Ion Torrent and lllumina, two complementary RNA-seq platforms for constructing the holm oak (Quercus ilex) transcriptome

Transcriptome analysis is widely used in plant biology research to explore gene expression across a large variety of biological contexts such as those related to environmental stress and plant-pathogen interaction. Currently, next generation sequencing platforms are used to obtain a high amount of r...

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Veröffentlicht in:	PloS one 2019-01, Vol.14 (1), p.e0210356-e0210356
Hauptverfasser:	Guerrero-Sanchez, Victor M, Maldonado-Alconada, Ana M, Amil-Ruiz, Francisco, Verardi, Andrea, Jorrín-Novo, Jesús V, Rey, María-Dolores
Format:	Artikel
Sprache:	eng
Schlagworte:	Agroforestry Algorithms Analysis Assemblies Biochemistry Bioinformatics Biological activity Biology and Life Sciences Climate change Deoxyribonucleic acid DNA Ecosystems Environmental stress Error correction & detection Gene expression Gene Expression Profiling - methods Gene Expression Profiling - statistics & numerical data Gene Ontology Gene sequencing Genome, Plant Genomes Genomic analysis High-Throughput Nucleotide Sequencing - methods High-Throughput Nucleotide Sequencing - statistics & numerical data Molecular biology Molecular Sequence Annotation Next-generation sequencing Oak Plant Proteins - genetics Platforms Proteins Proteome - genetics Proteomics Quercus - classification Quercus - genetics Quercus ilex Research and analysis methods Ribonucleic acid RNA RNA, Plant - genetics Sequence Alignment Sequence Analysis, RNA - methods Sequence Analysis, RNA - statistics & numerical data Species Specificity Transcriptome Trees - genetics
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