Different adaptation strategies of two citrus scion/rootstock combinations in response to drought stress
Scion/rootstock interaction is important for plant development and for breeding programs. In this context, polyploid rootstocks presented several advantages, mainly in relation to biotic and abiotic stresses. Here we analyzed the response to drought of two different scion/rootstock combinations pres...
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description | Scion/rootstock interaction is important for plant development and for breeding programs. In this context, polyploid rootstocks presented several advantages, mainly in relation to biotic and abiotic stresses. Here we analyzed the response to drought of two different scion/rootstock combinations presenting different polyploidy: the diploid (2x) and autotetraploid (4x) Rangpur lime (Citrus limonia, Osbeck) rootstocks grafted with 2x Valencia Delta sweet orange (Citrus sinensis) scions, named V/2xRL and V/4xRL, respectively. Based on previous gene expression data, we developed an interactomic approach to identify proteins involved in V/2xRL and V/4xRL response to drought. A main interactomic network containing 3,830 nodes and 97,652 edges was built from V/2xRL and V/4xRL data. Exclusive proteins of the V/2xRL and V/4xRL networks (2,056 and 1,001, respectively), as well as common to both networks (773) were identified. Functional clusters were obtained and two models of drought stress response for the V/2xRL and V/4xRL genotypes were designed. Even if the V/2xRL plant implement some tolerance mechanisms, the global plant response to drought was rapid and quickly exhaustive resulting in a general tendency to dehydration avoidance, which presented some advantage in short and strong drought stress conditions, but which, in long terms, does not allow the plant survival. At the contrary, the V/4xRL plants presented a response which strong impacts on development but that present some advantages in case of prolonged drought. Finally, some specific proteins, which presented high centrality on interactomic analysis were identified as good candidates for subsequent functional analysis of citrus genes related to drought response, as well as be good markers of one or another physiological mechanism implemented by the plants. |
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In this context, polyploid rootstocks presented several advantages, mainly in relation to biotic and abiotic stresses. Here we analyzed the response to drought of two different scion/rootstock combinations presenting different polyploidy: the diploid (2x) and autotetraploid (4x) Rangpur lime (Citrus limonia, Osbeck) rootstocks grafted with 2x Valencia Delta sweet orange (Citrus sinensis) scions, named V/2xRL and V/4xRL, respectively. Based on previous gene expression data, we developed an interactomic approach to identify proteins involved in V/2xRL and V/4xRL response to drought. A main interactomic network containing 3,830 nodes and 97,652 edges was built from V/2xRL and V/4xRL data. Exclusive proteins of the V/2xRL and V/4xRL networks (2,056 and 1,001, respectively), as well as common to both networks (773) were identified. Functional clusters were obtained and two models of drought stress response for the V/2xRL and V/4xRL genotypes were designed. Even if the V/2xRL plant implement some tolerance mechanisms, the global plant response to drought was rapid and quickly exhaustive resulting in a general tendency to dehydration avoidance, which presented some advantage in short and strong drought stress conditions, but which, in long terms, does not allow the plant survival. At the contrary, the V/4xRL plants presented a response which strong impacts on development but that present some advantages in case of prolonged drought. Finally, some specific proteins, which presented high centrality on interactomic analysis were identified as good candidates for subsequent functional analysis of citrus genes related to drought response, as well as be good markers of one or another physiological mechanism implemented by the plants.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0177993</identifier><identifier>PMID: 28545114</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Abscisic acid ; Acclimation ; Acclimatization ; Acid production ; Adaptation, Physiological ; Adaptations ; Age ; Alternative oxidase ; Analysis ; Autotetraploid ; Biochemistry ; Biodegradation ; Bioinformatics ; Biology and Life Sciences ; Botany ; Breeding ; Calcium ; Calcium channels ; Calcium signalling ; Cell culture ; Chlorophyll ; Citrus ; Citrus - genetics ; Citrus - growth & development ; Citrus - metabolism ; Citrus fruits ; Citrus sinensis ; Competition ; Computer and Information Sciences ; Conductance ; Corn ; Cultivars ; Defensive behavior ; Degradation ; Dehydration ; Drought ; Droughts ; Ecology and Environmental Sciences ; Engineering ; Enzymes ; Exposure ; Flavonoids ; Gene expression ; Gene Expression Profiling ; Gene Expression Regulation, Plant ; Genotypes ; Homeostasis ; Hormones ; Inhibition ; Ion channels ; Irrigation ; Leaves ; Lime ; Metabolism ; Metabolites ; Multiplication ; Photosynthesis ; Physiology ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plant Roots - genetics ; Plant Roots - growth & development ; Plant Roots - metabolism ; Plant sciences ; Plant stress ; Plants ; Pollen ; Polyamines ; Polyploidy ; Protein Interaction Maps ; Proteins ; Regulators ; Research and Analysis Methods ; Respiration ; Senescence ; Sensors ; Signal transduction ; Transpiration</subject><ispartof>PloS one, 2017-05, Vol.12 (5), p.e0177993-e0177993</ispartof><rights>COPYRIGHT 2017 Public Library of Science</rights><rights>2017 Dutra de Souza et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2017 Dutra de Souza et al 2017 Dutra de Souza et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-2036962e57701cde59c3c02225fa1bd491a18ac602b17d41a2fff08e2af8027a3</citedby><cites>FETCH-LOGICAL-c692t-2036962e57701cde59c3c02225fa1bd491a18ac602b17d41a2fff08e2af8027a3</cites><orcidid>0000-0002-9031-362X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435350/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435350/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2102,2928,23866,27924,27925,53791,53793,79600,79601</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28545114$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Aroca, Ricardo</contributor><creatorcontrib>Dutra de Souza, Joadson</creatorcontrib><creatorcontrib>de Andrade Silva, Edson Mario</creatorcontrib><creatorcontrib>Coelho Filho, Mauricio Antônio</creatorcontrib><creatorcontrib>Morillon, Raphaël</creatorcontrib><creatorcontrib>Bonatto, Diego</creatorcontrib><creatorcontrib>Micheli, Fabienne</creatorcontrib><creatorcontrib>da Silva Gesteira, Abelmon</creatorcontrib><title>Different adaptation strategies of two citrus scion/rootstock combinations in response to drought stress</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Scion/rootstock interaction is important for plant development and for breeding programs. In this context, polyploid rootstocks presented several advantages, mainly in relation to biotic and abiotic stresses. Here we analyzed the response to drought of two different scion/rootstock combinations presenting different polyploidy: the diploid (2x) and autotetraploid (4x) Rangpur lime (Citrus limonia, Osbeck) rootstocks grafted with 2x Valencia Delta sweet orange (Citrus sinensis) scions, named V/2xRL and V/4xRL, respectively. Based on previous gene expression data, we developed an interactomic approach to identify proteins involved in V/2xRL and V/4xRL response to drought. A main interactomic network containing 3,830 nodes and 97,652 edges was built from V/2xRL and V/4xRL data. Exclusive proteins of the V/2xRL and V/4xRL networks (2,056 and 1,001, respectively), as well as common to both networks (773) were identified. Functional clusters were obtained and two models of drought stress response for the V/2xRL and V/4xRL genotypes were designed. Even if the V/2xRL plant implement some tolerance mechanisms, the global plant response to drought was rapid and quickly exhaustive resulting in a general tendency to dehydration avoidance, which presented some advantage in short and strong drought stress conditions, but which, in long terms, does not allow the plant survival. At the contrary, the V/4xRL plants presented a response which strong impacts on development but that present some advantages in case of prolonged drought. Finally, some specific proteins, which presented high centrality on interactomic analysis were identified as good candidates for subsequent functional analysis of citrus genes related to drought response, as well as be good markers of one or another physiological mechanism implemented by the plants.</description><subject>Abscisic acid</subject><subject>Acclimation</subject><subject>Acclimatization</subject><subject>Acid production</subject><subject>Adaptation, Physiological</subject><subject>Adaptations</subject><subject>Age</subject><subject>Alternative oxidase</subject><subject>Analysis</subject><subject>Autotetraploid</subject><subject>Biochemistry</subject><subject>Biodegradation</subject><subject>Bioinformatics</subject><subject>Biology and Life Sciences</subject><subject>Botany</subject><subject>Breeding</subject><subject>Calcium</subject><subject>Calcium channels</subject><subject>Calcium signalling</subject><subject>Cell culture</subject><subject>Chlorophyll</subject><subject>Citrus</subject><subject>Citrus - genetics</subject><subject>Citrus - growth & development</subject><subject>Citrus - metabolism</subject><subject>Citrus fruits</subject><subject>Citrus sinensis</subject><subject>Competition</subject><subject>Computer and Information Sciences</subject><subject>Conductance</subject><subject>Corn</subject><subject>Cultivars</subject><subject>Defensive behavior</subject><subject>Degradation</subject><subject>Dehydration</subject><subject>Drought</subject><subject>Droughts</subject><subject>Ecology and Environmental Sciences</subject><subject>Engineering</subject><subject>Enzymes</subject><subject>Exposure</subject><subject>Flavonoids</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genotypes</subject><subject>Homeostasis</subject><subject>Hormones</subject><subject>Inhibition</subject><subject>Ion channels</subject><subject>Irrigation</subject><subject>Leaves</subject><subject>Lime</subject><subject>Metabolism</subject><subject>Metabolites</subject><subject>Multiplication</subject><subject>Photosynthesis</subject><subject>Physiology</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Plant Roots - genetics</subject><subject>Plant Roots - growth & development</subject><subject>Plant Roots - metabolism</subject><subject>Plant sciences</subject><subject>Plant stress</subject><subject>Plants</subject><subject>Pollen</subject><subject>Polyamines</subject><subject>Polyploidy</subject><subject>Protein Interaction Maps</subject><subject>Proteins</subject><subject>Regulators</subject><subject>Research and Analysis Methods</subject><subject>Respiration</subject><subject>Senescence</subject><subject>Sensors</subject><subject>Signal 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adaptation strategies of two citrus scion/rootstock combinations in response to drought stress</title><author>Dutra de Souza, Joadson ; de Andrade Silva, Edson Mario ; Coelho Filho, Mauricio Antônio ; Morillon, Raphaël ; Bonatto, Diego ; Micheli, Fabienne ; da Silva Gesteira, Abelmon</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c692t-2036962e57701cde59c3c02225fa1bd491a18ac602b17d41a2fff08e2af8027a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Abscisic acid</topic><topic>Acclimation</topic><topic>Acclimatization</topic><topic>Acid production</topic><topic>Adaptation, Physiological</topic><topic>Adaptations</topic><topic>Age</topic><topic>Alternative oxidase</topic><topic>Analysis</topic><topic>Autotetraploid</topic><topic>Biochemistry</topic><topic>Biodegradation</topic><topic>Bioinformatics</topic><topic>Biology and Life Sciences</topic><topic>Botany</topic><topic>Breeding</topic><topic>Calcium</topic><topic>Calcium channels</topic><topic>Calcium signalling</topic><topic>Cell culture</topic><topic>Chlorophyll</topic><topic>Citrus</topic><topic>Citrus - genetics</topic><topic>Citrus - growth & development</topic><topic>Citrus - metabolism</topic><topic>Citrus fruits</topic><topic>Citrus sinensis</topic><topic>Competition</topic><topic>Computer and Information Sciences</topic><topic>Conductance</topic><topic>Corn</topic><topic>Cultivars</topic><topic>Defensive behavior</topic><topic>Degradation</topic><topic>Dehydration</topic><topic>Drought</topic><topic>Droughts</topic><topic>Ecology and Environmental Sciences</topic><topic>Engineering</topic><topic>Enzymes</topic><topic>Exposure</topic><topic>Flavonoids</topic><topic>Gene expression</topic><topic>Gene Expression Profiling</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genotypes</topic><topic>Homeostasis</topic><topic>Hormones</topic><topic>Inhibition</topic><topic>Ion channels</topic><topic>Irrigation</topic><topic>Leaves</topic><topic>Lime</topic><topic>Metabolism</topic><topic>Metabolites</topic><topic>Multiplication</topic><topic>Photosynthesis</topic><topic>Physiology</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Plant Roots - genetics</topic><topic>Plant Roots - growth & development</topic><topic>Plant Roots - metabolism</topic><topic>Plant sciences</topic><topic>Plant stress</topic><topic>Plants</topic><topic>Pollen</topic><topic>Polyamines</topic><topic>Polyploidy</topic><topic>Protein Interaction Maps</topic><topic>Proteins</topic><topic>Regulators</topic><topic>Research and Analysis Methods</topic><topic>Respiration</topic><topic>Senescence</topic><topic>Sensors</topic><topic>Signal 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Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Dutra de Souza, Joadson</au><au>de Andrade Silva, Edson Mario</au><au>Coelho Filho, Mauricio Antônio</au><au>Morillon, Raphaël</au><au>Bonatto, Diego</au><au>Micheli, Fabienne</au><au>da Silva Gesteira, Abelmon</au><au>Aroca, Ricardo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Different adaptation strategies of two citrus scion/rootstock combinations in response to drought stress</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2017-05-17</date><risdate>2017</risdate><volume>12</volume><issue>5</issue><spage>e0177993</spage><epage>e0177993</epage><pages>e0177993-e0177993</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Scion/rootstock interaction is important for plant development and for breeding programs. In this context, polyploid rootstocks presented several advantages, mainly in relation to biotic and abiotic stresses. Here we analyzed the response to drought of two different scion/rootstock combinations presenting different polyploidy: the diploid (2x) and autotetraploid (4x) Rangpur lime (Citrus limonia, Osbeck) rootstocks grafted with 2x Valencia Delta sweet orange (Citrus sinensis) scions, named V/2xRL and V/4xRL, respectively. Based on previous gene expression data, we developed an interactomic approach to identify proteins involved in V/2xRL and V/4xRL response to drought. A main interactomic network containing 3,830 nodes and 97,652 edges was built from V/2xRL and V/4xRL data. Exclusive proteins of the V/2xRL and V/4xRL networks (2,056 and 1,001, respectively), as well as common to both networks (773) were identified. Functional clusters were obtained and two models of drought stress response for the V/2xRL and V/4xRL genotypes were designed. Even if the V/2xRL plant implement some tolerance mechanisms, the global plant response to drought was rapid and quickly exhaustive resulting in a general tendency to dehydration avoidance, which presented some advantage in short and strong drought stress conditions, but which, in long terms, does not allow the plant survival. At the contrary, the V/4xRL plants presented a response which strong impacts on development but that present some advantages in case of prolonged drought. Finally, some specific proteins, which presented high centrality on interactomic analysis were identified as good candidates for subsequent functional analysis of citrus genes related to drought response, as well as be good markers of one or another physiological mechanism implemented by the plants.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>28545114</pmid><doi>10.1371/journal.pone.0177993</doi><tpages>e0177993</tpages><orcidid>https://orcid.org/0000-0002-9031-362X</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1932-6203 |
ispartof | PloS one, 2017-05, Vol.12 (5), p.e0177993-e0177993 |
issn | 1932-6203 1932-6203 |
language | eng |
recordid | cdi_plos_journals_1899788873 |
source | MEDLINE; DOAJ Directory of Open Access Journals; Public Library of Science (PLoS) Journals Open Access; EZB-FREE-00999 freely available EZB journals; PubMed Central; Free Full-Text Journals in Chemistry |
subjects | Abscisic acid Acclimation Acclimatization Acid production Adaptation, Physiological Adaptations Age Alternative oxidase Analysis Autotetraploid Biochemistry Biodegradation Bioinformatics Biology and Life Sciences Botany Breeding Calcium Calcium channels Calcium signalling Cell culture Chlorophyll Citrus Citrus - genetics Citrus - growth & development Citrus - metabolism Citrus fruits Citrus sinensis Competition Computer and Information Sciences Conductance Corn Cultivars Defensive behavior Degradation Dehydration Drought Droughts Ecology and Environmental Sciences Engineering Enzymes Exposure Flavonoids Gene expression Gene Expression Profiling Gene Expression Regulation, Plant Genotypes Homeostasis Hormones Inhibition Ion channels Irrigation Leaves Lime Metabolism Metabolites Multiplication Photosynthesis Physiology Plant Proteins - genetics Plant Proteins - metabolism Plant Roots - genetics Plant Roots - growth & development Plant Roots - metabolism Plant sciences Plant stress Plants Pollen Polyamines Polyploidy Protein Interaction Maps Proteins Regulators Research and Analysis Methods Respiration Senescence Sensors Signal transduction Transpiration |
title | Different adaptation strategies of two citrus scion/rootstock combinations in response to drought stress |
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