Hiroshi</au><au>Kosaka, Yoshimasa</au><au>Sato, Takeo</au><au>Watanabe, Masahiko</au><au>Yamashita, Keishi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Clinical significance of cancer specific methylation of the CDO1 gene in small bowel cancer</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2019-01-24</date><risdate>2019</risdate><volume>14</volume><issue>1</issue><spage>e0211108</spage><pages>e0211108-</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Although small bowel cancer (SBC) is extremely rare, its prognosis is poor, and molecular mechanism of the SBC development remains unclear. The aim of our study is to elucidate whether DNA methylation of the promoter region of the cancer-specific methylation gene, cysteine dioxygenase 1 (CDO1), contributes to the carcinogenic process in SBC. The study group comprised patients with 53 patients with SBC, 107 colorectal cancer (CRC), and other rare tumors of the small intestine such as 4 malignant lymphomas, 2 leiomyosarcomas, and 9 gastrointestinal stromal tumors. We analyzed the extent of methylation in each tissue using quantitative TaqMan methylation-specific PCR for CDO1. Significantly higher CDO1 methylation was observed in cancer tissues compared with non-cancerous mucosa of the small intestine (ROC = 0.96). Among the various clinicopathological factors, positive correlation of CDO1 methylation with tumor diameter was observed (R = 0.31, p = 0.03), and the CDO1 methylation level was a possible prognostic factor for relapse-free survival (p = 0.09). Compared with CRC, SBC had a significantly poorer prognosis (p = 0.007) and displayed a significantly higher CDO1 methylation level (p &lt; 0.0001). Intriguingly, especially in pStage I/II, there were robust prognostic difference between SBC and CRC (p = 0.08 / p &lt; 0.0001), which may reflect CDO1 methylation status (p = 0.02 / p = 0.001). Among small bowel tumors, CDO1 methylation in SBC was higher in order of malignant lymphoma, cancer, and leiomyosarcoma/GIST (p = 0.002) by ANOVA. The CDO1 gene shows extremely cancer-specific hypermethylation, and it can be a prognostic marker in SBC.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>30677088</pmid><doi>10.1371/journal.pone.0211108</doi><tpages>e0211108</tpages><orcidid>https://orcid.org/0000-0002-8492-0300</orcidid><oa>free_for_read</oa></addata></record>
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subjects Aged
Analysis
Biology and life sciences
Cancer
Carcinogenesis
Carcinogens
Cell Line, Tumor
Chemotherapy
Clinical significance
Colorectal cancer
Colorectal carcinoma
Colorectal Neoplasms - enzymology
Colorectal Neoplasms - genetics
Colorectal Neoplasms - mortality
Colorectal Neoplasms - pathology
Cysteine dioxygenase
Cysteine Dioxygenase - genetics
Cysteine Dioxygenase - metabolism
Deoxyribonucleic acid
Development and progression
Disease-Free Survival
DNA
DNA Methylation
DNA, Neoplasm - genetics
DNA, Neoplasm - metabolism
Esophagus
Female
Gallbladder
Gastric cancer
Gastrointestinal cancer
Gastrointestinal Stromal Tumors - enzymology
Gastrointestinal Stromal Tumors - genetics
Gastrointestinal Stromal Tumors - mortality
Gastrointestinal Stromal Tumors - pathology
Genes
Genetic aspects
Humans
Leiomyosarcoma - enzymology
Leiomyosarcoma - genetics
Leiomyosarcoma - mortality
Leiomyosarcoma - pathology
Lymphoma
Lymphoma - enzymology
Lymphoma - genetics
Lymphoma - mortality
Lymphoma - pathology
Male
Medical prognosis
Medicine
Medicine and Health Sciences
Middle Aged
Mucosa
Mutation
Neoplasm Proteins - genetics
Neoplasm Proteins - metabolism
Patients
Physical Sciences
Prognosis
Proteins
R&D
Research & development
Research and Analysis Methods
Retrospective Studies
Small intestine
Small intestine cancer
Stomach cancer
Surgery
Survival Rate
Tissues
Tumors
Variance analysis
title Clinical significance of cancer specific methylation of the CDO1 gene in small bowel cancer
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