Phylogenetic relationships in the genus Avena based on the nuclear Pgk1 gene

The phylogenetic relationships among 76 Avena taxa, representing 14 diploids, eight tetraploids, and four hexaploids were investigated by using the nuclear plastid 3-phosphoglycerate kinase gene (Pgk1). A significant deletion (131 bp) was detected in all the C genome homoeologues which reconfirmed a...

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Veröffentlicht in:PloS one 2018-11, Vol.13 (11), p.e0200047-e0200047
Hauptverfasser: Peng, Yuanying, Zhou, Pingping, Zhao, Jun, Li, Junzhuo, Lai, Shikui, Tinker, Nicholas A, Liao, Shu, Yan, Honghai
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container_title PloS one
container_volume 13
creator Peng, Yuanying
Zhou, Pingping
Zhao, Jun
Li, Junzhuo
Lai, Shikui
Tinker, Nicholas A
Liao, Shu
Yan, Honghai
description The phylogenetic relationships among 76 Avena taxa, representing 14 diploids, eight tetraploids, and four hexaploids were investigated by using the nuclear plastid 3-phosphoglycerate kinase gene (Pgk1). A significant deletion (131 bp) was detected in all the C genome homoeologues which reconfirmed a major structural divergence between the A and C genomes. Phylogenetic analysis indicated the Cp genome is more closely related to the polyploid species than is the Cv genome. Two haplotypes of Pgk1 gene were obtained from most of the AB genome tetraploids. Both types of the barbata group showed a close relationship with the As genome diploid species, supporting the hypothesis that both the A and B genomes are derived from an As genome. Two haplotypes were also detected in A. agadiriana, which showed close relationships with the As genome diploid and the Ac genome diploid, respectively, emphasizing the important role of the Ac genome in the evolution of A. agadiriana. Three homoeologues of the Pgk1 gene were detected in five hexaploid accessions. The homoeologues that might represent the D genome were tightly clustered with the tetraploids A. maroccana and A. murphyi, but did not show a close relationship with any extant diploid species.
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subjects Biology and Life Sciences
Chromosomes
Collaboration
Computer and Information Sciences
Diploids
Divergence
Evolution
Gene deletion
Genes
Genetics
Genomes
Goat grass
Haplotypes
Hybridization
Hypotheses
Hypothesis testing
Molecular biology
Morphology
Oats
Phosphoglycerate kinase
Phylogenetics
Phylogeny
Polyploidy
R&D
Research & development
Research and Analysis Methods
Species
title Phylogenetic relationships in the genus Avena based on the nuclear Pgk1 gene
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