Mutation Accumulation in an Asexual Relative of Arabidopsis
Asexual populations experience weaker responses to natural selection, which causes deleterious mutations to accumulate over time. Additionally, stochastic loss of individuals free of deleterious mutations can lead to an irreversible increase in mutational load in asexuals (the "click" in M...
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description | Asexual populations experience weaker responses to natural selection, which causes deleterious mutations to accumulate over time. Additionally, stochastic loss of individuals free of deleterious mutations can lead to an irreversible increase in mutational load in asexuals (the "click" in Muller's Ratchet). Here we report on the genomic divergence and distribution of mutations across eight sympatric pairs of sexual and apomictic (asexual) Boechera (Brassicaceae) genotypes. We show that apomicts harbor a greater number of derived mutations than sympatric sexual genotypes. Furthermore, in phylogenetically constrained sites that are subject to contemporary purifying selection, the ancestral, conserved allele is more likely to be retained in sexuals than apomicts. These results indicate that apomictic lineages accumulate mutations at otherwise conserved sites more often than sexuals, and support the conclusion that deleterious mutation accumulation can be a powerful force in the evolution of asexual higher plants. |
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Additionally, stochastic loss of individuals free of deleterious mutations can lead to an irreversible increase in mutational load in asexuals (the "click" in Muller's Ratchet). Here we report on the genomic divergence and distribution of mutations across eight sympatric pairs of sexual and apomictic (asexual) Boechera (Brassicaceae) genotypes. We show that apomicts harbor a greater number of derived mutations than sympatric sexual genotypes. Furthermore, in phylogenetically constrained sites that are subject to contemporary purifying selection, the ancestral, conserved allele is more likely to be retained in sexuals than apomicts. These results indicate that apomictic lineages accumulate mutations at otherwise conserved sites more often than sexuals, and support the conclusion that deleterious mutation accumulation can be a powerful force in the evolution of asexual higher plants.</description><identifier>ISSN: 1553-7404</identifier><identifier>ISSN: 1553-7390</identifier><identifier>EISSN: 1553-7404</identifier><identifier>DOI: 10.1371/journal.pgen.1006550</identifier><identifier>PMID: 28068346</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Arabidopsis ; Arabidopsis thaliana ; Biology and Life Sciences ; Brassicaceae ; Brassicaceae - classification ; Brassicaceae - genetics ; Endangered & extinct species ; Evolution, Molecular ; Evolutionary biology ; Funding ; Gene mutation ; Genetic aspects ; Genome, Plant ; Genomes ; Haplotypes ; Mutation ; Mutation Rate ; Phylogeny ; Physiological aspects ; Protection and preservation ; Reproduction, Asexual ; Research and Analysis Methods ; Selection, Genetic ; Studies</subject><ispartof>PLoS genetics, 2017-01, Vol.13 (1), p.e1006550-e1006550</ispartof><rights>COPYRIGHT 2017 Public Library of Science</rights><rights>2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: . PLoS Genet 13(1): e1006550. doi:10.1371/journal.pgen.1006550</rights><rights>2017 Lovell et al 2017 Lovell et al</rights><rights>2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: . 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Additionally, stochastic loss of individuals free of deleterious mutations can lead to an irreversible increase in mutational load in asexuals (the "click" in Muller's Ratchet). Here we report on the genomic divergence and distribution of mutations across eight sympatric pairs of sexual and apomictic (asexual) Boechera (Brassicaceae) genotypes. We show that apomicts harbor a greater number of derived mutations than sympatric sexual genotypes. Furthermore, in phylogenetically constrained sites that are subject to contemporary purifying selection, the ancestral, conserved allele is more likely to be retained in sexuals than apomicts. These results indicate that apomictic lineages accumulate mutations at otherwise conserved sites more often than sexuals, and support the conclusion that deleterious mutation accumulation can be a powerful force in the evolution of asexual higher plants.</description><subject>Arabidopsis</subject><subject>Arabidopsis thaliana</subject><subject>Biology and Life Sciences</subject><subject>Brassicaceae</subject><subject>Brassicaceae - classification</subject><subject>Brassicaceae - genetics</subject><subject>Endangered & extinct species</subject><subject>Evolution, Molecular</subject><subject>Evolutionary biology</subject><subject>Funding</subject><subject>Gene mutation</subject><subject>Genetic aspects</subject><subject>Genome, Plant</subject><subject>Genomes</subject><subject>Haplotypes</subject><subject>Mutation</subject><subject>Mutation Rate</subject><subject>Phylogeny</subject><subject>Physiological aspects</subject><subject>Protection and preservation</subject><subject>Reproduction, Asexual</subject><subject>Research and Analysis Methods</subject><subject>Selection, Genetic</subject><subject>Studies</subject><issn>1553-7404</issn><issn>1553-7390</issn><issn>1553-7404</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>DOA</sourceid><recordid>eNqVk11r2zAUhs1YWbts_2BsgcFYL5LpWzKDQSj7CHQrdB-3QpGPHQXFSi27dP9-8uKWePSiwxeyjp7z6rySTpa9wGiOqcTvNqFrauPnuwrqOUZIcI4eZSeYczqTDLHHB__H2dMYNwhRrnL5JDsmCglFmTjJ3n_tWtO6UE8X1nbbzu8nrp6aFIpw0xk_vYQ-fA3TUE4XjVm5Iuyii8-yo9L4CM-HcZL9_PTxx9mX2fnF5-XZ4nxmFeHtrFTKUsyRkNwSDMwwiWwuMSuYBeA5IlTkCElqjcVC2qLEkgsmS8QJNcnCJHu11935EPXgO2qsRM6JEsnJJFvuiSKYjd41bmua3zoYp_8GQlNp07TOetAA2FCKmFqlQjASBhBnKqdFwTEneZm0Pgy7dastFBbqtjF-JDpeqd1aV-FacyKwZCQJvB0EmnDVQWz11kUL3psaQtfXLYnCSlH5AJRLKnOJeouv_0HvP4iBqkzy6uoypBJtL6oXLKeS54TQRM3vodJXwNbZUEPpUnyUcDpKSEwLN21luhj18vvlf7DfHs5e_Bqzbw7YNRjfrmPwXf9e4xhke9A2IcYGyru7w0j3rXN7crpvHT20Tkp7eXjvd0m3vUL_AO6vDyI</recordid><startdate>20170109</startdate><enddate>20170109</enddate><creator>Lovell, John T</creator><creator>Williamson, Robert J</creator><creator>Wright, Stephen I</creator><creator>McKay, John K</creator><creator>Sharbel, Timothy F</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISN</scope><scope>ISR</scope><scope>3V.</scope><scope>7QP</scope><scope>7QR</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-3450-2733</orcidid><orcidid>https://orcid.org/0000-0002-8938-1166</orcidid><orcidid>https://orcid.org/0000-0001-9732-0964</orcidid></search><sort><creationdate>20170109</creationdate><title>Mutation Accumulation in an Asexual Relative of Arabidopsis</title><author>Lovell, John T ; Williamson, Robert J ; Wright, Stephen I ; McKay, John K ; Sharbel, Timothy F</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c825t-f88c3150675c21e4a470c9714d4cee59023690073cac167cdf175647f0523a553</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Arabidopsis</topic><topic>Arabidopsis thaliana</topic><topic>Biology and Life Sciences</topic><topic>Brassicaceae</topic><topic>Brassicaceae - classification</topic><topic>Brassicaceae - genetics</topic><topic>Endangered & extinct species</topic><topic>Evolution, Molecular</topic><topic>Evolutionary biology</topic><topic>Funding</topic><topic>Gene mutation</topic><topic>Genetic aspects</topic><topic>Genome, Plant</topic><topic>Genomes</topic><topic>Haplotypes</topic><topic>Mutation</topic><topic>Mutation Rate</topic><topic>Phylogeny</topic><topic>Physiological aspects</topic><topic>Protection and preservation</topic><topic>Reproduction, Asexual</topic><topic>Research and Analysis Methods</topic><topic>Selection, Genetic</topic><topic>Studies</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lovell, John T</creatorcontrib><creatorcontrib>Williamson, Robert J</creatorcontrib><creatorcontrib>Wright, Stephen I</creatorcontrib><creatorcontrib>McKay, John K</creatorcontrib><creatorcontrib>Sharbel, Timothy F</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Canada</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - 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Additionally, stochastic loss of individuals free of deleterious mutations can lead to an irreversible increase in mutational load in asexuals (the "click" in Muller's Ratchet). Here we report on the genomic divergence and distribution of mutations across eight sympatric pairs of sexual and apomictic (asexual) Boechera (Brassicaceae) genotypes. We show that apomicts harbor a greater number of derived mutations than sympatric sexual genotypes. Furthermore, in phylogenetically constrained sites that are subject to contemporary purifying selection, the ancestral, conserved allele is more likely to be retained in sexuals than apomicts. 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subjects | Arabidopsis Arabidopsis thaliana Biology and Life Sciences Brassicaceae Brassicaceae - classification Brassicaceae - genetics Endangered & extinct species Evolution, Molecular Evolutionary biology Funding Gene mutation Genetic aspects Genome, Plant Genomes Haplotypes Mutation Mutation Rate Phylogeny Physiological aspects Protection and preservation Reproduction, Asexual Research and Analysis Methods Selection, Genetic Studies |
title | Mutation Accumulation in an Asexual Relative of Arabidopsis |
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