High-throughput sequencing of microbial community diversity in soil, grapes, leaves, grape juice and wine of grapevine from China
In this study Illumina MiSeq was performed to investigate microbial diversity in soil, leaves, grape, grape juice and wine. A total of 1,043,102 fungal Internal Transcribed Spacer (ITS) reads and 2,422,188 high quality bacterial 16S rDNA sequences were used for taxonomic classification, revealed fiv...
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| creator | Wei, Yu-Jie Wu, Yun Yan, Yin-Zhuo Zou, Wan Xue, Jie Ma, Wen-Rui Wang, Wei Tian, Ge Wang, Li-Ye |
| description | In this study Illumina MiSeq was performed to investigate microbial diversity in soil, leaves, grape, grape juice and wine. A total of 1,043,102 fungal Internal Transcribed Spacer (ITS) reads and 2,422,188 high quality bacterial 16S rDNA sequences were used for taxonomic classification, revealed five fungal and eight bacterial phyla. At the genus level, the dominant fungi were Ascomycota, Sordariales, Tetracladium and Geomyces in soil, Aureobasidium and Pleosporaceae in grapes leaves, Aureobasidium in grape and grape juice. The dominant bacteria were Kaistobacter, Arthrobacter, Skermanella and Sphingomonas in soil, Pseudomonas, Acinetobacter and Kaistobacter in grape and grapes leaves, and Oenococcus in grape juice and wine. Principal coordinate analysis showed structural separation between the composition of fungi and bacteria in all samples. This is the first study to understand microbiome population in soil, grape, grapes leaves, grape juice and wine in Xinjiang through High-throughput Sequencing and identify microorganisms like Saccharomyces cerevisiae and Oenococcus spp. that may contribute to the quality and flavor of wine. |
| doi_str_mv | 10.1371/journal.pone.0193097 |
| format | Article |
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A total of 1,043,102 fungal Internal Transcribed Spacer (ITS) reads and 2,422,188 high quality bacterial 16S rDNA sequences were used for taxonomic classification, revealed five fungal and eight bacterial phyla. At the genus level, the dominant fungi were Ascomycota, Sordariales, Tetracladium and Geomyces in soil, Aureobasidium and Pleosporaceae in grapes leaves, Aureobasidium in grape and grape juice. The dominant bacteria were Kaistobacter, Arthrobacter, Skermanella and Sphingomonas in soil, Pseudomonas, Acinetobacter and Kaistobacter in grape and grapes leaves, and Oenococcus in grape juice and wine. Principal coordinate analysis showed structural separation between the composition of fungi and bacteria in all samples. 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This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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sequencing of microbial community diversity in soil, grapes, leaves, grape juice and wine of grapevine from China</title><author>Wei, Yu-Jie ; Wu, Yun ; Yan, Yin-Zhuo ; Zou, Wan ; Xue, Jie ; Ma, Wen-Rui ; Wang, Wei ; Tian, Ge ; Wang, Li-Ye</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c758t-40ef0089d0b79590af40906593b24fb0f79d141e251a80927d7f4904dd8810ab3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Arthrobacter</topic><topic>Aspergillus</topic><topic>Bacteria</topic><topic>Berries</topic><topic>Biodiversity</topic><topic>Biology and Life Sciences</topic><topic>Ecology and Environmental Sciences</topic><topic>Fermentation</topic><topic>Flavor</topic><topic>Flowers & plants</topic><topic>Food science</topic><topic>Fungi</topic><topic>Genetic aspects</topic><topic>Grapes</topic><topic>Identification and 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Wen-Rui</au><au>Wang, Wei</au><au>Tian, Ge</au><au>Wang, Li-Ye</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>High-throughput sequencing of microbial community diversity in soil, grapes, leaves, grape juice and wine of grapevine from China</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2018-03-22</date><risdate>2018</risdate><volume>13</volume><issue>3</issue><spage>e0193097</spage><epage>e0193097</epage><pages>e0193097-e0193097</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>In this study Illumina MiSeq was performed to investigate microbial diversity in soil, leaves, grape, grape juice and wine. A total of 1,043,102 fungal Internal Transcribed Spacer (ITS) reads and 2,422,188 high quality bacterial 16S rDNA sequences were used for taxonomic classification, revealed five fungal and eight bacterial phyla. At the genus level, the dominant fungi were Ascomycota, Sordariales, Tetracladium and Geomyces in soil, Aureobasidium and Pleosporaceae in grapes leaves, Aureobasidium in grape and grape juice. The dominant bacteria were Kaistobacter, Arthrobacter, Skermanella and Sphingomonas in soil, Pseudomonas, Acinetobacter and Kaistobacter in grape and grapes leaves, and Oenococcus in grape juice and wine. Principal coordinate analysis showed structural separation between the composition of fungi and bacteria in all samples. This is the first study to understand microbiome population in soil, grape, grapes leaves, grape juice and wine in Xinjiang through High-throughput Sequencing and identify microorganisms like Saccharomyces cerevisiae and Oenococcus spp. that may contribute to the quality and flavor of wine.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>29565999</pmid><doi>10.1371/journal.pone.0193097</doi><tpages>e0193097</tpages><orcidid>https://orcid.org/0000-0003-3924-7214</orcidid><oa>free_for_read</oa></addata></record> |
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| source | DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Free Full-Text Journals in Chemistry; Public Library of Science (PLoS) |
| subjects | Arthrobacter Aspergillus Bacteria Berries Biodiversity Biology and Life Sciences Ecology and Environmental Sciences Fermentation Flavor Flowers & plants Food science Fungi Genetic aspects Grapes Identification and classification Juices Leaves Medicine and Health Sciences Microbial colonies Microbiological research Microbiomes Microorganisms Next-generation sequencing Pharmacy Plant diseases Population studies Pseudomonas syringae Research and Analysis Methods rRNA 16S Saccharomyces cerevisiae Soil investigations Soil microbiology Soils Temperature effects Vineyards Vitaceae Vitis vinifera Wine Wineries & vineyards Wines Yeast |
| title | High-throughput sequencing of microbial community diversity in soil, grapes, leaves, grape juice and wine of grapevine from China |
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