Differential DNA methylation of MSI2 and its correlation with diabetic traits

Differential DNA methylation with hyperglycemia is significantly associated with Type 2 Diabetes (T2D). Longtime extended exposure to high blood glucose levels can affect the epigenetic signatures in all organs. However, the relevance of the differential DNA methylation changes with hyperglycemia in...

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Veröffentlicht in:PloS one 2017-05, Vol.12 (5), p.e0177406-e0177406
Hauptverfasser: Jeon, Jae-Pil, Koh, In-Uk, Choi, Nak-Hyun, Kim, Bong-Jo, Han, Bok-Ghee, Lee, Suman
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Koh, In-Uk
Choi, Nak-Hyun
Kim, Bong-Jo
Han, Bok-Ghee
Lee, Suman
description Differential DNA methylation with hyperglycemia is significantly associated with Type 2 Diabetes (T2D). Longtime extended exposure to high blood glucose levels can affect the epigenetic signatures in all organs. However, the relevance of the differential DNA methylation changes with hyperglycemia in blood with pancreatic islets remains unclear. We investigated differential DNA methylation in relation to glucose homeostasis based on the Oral Glucose Tolerance Test (OGTT) in a population-based cohort. We found a total of 382 differential methylation sites from blood DNA in hyperglycemia and type 2 diabetes subgroups using a longitudinal and cross-sectional approach. Among them, three CpG sites were overlapped; they were mapped to the MSI2 and CXXC4 genes. In a DNA methylation replication study done by pyrosequencing (n = 440), the CpG site of MSI2 were shown to have strong associations with the T2D group (p value = 2.20E-16). The differential methylation of MSI2 at chr17:55484635 was associated with diabetes-related traits, in particular with insulin sensitivity (QUICKI, p value = 2.20E-16) and resistance (HOMA-IR, p value = 1.177E-07). In human pancreatic islets, at the single-base resolution (using whole-genome bisulfite sequencing), the 292 CpG sites in the ±5kb at chr17:55484635 were found to be significantly hypo-methylated in donors with T2D (average decrease = 13.91%, 95% confidence interval (CI) = 4.18~ 17.06) as compared to controls, and methylation patterns differed by sex (-9.57%, CI = -16.76~ -6.89) and age (0.12%, CI = -11.17~ 3.77). Differential methylation of the MSI2 gene (chr17:55484635) in blood and islet cells is strongly related to hyperglycemia. Our findings suggest that epigenetic perturbation on the target site of MSI2 gene in circulating blood and pancreatic islets should represent or affect hyperglycemia.
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Longtime extended exposure to high blood glucose levels can affect the epigenetic signatures in all organs. However, the relevance of the differential DNA methylation changes with hyperglycemia in blood with pancreatic islets remains unclear. We investigated differential DNA methylation in relation to glucose homeostasis based on the Oral Glucose Tolerance Test (OGTT) in a population-based cohort. We found a total of 382 differential methylation sites from blood DNA in hyperglycemia and type 2 diabetes subgroups using a longitudinal and cross-sectional approach. Among them, three CpG sites were overlapped; they were mapped to the MSI2 and CXXC4 genes. In a DNA methylation replication study done by pyrosequencing (n = 440), the CpG site of MSI2 were shown to have strong associations with the T2D group (p value = 2.20E-16). The differential methylation of MSI2 at chr17:55484635 was associated with diabetes-related traits, in particular with insulin sensitivity (QUICKI, p value = 2.20E-16) and resistance (HOMA-IR, p value = 1.177E-07). In human pancreatic islets, at the single-base resolution (using whole-genome bisulfite sequencing), the 292 CpG sites in the ±5kb at chr17:55484635 were found to be significantly hypo-methylated in donors with T2D (average decrease = 13.91%, 95% confidence interval (CI) = 4.18~ 17.06) as compared to controls, and methylation patterns differed by sex (-9.57%, CI = -16.76~ -6.89) and age (0.12%, CI = -11.17~ 3.77). Differential methylation of the MSI2 gene (chr17:55484635) in blood and islet cells is strongly related to hyperglycemia. 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This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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Longtime extended exposure to high blood glucose levels can affect the epigenetic signatures in all organs. However, the relevance of the differential DNA methylation changes with hyperglycemia in blood with pancreatic islets remains unclear. We investigated differential DNA methylation in relation to glucose homeostasis based on the Oral Glucose Tolerance Test (OGTT) in a population-based cohort. We found a total of 382 differential methylation sites from blood DNA in hyperglycemia and type 2 diabetes subgroups using a longitudinal and cross-sectional approach. Among them, three CpG sites were overlapped; they were mapped to the MSI2 and CXXC4 genes. In a DNA methylation replication study done by pyrosequencing (n = 440), the CpG site of MSI2 were shown to have strong associations with the T2D group (p value = 2.20E-16). The differential methylation of MSI2 at chr17:55484635 was associated with diabetes-related traits, in particular with insulin sensitivity (QUICKI, p value = 2.20E-16) and resistance (HOMA-IR, p value = 1.177E-07). In human pancreatic islets, at the single-base resolution (using whole-genome bisulfite sequencing), the 292 CpG sites in the ±5kb at chr17:55484635 were found to be significantly hypo-methylated in donors with T2D (average decrease = 13.91%, 95% confidence interval (CI) = 4.18~ 17.06) as compared to controls, and methylation patterns differed by sex (-9.57%, CI = -16.76~ -6.89) and age (0.12%, CI = -11.17~ 3.77). Differential methylation of the MSI2 gene (chr17:55484635) in blood and islet cells is strongly related to hyperglycemia. Our findings suggest that epigenetic perturbation on the target site of MSI2 gene in circulating blood and pancreatic islets should represent or affect hyperglycemia.</description><subject>Adipose tissue</subject><subject>Adult</subject><subject>Aged</subject><subject>Alcoholic beverages</subject><subject>Alignment</subject><subject>Apoptosis</subject><subject>Assaying</subject><subject>Biochemistry</subject><subject>Bioinformatics</subject><subject>Biology and life sciences</subject><subject>Biomedical materials</subject><subject>Bisulfite</subject><subject>Blood</subject><subject>Blood cells</subject><subject>Body mass</subject><subject>Body mass index</subject><subject>Cancer</subject><subject>Case-Control Studies</subject><subject>CD4 antigen</subject><subject>Cell death</subject><subject>Computer programs</subject><subject>Correlation</subject><subject>CpG Islands</subject><subject>Cross-Sectional Studies</subject><subject>Deoxyribonucleic acid</subject><subject>Diabetes</subject><subject>Diabetes mellitus</subject><subject>Diabetes Mellitus, Type 2 - blood</subject><subject>Diabetes Mellitus, Type 2 - genetics</subject><subject>Diabetes Mellitus, Type 2 - metabolism</subject><subject>Diabetics</subject><subject>Diagnosis</subject><subject>Diet</subject><subject>DNA</subject><subject>DNA Methylation</subject><subject>Drugs</subject><subject>Epidemiology</subject><subject>Epigenesis, Genetic</subject><subject>Epigenetics</subject><subject>Fasting</subject><subject>Female</subject><subject>Females</subject><subject>Food intake</subject><subject>Gene expression</subject><subject>Genetic testing</subject><subject>Genetics</subject><subject>Genomes</subject><subject>Glucose</subject><subject>Glucose Tolerance Test</subject><subject>Health aspects</subject><subject>Health care</subject><subject>Heart</subject><subject>Homeostasis</subject><subject>Hormones</subject><subject>Human behavior</subject><subject>Humans</subject><subject>Hyperglycemia</subject><subject>Hyperglycemia - blood</subject><subject>Hyperglycemia - genetics</subject><subject>Hypoxia</subject><subject>Ingestion</subject><subject>Insulin</subject><subject>Insulin resistance</subject><subject>Islet cells</subject><subject>Islets of Langerhans - metabolism</subject><subject>Leukemia</subject><subject>Leukocytes</subject><subject>Longitudinal Studies</subject><subject>Lungs</subject><subject>Male</subject><subject>Males</subject><subject>Medicine and Health Sciences</subject><subject>Methylation</subject><subject>Middle Aged</subject><subject>Nucleotide sequence</subject><subject>Obesity</subject><subject>Prospective Studies</subject><subject>Replication</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>RNA-Binding Proteins - genetics</subject><subject>Rodents</subject><subject>Science</subject><subject>Stem cells</subject><subject>Tobacco smoking</subject><subject>Transplantation</subject><subject>Transplants &amp; 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Allied Health Database (Alumni Edition)</collection><collection>Meteorological &amp; Geoastrophysical Abstracts - Academic</collection><collection>ProQuest Engineering Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Nursing &amp; Allied Health Premium</collection><collection>Advanced Technologies &amp; Aerospace Database</collection><collection>ProQuest Advanced Technologies &amp; Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Materials Science Collection</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Engineering Collection</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jeon, Jae-Pil</au><au>Koh, In-Uk</au><au>Choi, Nak-Hyun</au><au>Kim, Bong-Jo</au><au>Han, Bok-Ghee</au><au>Lee, Suman</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Differential DNA methylation of MSI2 and its correlation with diabetic traits</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2017-05-24</date><risdate>2017</risdate><volume>12</volume><issue>5</issue><spage>e0177406</spage><epage>e0177406</epage><pages>e0177406-e0177406</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Differential DNA methylation with hyperglycemia is significantly associated with Type 2 Diabetes (T2D). Longtime extended exposure to high blood glucose levels can affect the epigenetic signatures in all organs. However, the relevance of the differential DNA methylation changes with hyperglycemia in blood with pancreatic islets remains unclear. We investigated differential DNA methylation in relation to glucose homeostasis based on the Oral Glucose Tolerance Test (OGTT) in a population-based cohort. We found a total of 382 differential methylation sites from blood DNA in hyperglycemia and type 2 diabetes subgroups using a longitudinal and cross-sectional approach. Among them, three CpG sites were overlapped; they were mapped to the MSI2 and CXXC4 genes. In a DNA methylation replication study done by pyrosequencing (n = 440), the CpG site of MSI2 were shown to have strong associations with the T2D group (p value = 2.20E-16). The differential methylation of MSI2 at chr17:55484635 was associated with diabetes-related traits, in particular with insulin sensitivity (QUICKI, p value = 2.20E-16) and resistance (HOMA-IR, p value = 1.177E-07). In human pancreatic islets, at the single-base resolution (using whole-genome bisulfite sequencing), the 292 CpG sites in the ±5kb at chr17:55484635 were found to be significantly hypo-methylated in donors with T2D (average decrease = 13.91%, 95% confidence interval (CI) = 4.18~ 17.06) as compared to controls, and methylation patterns differed by sex (-9.57%, CI = -16.76~ -6.89) and age (0.12%, CI = -11.17~ 3.77). Differential methylation of the MSI2 gene (chr17:55484635) in blood and islet cells is strongly related to hyperglycemia. Our findings suggest that epigenetic perturbation on the target site of MSI2 gene in circulating blood and pancreatic islets should represent or affect hyperglycemia.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>28542303</pmid><doi>10.1371/journal.pone.0177406</doi><tpages>e0177406</tpages><orcidid>https://orcid.org/0000-0002-8787-8486</orcidid><oa>free_for_read</oa></addata></record>
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subjects Adipose tissue
Adult
Aged
Alcoholic beverages
Alignment
Apoptosis
Assaying
Biochemistry
Bioinformatics
Biology and life sciences
Biomedical materials
Bisulfite
Blood
Blood cells
Body mass
Body mass index
Cancer
Case-Control Studies
CD4 antigen
Cell death
Computer programs
Correlation
CpG Islands
Cross-Sectional Studies
Deoxyribonucleic acid
Diabetes
Diabetes mellitus
Diabetes Mellitus, Type 2 - blood
Diabetes Mellitus, Type 2 - genetics
Diabetes Mellitus, Type 2 - metabolism
Diabetics
Diagnosis
Diet
DNA
DNA Methylation
Drugs
Epidemiology
Epigenesis, Genetic
Epigenetics
Fasting
Female
Females
Food intake
Gene expression
Genetic testing
Genetics
Genomes
Glucose
Glucose Tolerance Test
Health aspects
Health care
Heart
Homeostasis
Hormones
Human behavior
Humans
Hyperglycemia
Hyperglycemia - blood
Hyperglycemia - genetics
Hypoxia
Ingestion
Insulin
Insulin resistance
Islet cells
Islets of Langerhans - metabolism
Leukemia
Leukocytes
Longitudinal Studies
Lungs
Male
Males
Medicine and Health Sciences
Methylation
Middle Aged
Nucleotide sequence
Obesity
Prospective Studies
Replication
Ribonucleic acid
RNA
RNA-Binding Proteins - genetics
Rodents
Science
Stem cells
Tobacco smoking
Transplantation
Transplants & implants
title Differential DNA methylation of MSI2 and its correlation with diabetic traits
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