Genome-wide SNPs reveal the drivers of gene flow in an urban population of the Asian Tiger Mosquito, Aedes albopictus
Aedes albopictus is a highly invasive disease vector with an expanding worldwide distribution. Genetic assays using low to medium resolution markers have found little evidence of spatial genetic structure even at broad geographic scales, suggesting frequent passive movement along human transportatio...
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| Veröffentlicht in: | PLoS neglected tropical diseases 2017-10, Vol.11 (10), p.e0006009-e0006009 |
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| creator | Schmidt, Thomas L Rašić, Gordana Zhang, Dongjing Zheng, Xiaoying Xi, Zhiyong Hoffmann, Ary A |
| description | Aedes albopictus is a highly invasive disease vector with an expanding worldwide distribution. Genetic assays using low to medium resolution markers have found little evidence of spatial genetic structure even at broad geographic scales, suggesting frequent passive movement along human transportation networks. Here we analysed genetic structure of Aedes albopictus collected from 12 sample sites in Guangzhou, China, using thousands of genome-wide single nucleotide polymorphisms (SNPs). We found evidence for passive gene flow, with distance from shipping terminals being the strongest predictor of genetic distance among mosquitoes. As further evidence of passive dispersal, we found multiple pairs of full-siblings distributed between two sample sites 3.7 km apart. After accounting for geographical variability, we also found evidence for isolation by distance, previously undetectable in Ae. albopictus. These findings demonstrate how large SNP datasets and spatially-explicit hypothesis testing can be used to decipher processes at finer geographic scales than formerly possible. Our approach can be used to help predict new invasion pathways of Ae. albopictus and to refine strategies for vector control that involve the transformation or suppression of mosquito populations. |
| doi_str_mv | 10.1371/journal.pntd.0006009 |
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Genetic assays using low to medium resolution markers have found little evidence of spatial genetic structure even at broad geographic scales, suggesting frequent passive movement along human transportation networks. Here we analysed genetic structure of Aedes albopictus collected from 12 sample sites in Guangzhou, China, using thousands of genome-wide single nucleotide polymorphisms (SNPs). We found evidence for passive gene flow, with distance from shipping terminals being the strongest predictor of genetic distance among mosquitoes. As further evidence of passive dispersal, we found multiple pairs of full-siblings distributed between two sample sites 3.7 km apart. After accounting for geographical variability, we also found evidence for isolation by distance, previously undetectable in Ae. albopictus. These findings demonstrate how large SNP datasets and spatially-explicit hypothesis testing can be used to decipher processes at finer geographic scales than formerly possible. Our approach can be used to help predict new invasion pathways of Ae. albopictus and to refine strategies for vector control that involve the transformation or suppression of mosquito populations.</description><identifier>ISSN: 1935-2735</identifier><identifier>ISSN: 1935-2727</identifier><identifier>EISSN: 1935-2735</identifier><identifier>DOI: 10.1371/journal.pntd.0006009</identifier><identifier>PMID: 29045401</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Aedes - genetics ; Aedes aegypti ; Aedes albopictus ; Animals ; Aquatic insects ; Biology and Life Sciences ; Causes of ; China ; Cities ; Computer and Information Sciences ; Dengue fever ; Disease control ; Dispersal ; Distance ; Earth Sciences ; Ecology and Environmental Sciences ; Engineering and Technology ; Funding ; Gene Flow ; Genetic aspects ; Genetic distance ; Genetic structure ; Genetic transformation ; Genome, Insect - genetics ; Genome-Wide Association Study ; Genomes ; Geography ; Human motion ; Hypothesis testing ; Laboratories ; Medicine and Health Sciences ; Mosquito Vectors - genetics ; Mosquitoes ; Nonnative species ; Nucleotides ; Parasitology ; Polymorphism, Single Nucleotide - genetics ; Population genetics ; Research and Analysis Methods ; Ship terminals ; Shipping ; Siblings ; Single nucleotide polymorphisms ; Single-nucleotide polymorphism ; Software ; Spatial distribution ; Studies ; Supervision ; Transformation ; Transport buildings, stations and terminals ; Transportation ; Transportation networks ; Tropical diseases ; Urban populations ; Wolbachia</subject><ispartof>PLoS neglected tropical diseases, 2017-10, Vol.11 (10), p.e0006009-e0006009</ispartof><rights>COPYRIGHT 2017 Public Library of Science</rights><rights>2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: . PLoS Negl Trop Dis11(10): e0006009. https://doi.org/10.1371/journal.pntd.0006009</rights><rights>2017 Schmidt et al 2017 Schmidt et al</rights><rights>2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: . PLoS Negl Trop Dis11(10): e0006009. https://doi.org/10.1371/journal.pntd.0006009</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c624t-96b92642d442e969e617b8b175c2912311883342056db334c4410992a296e1ad3</citedby><cites>FETCH-LOGICAL-c624t-96b92642d442e969e617b8b175c2912311883342056db334c4410992a296e1ad3</cites><orcidid>0000-0003-4695-075X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5662242/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5662242/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79342,79343</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29045401$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Schmidt, Thomas L</creatorcontrib><creatorcontrib>Rašić, Gordana</creatorcontrib><creatorcontrib>Zhang, Dongjing</creatorcontrib><creatorcontrib>Zheng, Xiaoying</creatorcontrib><creatorcontrib>Xi, Zhiyong</creatorcontrib><creatorcontrib>Hoffmann, Ary A</creatorcontrib><title>Genome-wide SNPs reveal the drivers of gene flow in an urban population of the Asian Tiger Mosquito, Aedes albopictus</title><title>PLoS neglected tropical diseases</title><addtitle>PLoS Negl Trop Dis</addtitle><description>Aedes albopictus is a highly invasive disease vector with an expanding worldwide distribution. Genetic assays using low to medium resolution markers have found little evidence of spatial genetic structure even at broad geographic scales, suggesting frequent passive movement along human transportation networks. Here we analysed genetic structure of Aedes albopictus collected from 12 sample sites in Guangzhou, China, using thousands of genome-wide single nucleotide polymorphisms (SNPs). We found evidence for passive gene flow, with distance from shipping terminals being the strongest predictor of genetic distance among mosquitoes. As further evidence of passive dispersal, we found multiple pairs of full-siblings distributed between two sample sites 3.7 km apart. After accounting for geographical variability, we also found evidence for isolation by distance, previously undetectable in Ae. albopictus. These findings demonstrate how large SNP datasets and spatially-explicit hypothesis testing can be used to decipher processes at finer geographic scales than formerly possible. Our approach can be used to help predict new invasion pathways of Ae. albopictus and to refine strategies for vector control that involve the transformation or suppression of mosquito populations.</description><subject>Aedes - genetics</subject><subject>Aedes aegypti</subject><subject>Aedes albopictus</subject><subject>Animals</subject><subject>Aquatic insects</subject><subject>Biology and Life Sciences</subject><subject>Causes of</subject><subject>China</subject><subject>Cities</subject><subject>Computer and Information Sciences</subject><subject>Dengue fever</subject><subject>Disease control</subject><subject>Dispersal</subject><subject>Distance</subject><subject>Earth Sciences</subject><subject>Ecology and Environmental Sciences</subject><subject>Engineering and Technology</subject><subject>Funding</subject><subject>Gene Flow</subject><subject>Genetic aspects</subject><subject>Genetic distance</subject><subject>Genetic structure</subject><subject>Genetic transformation</subject><subject>Genome, Insect - genetics</subject><subject>Genome-Wide Association Study</subject><subject>Genomes</subject><subject>Geography</subject><subject>Human motion</subject><subject>Hypothesis testing</subject><subject>Laboratories</subject><subject>Medicine and Health Sciences</subject><subject>Mosquito Vectors - genetics</subject><subject>Mosquitoes</subject><subject>Nonnative species</subject><subject>Nucleotides</subject><subject>Parasitology</subject><subject>Polymorphism, Single Nucleotide - genetics</subject><subject>Population genetics</subject><subject>Research and Analysis Methods</subject><subject>Ship terminals</subject><subject>Shipping</subject><subject>Siblings</subject><subject>Single nucleotide polymorphisms</subject><subject>Single-nucleotide polymorphism</subject><subject>Software</subject><subject>Spatial distribution</subject><subject>Studies</subject><subject>Supervision</subject><subject>Transformation</subject><subject>Transport buildings, stations and terminals</subject><subject>Transportation</subject><subject>Transportation networks</subject><subject>Tropical diseases</subject><subject>Urban populations</subject><subject>Wolbachia</subject><issn>1935-2735</issn><issn>1935-2727</issn><issn>1935-2735</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNptkl1rFDEUhgdRbK3-A9GAIF64a75nc1NYitZC_QDrdchkzuxmyU6mycwW_70Zd1p2pQSScPK8b5LDWxSvCZ4TVpJPmzDE1vh51_b1HGMsMVZPilOimJjRkomnB_uT4kVKG4yFEgvyvDihCnPBMTkthktowxZmd64G9Ov7z4Qi7MB41K8B1dHtICYUGrSCFlDjwx1yLTItGmKV5y50gze9C-3IjJJlcrl-41YQ0beQbgfXh49oCTUkZHwVOmf7Ib0snjXGJ3g1rWfF7y-fby6-zq5_XF5dLK9nVlLez5SsFJWc1pxTUFKBJGW1qEgpLFWEMkIWC8Y4xULWVd5YzglWihqqJBBTs7Pi7d638yHpqWNJEyUFwWWJeSau9kQdzEZ30W1N_KODcfpfIcSVNrF31oO2zBrMMK9xxfiCgOGkbDBUUDVEQNNkr_PptqHaQm2h7aPxR6bHJ61b61XYaSElpZxmgw-TQQy3A6Reb12y4L1pIQzjuwWjSnDFMvruP_Tx303UyuQPuLYJ-V47muqlIFSWIickU_NHqDxq2DobWmhcrh8J3h8I1jku_ToFP4xBSMcg34M2hpQiNA_NIFiPKb5_tR5TrKcUZ9mbw0Y-iO5jy_4CJzPs1g</recordid><startdate>20171018</startdate><enddate>20171018</enddate><creator>Schmidt, Thomas L</creator><creator>Rašić, Gordana</creator><creator>Zhang, Dongjing</creator><creator>Zheng, Xiaoying</creator><creator>Xi, Zhiyong</creator><creator>Hoffmann, Ary A</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7SS</scope><scope>7T2</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8C1</scope><scope>8FD</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H94</scope><scope>H95</scope><scope>H97</scope><scope>K9.</scope><scope>L.G</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0003-4695-075X</orcidid></search><sort><creationdate>20171018</creationdate><title>Genome-wide SNPs reveal the drivers of gene flow in an urban population of the Asian Tiger Mosquito, Aedes albopictus</title><author>Schmidt, Thomas L ; Rašić, Gordana ; Zhang, Dongjing ; Zheng, Xiaoying ; Xi, Zhiyong ; Hoffmann, Ary A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c624t-96b92642d442e969e617b8b175c2912311883342056db334c4410992a296e1ad3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Aedes - genetics</topic><topic>Aedes aegypti</topic><topic>Aedes albopictus</topic><topic>Animals</topic><topic>Aquatic insects</topic><topic>Biology and Life Sciences</topic><topic>Causes of</topic><topic>China</topic><topic>Cities</topic><topic>Computer and Information Sciences</topic><topic>Dengue fever</topic><topic>Disease control</topic><topic>Dispersal</topic><topic>Distance</topic><topic>Earth Sciences</topic><topic>Ecology and Environmental Sciences</topic><topic>Engineering and Technology</topic><topic>Funding</topic><topic>Gene Flow</topic><topic>Genetic aspects</topic><topic>Genetic distance</topic><topic>Genetic structure</topic><topic>Genetic transformation</topic><topic>Genome, Insect - genetics</topic><topic>Genome-Wide Association Study</topic><topic>Genomes</topic><topic>Geography</topic><topic>Human motion</topic><topic>Hypothesis testing</topic><topic>Laboratories</topic><topic>Medicine and Health Sciences</topic><topic>Mosquito Vectors - genetics</topic><topic>Mosquitoes</topic><topic>Nonnative species</topic><topic>Nucleotides</topic><topic>Parasitology</topic><topic>Polymorphism, Single Nucleotide - genetics</topic><topic>Population genetics</topic><topic>Research and Analysis Methods</topic><topic>Ship terminals</topic><topic>Shipping</topic><topic>Siblings</topic><topic>Single nucleotide polymorphisms</topic><topic>Single-nucleotide polymorphism</topic><topic>Software</topic><topic>Spatial distribution</topic><topic>Studies</topic><topic>Supervision</topic><topic>Transformation</topic><topic>Transport buildings, stations and terminals</topic><topic>Transportation</topic><topic>Transportation networks</topic><topic>Tropical diseases</topic><topic>Urban populations</topic><topic>Wolbachia</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Schmidt, Thomas L</creatorcontrib><creatorcontrib>Rašić, Gordana</creatorcontrib><creatorcontrib>Zhang, Dongjing</creatorcontrib><creatorcontrib>Zheng, Xiaoying</creatorcontrib><creatorcontrib>Xi, Zhiyong</creatorcontrib><creatorcontrib>Hoffmann, Ary A</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Health and Safety Science Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PLoS neglected tropical diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Schmidt, Thomas L</au><au>Rašić, Gordana</au><au>Zhang, Dongjing</au><au>Zheng, Xiaoying</au><au>Xi, Zhiyong</au><au>Hoffmann, Ary A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-wide SNPs reveal the drivers of gene flow in an urban population of the Asian Tiger Mosquito, Aedes albopictus</atitle><jtitle>PLoS neglected tropical diseases</jtitle><addtitle>PLoS Negl Trop Dis</addtitle><date>2017-10-18</date><risdate>2017</risdate><volume>11</volume><issue>10</issue><spage>e0006009</spage><epage>e0006009</epage><pages>e0006009-e0006009</pages><issn>1935-2735</issn><issn>1935-2727</issn><eissn>1935-2735</eissn><abstract>Aedes albopictus is a highly invasive disease vector with an expanding worldwide distribution. Genetic assays using low to medium resolution markers have found little evidence of spatial genetic structure even at broad geographic scales, suggesting frequent passive movement along human transportation networks. Here we analysed genetic structure of Aedes albopictus collected from 12 sample sites in Guangzhou, China, using thousands of genome-wide single nucleotide polymorphisms (SNPs). We found evidence for passive gene flow, with distance from shipping terminals being the strongest predictor of genetic distance among mosquitoes. As further evidence of passive dispersal, we found multiple pairs of full-siblings distributed between two sample sites 3.7 km apart. After accounting for geographical variability, we also found evidence for isolation by distance, previously undetectable in Ae. albopictus. These findings demonstrate how large SNP datasets and spatially-explicit hypothesis testing can be used to decipher processes at finer geographic scales than formerly possible. Our approach can be used to help predict new invasion pathways of Ae. albopictus and to refine strategies for vector control that involve the transformation or suppression of mosquito populations.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>29045401</pmid><doi>10.1371/journal.pntd.0006009</doi><orcidid>https://orcid.org/0000-0003-4695-075X</orcidid><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; DOAJ Directory of Open Access Journals; EZB-FREE-00999 freely available EZB journals; PubMed Central; PubMed Central Open Access; Public Library of Science (PLoS) |
| subjects | Aedes - genetics Aedes aegypti Aedes albopictus Animals Aquatic insects Biology and Life Sciences Causes of China Cities Computer and Information Sciences Dengue fever Disease control Dispersal Distance Earth Sciences Ecology and Environmental Sciences Engineering and Technology Funding Gene Flow Genetic aspects Genetic distance Genetic structure Genetic transformation Genome, Insect - genetics Genome-Wide Association Study Genomes Geography Human motion Hypothesis testing Laboratories Medicine and Health Sciences Mosquito Vectors - genetics Mosquitoes Nonnative species Nucleotides Parasitology Polymorphism, Single Nucleotide - genetics Population genetics Research and Analysis Methods Ship terminals Shipping Siblings Single nucleotide polymorphisms Single-nucleotide polymorphism Software Spatial distribution Studies Supervision Transformation Transport buildings, stations and terminals Transportation Transportation networks Tropical diseases Urban populations Wolbachia |
| title | Genome-wide SNPs reveal the drivers of gene flow in an urban population of the Asian Tiger Mosquito, Aedes albopictus |
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