Lower frequency of TLR9 variant associated with protection from breast cancer among African Americans

Toll-like receptor 9 (TLR9) is an innate immune system DNA-receptor that regulates tumor invasion and immunity in vitro. Low tumor TLR9 expression has been associated with poor survival in Caucasian patients with triple negative breast cancer (TNBC). African American (AA) patients with TNBC have wor...

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Veröffentlicht in:PloS one 2017-09, Vol.12 (9), p.e0183832-e0183832
Hauptverfasser: Chandler, Madison R, Keene, Kimberly S, Tuomela, Johanna M, Forero-Torres, Andres, Desmond, Renee, Vuopala, Katri S, Harris, Kevin W, Merner, Nancy D, Selander, Katri S
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container_issue 9
container_start_page e0183832
container_title PloS one
container_volume 12
creator Chandler, Madison R
Keene, Kimberly S
Tuomela, Johanna M
Forero-Torres, Andres
Desmond, Renee
Vuopala, Katri S
Harris, Kevin W
Merner, Nancy D
Selander, Katri S
description Toll-like receptor 9 (TLR9) is an innate immune system DNA-receptor that regulates tumor invasion and immunity in vitro. Low tumor TLR9 expression has been associated with poor survival in Caucasian patients with triple negative breast cancer (TNBC). African American (AA) patients with TNBC have worse prognosis than Caucasians but whether this is due to differences in tumor biology remains controversial. We studied the prognostic significance of tumor Toll like receptor-9 (TLR9) protein expression among African American (AA) triple negative breast cancer (TNBC) patients. Germline TLR9 variants in European Americans (EAs) and AAs were investigated, to determine their contribution to AA breast cancer risk. TLR9 expression was studied with immunohistochemistry in archival tumors. Exome Variant Server and The Cancer Genome Atlas were used to determine the genetic variation in the general EA and AA populations, and AA breast cancer cases. Minor allele frequencies (MAFs) were compared between EAs (n = 4300), AAs (n = 2203), and/or AA breast cancer cases (n = 131). Thirty-two TLR9 variants had a statistically significant MAF difference between general EAs and AAs. Twenty-one of them affect a CpG site. Rs352140, a variant previously associated with protection from breast cancer, is more common in EAs than AAs (p = 2.20E-16). EAs had more synonymous alleles, while AAs had more rare coding alleles. Similar analyses comparing AA breast cancer cases with AA controls did not reveal any variant class differences; however, three previously unreported TLR9 variants were associated with late onset breast cancer. Although not statistically significant, rs352140 was observed less frequently in AA cases compared to controls. Tumor TLR9 protein expression was not associated with prognosis. Tumor TLR9 expression is not associated with prognosis in AA TNBC. Significant differences were detected in TLR9 variant MAFs between EAs and AAs. They may affect TLR9 expression and function. Rs352140, which may protect from breast cancer, is 1.6 X more common among EAs. These findings call for a detailed analysis of the contribution of TLR9 to breast cancer pathophysiology and health disparities.
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Low tumor TLR9 expression has been associated with poor survival in Caucasian patients with triple negative breast cancer (TNBC). African American (AA) patients with TNBC have worse prognosis than Caucasians but whether this is due to differences in tumor biology remains controversial. We studied the prognostic significance of tumor Toll like receptor-9 (TLR9) protein expression among African American (AA) triple negative breast cancer (TNBC) patients. Germline TLR9 variants in European Americans (EAs) and AAs were investigated, to determine their contribution to AA breast cancer risk. TLR9 expression was studied with immunohistochemistry in archival tumors. Exome Variant Server and The Cancer Genome Atlas were used to determine the genetic variation in the general EA and AA populations, and AA breast cancer cases. Minor allele frequencies (MAFs) were compared between EAs (n = 4300), AAs (n = 2203), and/or AA breast cancer cases (n = 131). Thirty-two TLR9 variants had a statistically significant MAF difference between general EAs and AAs. Twenty-one of them affect a CpG site. Rs352140, a variant previously associated with protection from breast cancer, is more common in EAs than AAs (p = 2.20E-16). EAs had more synonymous alleles, while AAs had more rare coding alleles. Similar analyses comparing AA breast cancer cases with AA controls did not reveal any variant class differences; however, three previously unreported TLR9 variants were associated with late onset breast cancer. Although not statistically significant, rs352140 was observed less frequently in AA cases compared to controls. Tumor TLR9 protein expression was not associated with prognosis. Tumor TLR9 expression is not associated with prognosis in AA TNBC. Significant differences were detected in TLR9 variant MAFs between EAs and AAs. They may affect TLR9 expression and function. Rs352140, which may protect from breast cancer, is 1.6 X more common among EAs. These findings call for a detailed analysis of the contribution of TLR9 to breast cancer pathophysiology and health disparities.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0183832</identifier><identifier>PMID: 28886076</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Adult ; African Americans - genetics ; Aged ; Alleles ; Bioinformatics ; Biology and Life Sciences ; Biomarkers, Tumor - genetics ; Breast cancer ; Breast Neoplasms - genetics ; Breast Neoplasms - pathology ; Cancer ; CpG islands ; Deoxyribonucleic acid ; DNA ; DNA methylation ; European Continental Ancestry Group - genetics ; Female ; Gene expression ; Gene frequency ; Gene Frequency - genetics ; Genetic diversity ; Genomes ; Health risks ; Hematology ; Humans ; Immune system ; Immunity ; Immunohistochemistry ; In vitro methods and tests ; In Vitro Techniques ; Innate immunity ; Ligands ; Medical diagnosis ; Medical prognosis ; Medicine ; Medicine and Health Sciences ; Meningitis ; Middle Aged ; Minority &amp; ethnic groups ; Oncology ; Pathology ; Patients ; Polymorphism, Single Nucleotide - genetics ; Population genetics ; Prognosis ; Prostate ; Proteins ; Research and Analysis Methods ; Statistical analysis ; Statistical significance ; TLR9 protein ; Toll-Like Receptor 9 - genetics ; Toll-like receptors ; Triple Negative Breast Neoplasms - genetics ; Triple Negative Breast Neoplasms - pathology ; Tumors ; Womens health</subject><ispartof>PloS one, 2017-09, Vol.12 (9), p.e0183832-e0183832</ispartof><rights>2017 Chandler et al. 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Medical Research Collection</collection><collection>ProQuest One Academic Middle East (New)</collection><collection>ProQuest One Health &amp; Nursing</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Applied &amp; Life Sciences</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chandler, Madison R</au><au>Keene, Kimberly S</au><au>Tuomela, Johanna M</au><au>Forero-Torres, Andres</au><au>Desmond, Renee</au><au>Vuopala, Katri S</au><au>Harris, Kevin W</au><au>Merner, Nancy D</au><au>Selander, Katri S</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Lower frequency of TLR9 variant associated with protection from breast cancer among African Americans</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2017-09-08</date><risdate>2017</risdate><volume>12</volume><issue>9</issue><spage>e0183832</spage><epage>e0183832</epage><pages>e0183832-e0183832</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Toll-like receptor 9 (TLR9) is an innate immune system DNA-receptor that regulates tumor invasion and immunity in vitro. Low tumor TLR9 expression has been associated with poor survival in Caucasian patients with triple negative breast cancer (TNBC). African American (AA) patients with TNBC have worse prognosis than Caucasians but whether this is due to differences in tumor biology remains controversial. We studied the prognostic significance of tumor Toll like receptor-9 (TLR9) protein expression among African American (AA) triple negative breast cancer (TNBC) patients. Germline TLR9 variants in European Americans (EAs) and AAs were investigated, to determine their contribution to AA breast cancer risk. TLR9 expression was studied with immunohistochemistry in archival tumors. Exome Variant Server and The Cancer Genome Atlas were used to determine the genetic variation in the general EA and AA populations, and AA breast cancer cases. Minor allele frequencies (MAFs) were compared between EAs (n = 4300), AAs (n = 2203), and/or AA breast cancer cases (n = 131). Thirty-two TLR9 variants had a statistically significant MAF difference between general EAs and AAs. Twenty-one of them affect a CpG site. Rs352140, a variant previously associated with protection from breast cancer, is more common in EAs than AAs (p = 2.20E-16). EAs had more synonymous alleles, while AAs had more rare coding alleles. Similar analyses comparing AA breast cancer cases with AA controls did not reveal any variant class differences; however, three previously unreported TLR9 variants were associated with late onset breast cancer. Although not statistically significant, rs352140 was observed less frequently in AA cases compared to controls. Tumor TLR9 protein expression was not associated with prognosis. Tumor TLR9 expression is not associated with prognosis in AA TNBC. Significant differences were detected in TLR9 variant MAFs between EAs and AAs. They may affect TLR9 expression and function. Rs352140, which may protect from breast cancer, is 1.6 X more common among EAs. These findings call for a detailed analysis of the contribution of TLR9 to breast cancer pathophysiology and health disparities.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>28886076</pmid><doi>10.1371/journal.pone.0183832</doi><orcidid>https://orcid.org/0000-0003-4812-294X</orcidid><oa>free_for_read</oa></addata></record>
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1932-6203
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source MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Free Full-Text Journals in Chemistry; Public Library of Science (PLoS)
subjects Adult
African Americans - genetics
Aged
Alleles
Bioinformatics
Biology and Life Sciences
Biomarkers, Tumor - genetics
Breast cancer
Breast Neoplasms - genetics
Breast Neoplasms - pathology
Cancer
CpG islands
Deoxyribonucleic acid
DNA
DNA methylation
European Continental Ancestry Group - genetics
Female
Gene expression
Gene frequency
Gene Frequency - genetics
Genetic diversity
Genomes
Health risks
Hematology
Humans
Immune system
Immunity
Immunohistochemistry
In vitro methods and tests
In Vitro Techniques
Innate immunity
Ligands
Medical diagnosis
Medical prognosis
Medicine
Medicine and Health Sciences
Meningitis
Middle Aged
Minority & ethnic groups
Oncology
Pathology
Patients
Polymorphism, Single Nucleotide - genetics
Population genetics
Prognosis
Prostate
Proteins
Research and Analysis Methods
Statistical analysis
Statistical significance
TLR9 protein
Toll-Like Receptor 9 - genetics
Toll-like receptors
Triple Negative Breast Neoplasms - genetics
Triple Negative Breast Neoplasms - pathology
Tumors
Womens health
title Lower frequency of TLR9 variant associated with protection from breast cancer among African Americans
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