Genetics and Molecular Mapping of Black Rot Resistance Locus Xca1bc on Chromosome B-7 in Ethiopian Mustard (Brassica carinata A. Braun)
Black rot caused by Xanthomonas campestris pv. campestris (Pam.) Dowson is the most destructive disease of cauliflower causing huge loss to the farmers throughout the world. Since there are limited sources of resistance to black rot in B. oleracea (C genome Brassica), exploration of A and B genomes...
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| description | Black rot caused by Xanthomonas campestris pv. campestris (Pam.) Dowson is the most destructive disease of cauliflower causing huge loss to the farmers throughout the world. Since there are limited sources of resistance to black rot in B. oleracea (C genome Brassica), exploration of A and B genomes of Brassica was planned as these were thought to be potential reservoirs of black rot resistance gene(s). In our search for new gene(s) for black rot resistance, F2 mapping population was developed in Brassica carinata (BBCC) by crossing NPC-17, a susceptible genotype with NPC-9, a resistant genotype. Out of 364 Intron length polymorphic markers and microsatellite primers used in this study, 41 distinguished the parental lines. However, resistant and susceptible bulks could be distinguished by three markers At1g70610, SSR Na14-G02 and At1g71865 which were used for genotyping of F2 mapping population. These markers were placed along the resistance gene, according to order, covering a distance of 36.30 cM. Intron length polymorphic markers At1g70610 and At1g71865 were found to be linked to black rot resistance locus (Xca1bc) at 6.2 and 12.8 cM distance, respectively. This is the first report of identification of markers linked to Xca1bc locus in Brassica carinata on B-7 linkage group. Intron length polymorphic markers provided a novel and attractive option for marker assisted selection due to high cross transferability and cost effectiveness for marker assisted alien gene introgression into cauliflower. |
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Braun)</title><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><source>Public Library of Science (PLoS)</source><creator>Sharma, Brij Bihari ; Kalia, Pritam ; Yadava, Devendra Kumar ; Singh, Dinesh ; Sharma, Tilak Raj</creator><contributor>Prasad, Manoj</contributor><creatorcontrib>Sharma, Brij Bihari ; Kalia, Pritam ; Yadava, Devendra Kumar ; Singh, Dinesh ; Sharma, Tilak Raj ; Prasad, Manoj</creatorcontrib><description>Black rot caused by Xanthomonas campestris pv. campestris (Pam.) Dowson is the most destructive disease of cauliflower causing huge loss to the farmers throughout the world. Since there are limited sources of resistance to black rot in B. oleracea (C genome Brassica), exploration of A and B genomes of Brassica was planned as these were thought to be potential reservoirs of black rot resistance gene(s). In our search for new gene(s) for black rot resistance, F2 mapping population was developed in Brassica carinata (BBCC) by crossing NPC-17, a susceptible genotype with NPC-9, a resistant genotype. Out of 364 Intron length polymorphic markers and microsatellite primers used in this study, 41 distinguished the parental lines. However, resistant and susceptible bulks could be distinguished by three markers At1g70610, SSR Na14-G02 and At1g71865 which were used for genotyping of F2 mapping population. These markers were placed along the resistance gene, according to order, covering a distance of 36.30 cM. Intron length polymorphic markers At1g70610 and At1g71865 were found to be linked to black rot resistance locus (Xca1bc) at 6.2 and 12.8 cM distance, respectively. This is the first report of identification of markers linked to Xca1bc locus in Brassica carinata on B-7 linkage group. Intron length polymorphic markers provided a novel and attractive option for marker assisted selection due to high cross transferability and cost effectiveness for marker assisted alien gene introgression into cauliflower.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0152290</identifier><identifier>PMID: 27023128</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Agricultural economics ; Biology and Life Sciences ; Black rot ; Brassica ; Brassica carinata ; Brassica juncea ; Brassica napus ; Brassica oleracea ; Brassicaceae ; Chromosome Mapping ; Chromosome Segregation - genetics ; Chromosomes, Plant - genetics ; Cost effectiveness ; Crop diseases ; Crosses, Genetic ; Disease resistance (Plants) ; Disease Resistance - genetics ; Diseases and pests ; Gene mapping ; Genes ; Genes, Plant ; Genetic aspects ; Genetic Linkage ; Genetic Loci ; Genetic Markers ; Genetics ; Genomes ; Genomics ; Genotype ; Genotyping ; Laboratories ; Loci ; Mapping ; Markers ; Mustard ; Mustard (Condiment) ; Mustard Plant - genetics ; Mustard Plant - immunology ; Mustard Plant - microbiology ; Phenotype ; Plant Diseases - genetics ; Plant Diseases - immunology ; Plant Diseases - microbiology ; Primers ; Research and Analysis Methods ; Science ; Xanthomonas campestris ; Xanthomonas campestris - physiology</subject><ispartof>PloS one, 2016-03, Vol.11 (3), p.e0152290-e0152290</ispartof><rights>COPYRIGHT 2016 Public Library of Science</rights><rights>2016 Sharma et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2016 Sharma et al 2016 Sharma et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-d2b668a769ae0cea3e7b824991cc7cda34e0c38034a89dcb5b4b1bd023c86bb53</citedby><cites>FETCH-LOGICAL-c692t-d2b668a769ae0cea3e7b824991cc7cda34e0c38034a89dcb5b4b1bd023c86bb53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4811439/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4811439/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79343,79344</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27023128$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Prasad, Manoj</contributor><creatorcontrib>Sharma, Brij Bihari</creatorcontrib><creatorcontrib>Kalia, Pritam</creatorcontrib><creatorcontrib>Yadava, Devendra Kumar</creatorcontrib><creatorcontrib>Singh, Dinesh</creatorcontrib><creatorcontrib>Sharma, Tilak Raj</creatorcontrib><title>Genetics and Molecular Mapping of Black Rot Resistance Locus Xca1bc on Chromosome B-7 in Ethiopian Mustard (Brassica carinata A. Braun)</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Black rot caused by Xanthomonas campestris pv. campestris (Pam.) Dowson is the most destructive disease of cauliflower causing huge loss to the farmers throughout the world. Since there are limited sources of resistance to black rot in B. oleracea (C genome Brassica), exploration of A and B genomes of Brassica was planned as these were thought to be potential reservoirs of black rot resistance gene(s). In our search for new gene(s) for black rot resistance, F2 mapping population was developed in Brassica carinata (BBCC) by crossing NPC-17, a susceptible genotype with NPC-9, a resistant genotype. Out of 364 Intron length polymorphic markers and microsatellite primers used in this study, 41 distinguished the parental lines. However, resistant and susceptible bulks could be distinguished by three markers At1g70610, SSR Na14-G02 and At1g71865 which were used for genotyping of F2 mapping population. 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Intron length polymorphic markers provided a novel and attractive option for marker assisted selection due to high cross transferability and cost effectiveness for marker assisted alien gene introgression into cauliflower.</description><subject>Agricultural economics</subject><subject>Biology and Life Sciences</subject><subject>Black rot</subject><subject>Brassica</subject><subject>Brassica carinata</subject><subject>Brassica juncea</subject><subject>Brassica napus</subject><subject>Brassica oleracea</subject><subject>Brassicaceae</subject><subject>Chromosome Mapping</subject><subject>Chromosome Segregation - genetics</subject><subject>Chromosomes, Plant - genetics</subject><subject>Cost effectiveness</subject><subject>Crop diseases</subject><subject>Crosses, Genetic</subject><subject>Disease resistance (Plants)</subject><subject>Disease Resistance - genetics</subject><subject>Diseases and pests</subject><subject>Gene mapping</subject><subject>Genes</subject><subject>Genes, Plant</subject><subject>Genetic aspects</subject><subject>Genetic Linkage</subject><subject>Genetic Loci</subject><subject>Genetic Markers</subject><subject>Genetics</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Genotype</subject><subject>Genotyping</subject><subject>Laboratories</subject><subject>Loci</subject><subject>Mapping</subject><subject>Markers</subject><subject>Mustard</subject><subject>Mustard (Condiment)</subject><subject>Mustard Plant - genetics</subject><subject>Mustard Plant - immunology</subject><subject>Mustard Plant - microbiology</subject><subject>Phenotype</subject><subject>Plant Diseases - genetics</subject><subject>Plant Diseases - immunology</subject><subject>Plant Diseases - microbiology</subject><subject>Primers</subject><subject>Research and Analysis Methods</subject><subject>Science</subject><subject>Xanthomonas campestris</subject><subject>Xanthomonas campestris - physiology</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNqNk9tuEzEQhlcIREvhDRBYQkLtRcL6sKcbpKQqJVKiSuEg7qxZ72zisLEXexfBE_DaOE1aZVEv0F54Nf7-3zNjTxS9pPGY8oy-29jeGWjGrTU4jmnCWBE_ik5pwdkoZTF_fPR_Ej3zfhPHCc_T9Gl0wrKYccry0-jPNRrstPIETEUWtkHVN-DIAtpWmxWxNZk2oL6Tpe3IEr32HRiFZG5V78k3BbRUxBpyuXZ2a73dIpmOMqINuerW2rYaDFn0QeQqcj514L1WQBQ4baADMhmTEOzNxfPoSQ2NxxeH9Sz68uHq8-XH0fzmenY5mY9UWrBuVLEyTXPI0gIwVggcszJnoiioUpmqgIsQ5nnMBeRFpcqkFCUtq1CtytOyTPhZ9Hrv2zbWy0MPvaRFnrIkp4IFYrYnKgsb2Tq9BfdbWtDyNmDdSoILHWtQYlHVWCLNoaqFQCwykaLiKQtpihjj4PX-cFpfbrFSaDoHzcB0uGP0Wq7sTylySgUvgsH5wcDZHz36Tm61V9g0YND2Ie8sy0SeJLd5v_kHfbi6A7WCUIA2tQ3nqp2pnIiEi_AwRBao8QNU-CrcahUeXK1DfCC4GAgC0-GvbgW993L2afn_7M3XIfv2iF0jNN3a26bvtDV-CIo9qJz13mF932Qay9283HVD7uZFHuYlyF4dX9C96G5A-F-syA_x</recordid><startdate>20160329</startdate><enddate>20160329</enddate><creator>Sharma, Brij Bihari</creator><creator>Kalia, Pritam</creator><creator>Yadava, Devendra Kumar</creator><creator>Singh, Dinesh</creator><creator>Sharma, Tilak Raj</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20160329</creationdate><title>Genetics and Molecular Mapping of Black Rot Resistance Locus Xca1bc on Chromosome B-7 in Ethiopian Mustard (Brassica carinata A. Braun)</title><author>Sharma, Brij Bihari ; Kalia, Pritam ; Yadava, Devendra Kumar ; Singh, Dinesh ; Sharma, Tilak Raj</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c692t-d2b668a769ae0cea3e7b824991cc7cda34e0c38034a89dcb5b4b1bd023c86bb53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Agricultural economics</topic><topic>Biology and Life Sciences</topic><topic>Black rot</topic><topic>Brassica</topic><topic>Brassica carinata</topic><topic>Brassica juncea</topic><topic>Brassica napus</topic><topic>Brassica oleracea</topic><topic>Brassicaceae</topic><topic>Chromosome Mapping</topic><topic>Chromosome Segregation - genetics</topic><topic>Chromosomes, Plant - genetics</topic><topic>Cost effectiveness</topic><topic>Crop diseases</topic><topic>Crosses, Genetic</topic><topic>Disease resistance (Plants)</topic><topic>Disease Resistance - genetics</topic><topic>Diseases and pests</topic><topic>Gene mapping</topic><topic>Genes</topic><topic>Genes, Plant</topic><topic>Genetic aspects</topic><topic>Genetic Linkage</topic><topic>Genetic Loci</topic><topic>Genetic Markers</topic><topic>Genetics</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Genotype</topic><topic>Genotyping</topic><topic>Laboratories</topic><topic>Loci</topic><topic>Mapping</topic><topic>Markers</topic><topic>Mustard</topic><topic>Mustard (Condiment)</topic><topic>Mustard Plant - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sharma, Brij Bihari</au><au>Kalia, Pritam</au><au>Yadava, Devendra Kumar</au><au>Singh, Dinesh</au><au>Sharma, Tilak Raj</au><au>Prasad, Manoj</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetics and Molecular Mapping of Black Rot Resistance Locus Xca1bc on Chromosome B-7 in Ethiopian Mustard (Brassica carinata A. Braun)</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2016-03-29</date><risdate>2016</risdate><volume>11</volume><issue>3</issue><spage>e0152290</spage><epage>e0152290</epage><pages>e0152290-e0152290</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Black rot caused by Xanthomonas campestris pv. campestris (Pam.) Dowson is the most destructive disease of cauliflower causing huge loss to the farmers throughout the world. Since there are limited sources of resistance to black rot in B. oleracea (C genome Brassica), exploration of A and B genomes of Brassica was planned as these were thought to be potential reservoirs of black rot resistance gene(s). In our search for new gene(s) for black rot resistance, F2 mapping population was developed in Brassica carinata (BBCC) by crossing NPC-17, a susceptible genotype with NPC-9, a resistant genotype. Out of 364 Intron length polymorphic markers and microsatellite primers used in this study, 41 distinguished the parental lines. However, resistant and susceptible bulks could be distinguished by three markers At1g70610, SSR Na14-G02 and At1g71865 which were used for genotyping of F2 mapping population. These markers were placed along the resistance gene, according to order, covering a distance of 36.30 cM. Intron length polymorphic markers At1g70610 and At1g71865 were found to be linked to black rot resistance locus (Xca1bc) at 6.2 and 12.8 cM distance, respectively. This is the first report of identification of markers linked to Xca1bc locus in Brassica carinata on B-7 linkage group. Intron length polymorphic markers provided a novel and attractive option for marker assisted selection due to high cross transferability and cost effectiveness for marker assisted alien gene introgression into cauliflower.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>27023128</pmid><doi>10.1371/journal.pone.0152290</doi><oa>free_for_read</oa></addata></record> |
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| ispartof | PloS one, 2016-03, Vol.11 (3), p.e0152290-e0152290 |
| issn | 1932-6203 1932-6203 |
| language | eng |
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| source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Free Full-Text Journals in Chemistry; Public Library of Science (PLoS) |
| subjects | Agricultural economics Biology and Life Sciences Black rot Brassica Brassica carinata Brassica juncea Brassica napus Brassica oleracea Brassicaceae Chromosome Mapping Chromosome Segregation - genetics Chromosomes, Plant - genetics Cost effectiveness Crop diseases Crosses, Genetic Disease resistance (Plants) Disease Resistance - genetics Diseases and pests Gene mapping Genes Genes, Plant Genetic aspects Genetic Linkage Genetic Loci Genetic Markers Genetics Genomes Genomics Genotype Genotyping Laboratories Loci Mapping Markers Mustard Mustard (Condiment) Mustard Plant - genetics Mustard Plant - immunology Mustard Plant - microbiology Phenotype Plant Diseases - genetics Plant Diseases - immunology Plant Diseases - microbiology Primers Research and Analysis Methods Science Xanthomonas campestris Xanthomonas campestris - physiology |
| title | Genetics and Molecular Mapping of Black Rot Resistance Locus Xca1bc on Chromosome B-7 in Ethiopian Mustard (Brassica carinata A. Braun) |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-30T23%3A45%3A55IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genetics%20and%20Molecular%20Mapping%20of%20Black%20Rot%20Resistance%20Locus%20Xca1bc%20on%20Chromosome%20B-7%20in%20Ethiopian%20Mustard%20(Brassica%20carinata%20A.%20Braun)&rft.jtitle=PloS%20one&rft.au=Sharma,%20Brij%20Bihari&rft.date=2016-03-29&rft.volume=11&rft.issue=3&rft.spage=e0152290&rft.epage=e0152290&rft.pages=e0152290-e0152290&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0152290&rft_dat=%3Cgale_plos_%3EA453470247%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1986258142&rft_id=info:pmid/27023128&rft_galeid=A453470247&rft_doaj_id=oai_doaj_org_article_e9dfebe18adf44ee9746ec362d2b40e0&rfr_iscdi=true |