Null mutants of individual RABA genes impact the proportion of different cell wall components in stem tissue of Arabidopsis thaliana
In Arabidopsis, and other plants, the RABA GTPases (orthologous to the Rab11a of mammals) have expanded in number and diversity and have been shown to belong to eight sub clades, some of which have been implicated in controlling vesicles that traffic cell wall polymers and enzymes that synthesise or...
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| creator | Lunn, Daniel Gaddipati, Sanyasi R Tucker, Gregory A Lycett, Grantley W |
| description | In Arabidopsis, and other plants, the RABA GTPases (orthologous to the Rab11a of mammals) have expanded in number and diversity and have been shown to belong to eight sub clades, some of which have been implicated in controlling vesicles that traffic cell wall polymers and enzymes that synthesise or modify them to the cell wall. In order to investigate this, we have investigated whether T-DNA insertion knockouts of individual RABA genes belonging to different sub clades, impact on the composition of the plant cell wall. Single gene knockouts of the RABA1, RABA2 and RABA4 sub clades primarily affected the percentage composition of pectin, cellulose and hemicellulose within the cell wall, respectively, despite having no obvious phenotype in the whole plant. We hypothesise that vesicles carrying specific types of cargoes from the Golgi to the cell surface may be regulated by particular sub types of RABA proteins, a finding that could have wider implications for how trafficking systems work and could be a useful tool in cell wall research and other fields of plant biology. |
| doi_str_mv | 10.1371/journal.pone.0075724 |
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In order to investigate this, we have investigated whether T-DNA insertion knockouts of individual RABA genes belonging to different sub clades, impact on the composition of the plant cell wall. Single gene knockouts of the RABA1, RABA2 and RABA4 sub clades primarily affected the percentage composition of pectin, cellulose and hemicellulose within the cell wall, respectively, despite having no obvious phenotype in the whole plant. We hypothesise that vesicles carrying specific types of cargoes from the Golgi to the cell surface may be regulated by particular sub types of RABA proteins, a finding that could have wider implications for how trafficking systems work and could be a useful tool in cell wall research and other fields of plant biology.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0075724</identifier><identifier>PMID: 24124508</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Arabidopsis ; Arabidopsis - genetics ; Arabidopsis - metabolism ; Arabidopsis Proteins - genetics ; Arabidopsis Proteins - metabolism ; Arabidopsis thaliana ; Biopolymers ; Cell surface ; Cell Wall - genetics ; Cell Wall - metabolism ; Cell walls ; Cellulose ; Deoxyribonucleic acid ; Discriminant analysis ; DNA ; Enzymes ; Fourier transforms ; Gene Expression Regulation, Plant ; Genes ; Golgi cells ; Hemicellulose ; Localization ; Mammals ; Multivariate analysis ; Mutants ; Mutation ; Particle size ; Pectin ; Phenotypes ; Plant physiology ; Plants, Genetically Modified - genetics ; Plants, Genetically Modified - metabolism ; Polymers ; Proteins ; Spectrum analysis ; T-DNA ; Traffic control ; Vesicles</subject><ispartof>PloS one, 2013-10, Vol.8 (10), p.e75724-e75724</ispartof><rights>COPYRIGHT 2013 Public Library of Science</rights><rights>2013 Lunn et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2013 Lunn et al 2013 Lunn et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c758t-f3313e3fd6b304ed41ca75ba843ef4969f5a84cb4a22eda9dea937a57badf1ce3</citedby><cites>FETCH-LOGICAL-c758t-f3313e3fd6b304ed41ca75ba843ef4969f5a84cb4a22eda9dea937a57badf1ce3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3790814/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3790814/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2102,2928,23866,27924,27925,53791,53793,79600,79601</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24124508$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Blazquez, Miguel A.</contributor><creatorcontrib>Lunn, Daniel</creatorcontrib><creatorcontrib>Gaddipati, Sanyasi R</creatorcontrib><creatorcontrib>Tucker, Gregory A</creatorcontrib><creatorcontrib>Lycett, Grantley W</creatorcontrib><title>Null mutants of individual RABA genes impact the proportion of different cell wall components in stem tissue of Arabidopsis thaliana</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>In Arabidopsis, and other plants, the RABA GTPases (orthologous to the Rab11a of mammals) have expanded in number and diversity and have been shown to belong to eight sub clades, some of which have been implicated in controlling vesicles that traffic cell wall polymers and enzymes that synthesise or modify them to the cell wall. In order to investigate this, we have investigated whether T-DNA insertion knockouts of individual RABA genes belonging to different sub clades, impact on the composition of the plant cell wall. Single gene knockouts of the RABA1, RABA2 and RABA4 sub clades primarily affected the percentage composition of pectin, cellulose and hemicellulose within the cell wall, respectively, despite having no obvious phenotype in the whole plant. We hypothesise that vesicles carrying specific types of cargoes from the Golgi to the cell surface may be regulated by particular sub types of RABA proteins, a finding that could have wider implications for how trafficking systems work and could be a useful tool in cell wall research and other fields of plant biology.</description><subject>Arabidopsis</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - metabolism</subject><subject>Arabidopsis Proteins - genetics</subject><subject>Arabidopsis Proteins - metabolism</subject><subject>Arabidopsis thaliana</subject><subject>Biopolymers</subject><subject>Cell surface</subject><subject>Cell Wall - genetics</subject><subject>Cell Wall - metabolism</subject><subject>Cell walls</subject><subject>Cellulose</subject><subject>Deoxyribonucleic acid</subject><subject>Discriminant analysis</subject><subject>DNA</subject><subject>Enzymes</subject><subject>Fourier transforms</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes</subject><subject>Golgi cells</subject><subject>Hemicellulose</subject><subject>Localization</subject><subject>Mammals</subject><subject>Multivariate analysis</subject><subject>Mutants</subject><subject>Mutation</subject><subject>Particle size</subject><subject>Pectin</subject><subject>Phenotypes</subject><subject>Plant physiology</subject><subject>Plants, Genetically Modified - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lunn, Daniel</au><au>Gaddipati, Sanyasi R</au><au>Tucker, Gregory A</au><au>Lycett, Grantley W</au><au>Blazquez, Miguel A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Null mutants of individual RABA genes impact the proportion of different cell wall components in stem tissue of Arabidopsis thaliana</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2013-10-04</date><risdate>2013</risdate><volume>8</volume><issue>10</issue><spage>e75724</spage><epage>e75724</epage><pages>e75724-e75724</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>In Arabidopsis, and other plants, the RABA GTPases (orthologous to the Rab11a of mammals) have expanded in number and diversity and have been shown to belong to eight sub clades, some of which have been implicated in controlling vesicles that traffic cell wall polymers and enzymes that synthesise or modify them to the cell wall. In order to investigate this, we have investigated whether T-DNA insertion knockouts of individual RABA genes belonging to different sub clades, impact on the composition of the plant cell wall. Single gene knockouts of the RABA1, RABA2 and RABA4 sub clades primarily affected the percentage composition of pectin, cellulose and hemicellulose within the cell wall, respectively, despite having no obvious phenotype in the whole plant. We hypothesise that vesicles carrying specific types of cargoes from the Golgi to the cell surface may be regulated by particular sub types of RABA proteins, a finding that could have wider implications for how trafficking systems work and could be a useful tool in cell wall research and other fields of plant biology.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>24124508</pmid><doi>10.1371/journal.pone.0075724</doi><tpages>e75724</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Arabidopsis Arabidopsis - genetics Arabidopsis - metabolism Arabidopsis Proteins - genetics Arabidopsis Proteins - metabolism Arabidopsis thaliana Biopolymers Cell surface Cell Wall - genetics Cell Wall - metabolism Cell walls Cellulose Deoxyribonucleic acid Discriminant analysis DNA Enzymes Fourier transforms Gene Expression Regulation, Plant Genes Golgi cells Hemicellulose Localization Mammals Multivariate analysis Mutants Mutation Particle size Pectin Phenotypes Plant physiology Plants, Genetically Modified - genetics Plants, Genetically Modified - metabolism Polymers Proteins Spectrum analysis T-DNA Traffic control Vesicles |
| title | Null mutants of individual RABA genes impact the proportion of different cell wall components in stem tissue of Arabidopsis thaliana |
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