The unique hmuY gene sequence as a specific marker of Porphyromonas gingivalis

Porphyromonas gingivalis, a major etiological agent of chronic periodontitis, acquires heme from host hemoproteins using the HmuY hemophore. The aim of this study was to develop a specific P. gingivalis marker based on a hmuY gene sequence. Subgingival samples were collected from 66 patients with ch...

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Veröffentlicht in:PloS one 2013-07, Vol.8 (7), p.e67719-e67719
Hauptverfasser: Gmiterek, Anna, Wójtowicz, Halina, Mackiewicz, Paweł, Radwan-Oczko, Małgorzata, Kantorowicz, Małgorzata, Chomyszyn-Gajewska, Maria, Frąszczak, Magdalena, Bielecki, Marcin, Olczak, Mariusz, Olczak, Teresa
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container_issue 7
container_start_page e67719
container_title PloS one
container_volume 8
creator Gmiterek, Anna
Wójtowicz, Halina
Mackiewicz, Paweł
Radwan-Oczko, Małgorzata
Kantorowicz, Małgorzata
Chomyszyn-Gajewska, Maria
Frąszczak, Magdalena
Bielecki, Marcin
Olczak, Mariusz
Olczak, Teresa
description Porphyromonas gingivalis, a major etiological agent of chronic periodontitis, acquires heme from host hemoproteins using the HmuY hemophore. The aim of this study was to develop a specific P. gingivalis marker based on a hmuY gene sequence. Subgingival samples were collected from 66 patients with chronic periodontitis and 40 healthy subjects and the entire hmuY gene was analyzed in positive samples. Phylogenetic analyses demonstrated that both the amino acid sequence of the HmuY protein and the nucleotide sequence of the hmuY gene are unique among P. gingivalis strains/isolates and show low identity to sequences found in other species (below 50 and 56%, respectively). In agreement with these findings, a set of hmuY gene-based primers and standard/real-time PCR with SYBR Green chemistry allowed us to specifically detect P. gingivalis in patients with chronic periodontitis (77.3%) and healthy subjects (20%), the latter possessing lower number of P. gingivalis cells and total bacterial cells. Isolates from healthy subjects possess the hmuY gene-based nucleotide sequence pattern occurring in W83/W50/A7436 (n = 4), 381/ATCC 33277 (n = 3) or TDC60 (n = 1) strains, whereas those from patients typically have TDC60 (n = 21), W83/W50/A7436 (n = 17) and 381/ATCC 33277 (n = 13) strains. We observed a significant correlation between periodontal index of risk of infectiousness (PIRI) and the presence/absence of P. gingivalis (regardless of the hmuY gene-based sequence pattern of the isolate identified [r = 0.43; P = 0.0002] and considering particular isolate pattern [r = 0.38; P = 0.0012]). In conclusion, we demonstrated that the hmuY gene sequence or its fragments may be used as one of the molecular markers of P. gingivalis.
doi_str_mv 10.1371/journal.pone.0067719
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The aim of this study was to develop a specific P. gingivalis marker based on a hmuY gene sequence. Subgingival samples were collected from 66 patients with chronic periodontitis and 40 healthy subjects and the entire hmuY gene was analyzed in positive samples. Phylogenetic analyses demonstrated that both the amino acid sequence of the HmuY protein and the nucleotide sequence of the hmuY gene are unique among P. gingivalis strains/isolates and show low identity to sequences found in other species (below 50 and 56%, respectively). In agreement with these findings, a set of hmuY gene-based primers and standard/real-time PCR with SYBR Green chemistry allowed us to specifically detect P. gingivalis in patients with chronic periodontitis (77.3%) and healthy subjects (20%), the latter possessing lower number of P. gingivalis cells and total bacterial cells. Isolates from healthy subjects possess the hmuY gene-based nucleotide sequence pattern occurring in W83/W50/A7436 (n = 4), 381/ATCC 33277 (n = 3) or TDC60 (n = 1) strains, whereas those from patients typically have TDC60 (n = 21), W83/W50/A7436 (n = 17) and 381/ATCC 33277 (n = 13) strains. We observed a significant correlation between periodontal index of risk of infectiousness (PIRI) and the presence/absence of P. gingivalis (regardless of the hmuY gene-based sequence pattern of the isolate identified [r = 0.43; P = 0.0002] and considering particular isolate pattern [r = 0.38; P = 0.0012]). In conclusion, we demonstrated that the hmuY gene sequence or its fragments may be used as one of the molecular markers of P. gingivalis.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0067719</identifier><identifier>PMID: 23844074</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Adult ; Aged ; Amino acid sequence ; Anaerobic bacteria ; Antibiotics ; Bacteria ; Bacterial infections ; Bacterial Proteins - chemistry ; Bacterial Proteins - genetics ; Bacterial Proteins - metabolism ; Bacteroidaceae Infections - microbiology ; Bacteroides ; Bacteroides gingivalis ; Base Sequence ; Biochemistry ; Biological markers ; Biology ; Biomarkers - analysis ; Biotechnology ; Case-Control Studies ; Chronic Periodontitis - microbiology ; Deoxyribonucleic acid ; Disease ; DNA ; Etiology ; Female ; Genes ; Genetic aspects ; Genomes ; Genomics ; Green chemistry ; Green development ; Gum disease ; Health risks ; Heme ; Heme - metabolism ; Hemeproteins - metabolism ; HmuY protein ; Humans ; Hybridization ; Infections ; Laboratories ; Male ; Medicine ; Microbiota ; Middle Aged ; Molecular Sequence Data ; Nucleotide sequence ; Pathogens ; Patients ; Periodontitis ; Phylogeny ; Porphyromonas gingivalis ; Porphyromonas gingivalis - classification ; Porphyromonas gingivalis - genetics ; Porphyromonas gingivalis - isolation &amp; purification ; Primers ; RNA polymerase ; Sequence Alignment ; Strains (organisms) ; Teeth</subject><ispartof>PloS one, 2013-07, Vol.8 (7), p.e67719-e67719</ispartof><rights>COPYRIGHT 2013 Public Library of Science</rights><rights>2013 Gmiterek et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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The aim of this study was to develop a specific P. gingivalis marker based on a hmuY gene sequence. Subgingival samples were collected from 66 patients with chronic periodontitis and 40 healthy subjects and the entire hmuY gene was analyzed in positive samples. Phylogenetic analyses demonstrated that both the amino acid sequence of the HmuY protein and the nucleotide sequence of the hmuY gene are unique among P. gingivalis strains/isolates and show low identity to sequences found in other species (below 50 and 56%, respectively). In agreement with these findings, a set of hmuY gene-based primers and standard/real-time PCR with SYBR Green chemistry allowed us to specifically detect P. gingivalis in patients with chronic periodontitis (77.3%) and healthy subjects (20%), the latter possessing lower number of P. gingivalis cells and total bacterial cells. Isolates from healthy subjects possess the hmuY gene-based nucleotide sequence pattern occurring in W83/W50/A7436 (n = 4), 381/ATCC 33277 (n = 3) or TDC60 (n = 1) strains, whereas those from patients typically have TDC60 (n = 21), W83/W50/A7436 (n = 17) and 381/ATCC 33277 (n = 13) strains. We observed a significant correlation between periodontal index of risk of infectiousness (PIRI) and the presence/absence of P. gingivalis (regardless of the hmuY gene-based sequence pattern of the isolate identified [r = 0.43; P = 0.0002] and considering particular isolate pattern [r = 0.38; P = 0.0012]). In conclusion, we demonstrated that the hmuY gene sequence or its fragments may be used as one of the molecular markers of P. gingivalis.</description><subject>Adult</subject><subject>Aged</subject><subject>Amino acid sequence</subject><subject>Anaerobic bacteria</subject><subject>Antibiotics</subject><subject>Bacteria</subject><subject>Bacterial infections</subject><subject>Bacterial Proteins - chemistry</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacterial Proteins - metabolism</subject><subject>Bacteroidaceae Infections - microbiology</subject><subject>Bacteroides</subject><subject>Bacteroides gingivalis</subject><subject>Base Sequence</subject><subject>Biochemistry</subject><subject>Biological markers</subject><subject>Biology</subject><subject>Biomarkers - analysis</subject><subject>Biotechnology</subject><subject>Case-Control Studies</subject><subject>Chronic Periodontitis - microbiology</subject><subject>Deoxyribonucleic acid</subject><subject>Disease</subject><subject>DNA</subject><subject>Etiology</subject><subject>Female</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Green chemistry</subject><subject>Green development</subject><subject>Gum disease</subject><subject>Health risks</subject><subject>Heme</subject><subject>Heme - metabolism</subject><subject>Hemeproteins - metabolism</subject><subject>HmuY protein</subject><subject>Humans</subject><subject>Hybridization</subject><subject>Infections</subject><subject>Laboratories</subject><subject>Male</subject><subject>Medicine</subject><subject>Microbiota</subject><subject>Middle Aged</subject><subject>Molecular Sequence Data</subject><subject>Nucleotide sequence</subject><subject>Pathogens</subject><subject>Patients</subject><subject>Periodontitis</subject><subject>Phylogeny</subject><subject>Porphyromonas gingivalis</subject><subject>Porphyromonas gingivalis - classification</subject><subject>Porphyromonas gingivalis - genetics</subject><subject>Porphyromonas gingivalis - isolation &amp; 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Medical Complete (Alumni)</collection><collection>Materials Science Database</collection><collection>Nursing &amp; Allied Health Database (Alumni Edition)</collection><collection>Meteorological &amp; Geoastrophysical Abstracts - Academic</collection><collection>ProQuest Engineering Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Nursing &amp; Allied Health Premium</collection><collection>Advanced Technologies &amp; Aerospace Database</collection><collection>ProQuest Advanced Technologies &amp; Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Materials Science Collection</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gmiterek, Anna</au><au>Wójtowicz, Halina</au><au>Mackiewicz, Paweł</au><au>Radwan-Oczko, Małgorzata</au><au>Kantorowicz, Małgorzata</au><au>Chomyszyn-Gajewska, Maria</au><au>Frąszczak, Magdalena</au><au>Bielecki, Marcin</au><au>Olczak, Mariusz</au><au>Olczak, Teresa</au><au>Mokrousov, Igor</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The unique hmuY gene sequence as a specific marker of Porphyromonas gingivalis</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2013-07-02</date><risdate>2013</risdate><volume>8</volume><issue>7</issue><spage>e67719</spage><epage>e67719</epage><pages>e67719-e67719</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Porphyromonas gingivalis, a major etiological agent of chronic periodontitis, acquires heme from host hemoproteins using the HmuY hemophore. The aim of this study was to develop a specific P. gingivalis marker based on a hmuY gene sequence. Subgingival samples were collected from 66 patients with chronic periodontitis and 40 healthy subjects and the entire hmuY gene was analyzed in positive samples. Phylogenetic analyses demonstrated that both the amino acid sequence of the HmuY protein and the nucleotide sequence of the hmuY gene are unique among P. gingivalis strains/isolates and show low identity to sequences found in other species (below 50 and 56%, respectively). In agreement with these findings, a set of hmuY gene-based primers and standard/real-time PCR with SYBR Green chemistry allowed us to specifically detect P. gingivalis in patients with chronic periodontitis (77.3%) and healthy subjects (20%), the latter possessing lower number of P. gingivalis cells and total bacterial cells. Isolates from healthy subjects possess the hmuY gene-based nucleotide sequence pattern occurring in W83/W50/A7436 (n = 4), 381/ATCC 33277 (n = 3) or TDC60 (n = 1) strains, whereas those from patients typically have TDC60 (n = 21), W83/W50/A7436 (n = 17) and 381/ATCC 33277 (n = 13) strains. We observed a significant correlation between periodontal index of risk of infectiousness (PIRI) and the presence/absence of P. gingivalis (regardless of the hmuY gene-based sequence pattern of the isolate identified [r = 0.43; P = 0.0002] and considering particular isolate pattern [r = 0.38; P = 0.0012]). In conclusion, we demonstrated that the hmuY gene sequence or its fragments may be used as one of the molecular markers of P. gingivalis.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>23844074</pmid><doi>10.1371/journal.pone.0067719</doi><tpages>e67719</tpages><oa>free_for_read</oa></addata></record>
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identifier ISSN: 1932-6203
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1932-6203
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source MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Public Library of Science (PLoS); PubMed Central; Free Full-Text Journals in Chemistry
subjects Adult
Aged
Amino acid sequence
Anaerobic bacteria
Antibiotics
Bacteria
Bacterial infections
Bacterial Proteins - chemistry
Bacterial Proteins - genetics
Bacterial Proteins - metabolism
Bacteroidaceae Infections - microbiology
Bacteroides
Bacteroides gingivalis
Base Sequence
Biochemistry
Biological markers
Biology
Biomarkers - analysis
Biotechnology
Case-Control Studies
Chronic Periodontitis - microbiology
Deoxyribonucleic acid
Disease
DNA
Etiology
Female
Genes
Genetic aspects
Genomes
Genomics
Green chemistry
Green development
Gum disease
Health risks
Heme
Heme - metabolism
Hemeproteins - metabolism
HmuY protein
Humans
Hybridization
Infections
Laboratories
Male
Medicine
Microbiota
Middle Aged
Molecular Sequence Data
Nucleotide sequence
Pathogens
Patients
Periodontitis
Phylogeny
Porphyromonas gingivalis
Porphyromonas gingivalis - classification
Porphyromonas gingivalis - genetics
Porphyromonas gingivalis - isolation & purification
Primers
RNA polymerase
Sequence Alignment
Strains (organisms)
Teeth
title The unique hmuY gene sequence as a specific marker of Porphyromonas gingivalis
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