Climate, Demography, and Zoogeography Predict Introgression Thresholds in Salmonid Hybrid Zones in Rocky Mountain Streams
Among the many threats posed by invasions of nonnative species is introgressive hybridization, which can lead to the genomic extinction of native taxa. This phenomenon is regarded as common and perhaps inevitable among native cutthroat trout and introduced rainbow trout in western North America, des...
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creator | Young, Michael K Isaak, Daniel J McKelvey, Kevin S Wilcox, Taylor M Bingham, Daniel M Pilgrim, Kristine L Carim, Kellie J Campbell, Matthew R Corsi, Matthew P Horan, Dona L Nagel, David E Schwartz, Michael K |
description | Among the many threats posed by invasions of nonnative species is introgressive hybridization, which can lead to the genomic extinction of native taxa. This phenomenon is regarded as common and perhaps inevitable among native cutthroat trout and introduced rainbow trout in western North America, despite that these taxa naturally co-occur in some locations. We conducted a synthetic analysis of 13,315 genotyped fish from 558 sites by building logistic regression models using data from geospatial stream databases and from 12 published studies of hybridization to assess whether environmental covariates could explain levels of introgression between westslope cutthroat trout and rainbow trout in the U.S. northern Rocky Mountains. A consensus model performed well (AUC, 0.78-0.86; classification success, 72-82%; 10-fold cross validation, 70-82%) and predicted that rainbow trout introgression was significantly associated with warmer water temperatures, larger streams, proximity to warmer habitats and to recent sources of rainbow trout propagules, presence within the historical range of rainbow trout, and locations further east. Assuming that water temperatures will continue to rise in response to climate change and that levels of introgression outside the historical range of rainbow trout will equilibrate with those inside that range, we applied six scenarios across a 55,234-km stream network that forecast 9.5-74.7% declines in the amount of habitat occupied by westslope cutthroat trout populations of conservation value, but not the wholesale loss of such populations. We conclude that introgression between these taxa is predictably related to environmental conditions, many of which can be manipulated to foster largely genetically intact populations of westslope cutthroat trout and help managers prioritize conservation activities. |
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This phenomenon is regarded as common and perhaps inevitable among native cutthroat trout and introduced rainbow trout in western North America, despite that these taxa naturally co-occur in some locations. We conducted a synthetic analysis of 13,315 genotyped fish from 558 sites by building logistic regression models using data from geospatial stream databases and from 12 published studies of hybridization to assess whether environmental covariates could explain levels of introgression between westslope cutthroat trout and rainbow trout in the U.S. northern Rocky Mountains. A consensus model performed well (AUC, 0.78-0.86; classification success, 72-82%; 10-fold cross validation, 70-82%) and predicted that rainbow trout introgression was significantly associated with warmer water temperatures, larger streams, proximity to warmer habitats and to recent sources of rainbow trout propagules, presence within the historical range of rainbow trout, and locations further east. Assuming that water temperatures will continue to rise in response to climate change and that levels of introgression outside the historical range of rainbow trout will equilibrate with those inside that range, we applied six scenarios across a 55,234-km stream network that forecast 9.5-74.7% declines in the amount of habitat occupied by westslope cutthroat trout populations of conservation value, but not the wholesale loss of such populations. We conclude that introgression between these taxa is predictably related to environmental conditions, many of which can be manipulated to foster largely genetically intact populations of westslope cutthroat trout and help managers prioritize conservation activities.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0163563</identifier><identifier>PMID: 27828980</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Analysis ; Animals ; Biology and Life Sciences ; Climate ; Climate Change ; Conservation ; Conservation of Natural Resources - methods ; Creeks & streams ; Cyprinodon pecosensis ; Cyprinodon variegatus ; Demography ; Earth Sciences ; Ecology and Environmental Sciences ; Ecosystem ; Endangered & extinct species ; Environmental conditions ; Environmental protection ; Extinction ; Fish populations ; Fish stocking ; Fishes ; Fishing ; Genetics, Population ; Genomes ; Genomics ; Genotype ; Geography ; Geospatial data ; Global temperature changes ; Greenhouse effect ; Hybrid zones ; Hybridization ; Hybridization, Genetic ; Idaho ; Invasive species ; Logistic Models ; Montana ; Mountain streams ; Mountains ; Nonnative species ; Oncorhynchus - classification ; Oncorhynchus - genetics ; Oncorhynchus - physiology ; Oncorhynchus clarkii ; Oncorhynchus clarkii clarkii ; Oncorhynchus clarkii lewisi ; Oncorhynchus mykiss ; Oncorhynchus mykiss - genetics ; Oncorhynchus mykiss - physiology ; Population genetics ; Populations ; Propagules ; Protection and preservation ; Regression analysis ; Regression models ; Rivers ; Salmonidae ; Salvelinus confluentus ; Salvelinus fontinalis ; Species extinction ; Streams ; Taxa ; Trout ; Water temperature</subject><ispartof>PloS one, 2016-11, Vol.11 (11), p.e0163563-e0163563</ispartof><rights>COPYRIGHT 2016 Public Library of Science</rights><rights>This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication: https://creativecommons.org/publicdomain/zero/1.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c725t-a17a372f19497b20b0e90778341447d24e9d735947035389c1c43c37fdf543673</citedby><cites>FETCH-LOGICAL-c725t-a17a372f19497b20b0e90778341447d24e9d735947035389c1c43c37fdf543673</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5102351/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5102351/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79343,79344</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27828980$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Young, Michael K</creatorcontrib><creatorcontrib>Isaak, Daniel J</creatorcontrib><creatorcontrib>McKelvey, Kevin S</creatorcontrib><creatorcontrib>Wilcox, Taylor M</creatorcontrib><creatorcontrib>Bingham, Daniel M</creatorcontrib><creatorcontrib>Pilgrim, Kristine L</creatorcontrib><creatorcontrib>Carim, Kellie J</creatorcontrib><creatorcontrib>Campbell, Matthew R</creatorcontrib><creatorcontrib>Corsi, Matthew P</creatorcontrib><creatorcontrib>Horan, Dona L</creatorcontrib><creatorcontrib>Nagel, David E</creatorcontrib><creatorcontrib>Schwartz, Michael K</creatorcontrib><title>Climate, Demography, and Zoogeography Predict Introgression Thresholds in Salmonid Hybrid Zones in Rocky Mountain Streams</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Among the many threats posed by invasions of nonnative species is introgressive hybridization, which can lead to the genomic extinction of native taxa. This phenomenon is regarded as common and perhaps inevitable among native cutthroat trout and introduced rainbow trout in western North America, despite that these taxa naturally co-occur in some locations. We conducted a synthetic analysis of 13,315 genotyped fish from 558 sites by building logistic regression models using data from geospatial stream databases and from 12 published studies of hybridization to assess whether environmental covariates could explain levels of introgression between westslope cutthroat trout and rainbow trout in the U.S. northern Rocky Mountains. A consensus model performed well (AUC, 0.78-0.86; classification success, 72-82%; 10-fold cross validation, 70-82%) and predicted that rainbow trout introgression was significantly associated with warmer water temperatures, larger streams, proximity to warmer habitats and to recent sources of rainbow trout propagules, presence within the historical range of rainbow trout, and locations further east. Assuming that water temperatures will continue to rise in response to climate change and that levels of introgression outside the historical range of rainbow trout will equilibrate with those inside that range, we applied six scenarios across a 55,234-km stream network that forecast 9.5-74.7% declines in the amount of habitat occupied by westslope cutthroat trout populations of conservation value, but not the wholesale loss of such populations. We conclude that introgression between these taxa is predictably related to environmental conditions, many of which can be manipulated to foster largely genetically intact populations of westslope cutthroat trout and help managers prioritize conservation activities.</description><subject>Analysis</subject><subject>Animals</subject><subject>Biology and Life Sciences</subject><subject>Climate</subject><subject>Climate Change</subject><subject>Conservation</subject><subject>Conservation of Natural Resources - methods</subject><subject>Creeks & streams</subject><subject>Cyprinodon pecosensis</subject><subject>Cyprinodon variegatus</subject><subject>Demography</subject><subject>Earth Sciences</subject><subject>Ecology and Environmental Sciences</subject><subject>Ecosystem</subject><subject>Endangered & extinct species</subject><subject>Environmental conditions</subject><subject>Environmental protection</subject><subject>Extinction</subject><subject>Fish populations</subject><subject>Fish stocking</subject><subject>Fishes</subject><subject>Fishing</subject><subject>Genetics, Population</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Genotype</subject><subject>Geography</subject><subject>Geospatial data</subject><subject>Global temperature changes</subject><subject>Greenhouse effect</subject><subject>Hybrid zones</subject><subject>Hybridization</subject><subject>Hybridization, Genetic</subject><subject>Idaho</subject><subject>Invasive species</subject><subject>Logistic Models</subject><subject>Montana</subject><subject>Mountain streams</subject><subject>Mountains</subject><subject>Nonnative species</subject><subject>Oncorhynchus - classification</subject><subject>Oncorhynchus - genetics</subject><subject>Oncorhynchus - physiology</subject><subject>Oncorhynchus clarkii</subject><subject>Oncorhynchus clarkii clarkii</subject><subject>Oncorhynchus clarkii lewisi</subject><subject>Oncorhynchus mykiss</subject><subject>Oncorhynchus mykiss - genetics</subject><subject>Oncorhynchus mykiss - physiology</subject><subject>Population genetics</subject><subject>Populations</subject><subject>Propagules</subject><subject>Protection and preservation</subject><subject>Regression analysis</subject><subject>Regression models</subject><subject>Rivers</subject><subject>Salmonidae</subject><subject>Salvelinus confluentus</subject><subject>Salvelinus fontinalis</subject><subject>Species extinction</subject><subject>Streams</subject><subject>Taxa</subject><subject>Trout</subject><subject>Water temperature</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNqNk01v1DAQhiMEomXhHyCIhIRA6i7-ShxfkKrloysVFbWFAxfL6ziJWydebAex_x6nm1Yb1EOVg63xM6_H72SS5CUEC4gp_HBle9cJs9jYTi0AzHGW40fJIWQYzXME8OO9_UHyzPsrADJc5PnT5ADRAhWsAIfJdml0K4I6Sj-p1tZObJrtUSq6Mv1lba3GSPrdqVLLkK664GJMea9tl142cddYU_pUd-mFMK3tdJmebNdODwKdujk4t_J6m36zfRfEwAWnROufJ08qYbx6Ma6z5MeXz5fLk_np2dfV8vh0LinKwlxAKjBFFWSE0TUCa6AYoLTABBJCS0QUKynOGKEAx-cxCSXBEtOqrDKCc4pnyeud7sZYz0fXPIcFphljKK6zZLUjSiuu-MZFQ9yWW6H5TcC6mgsXtDSKQ0ohBaQSgBUE5WqNcC4kKRkSKKMKR62P4239ulWlVNEwYSai05NON7y2f3gGAcIZjALvRgFnf_fKB95qL5UxolO2H-omOUEQZcUDUMwgjCWTiL75D73fiJGqRXyr7iobS5SDKD8mNN4McT5Qi3uo-JWq1TI2vdIxPkl4P0mITFB_Qy167_nq4vzh7NnPKft2j22UMKHx1vQh_pt-CpIdKJ313qnqrh8Q8GGYbt3gwzDxcZhi2qv9Xt4l3U4P_gcSBBfd</recordid><startdate>20161109</startdate><enddate>20161109</enddate><creator>Young, Michael K</creator><creator>Isaak, Daniel J</creator><creator>McKelvey, Kevin S</creator><creator>Wilcox, Taylor M</creator><creator>Bingham, Daniel M</creator><creator>Pilgrim, Kristine L</creator><creator>Carim, Kellie J</creator><creator>Campbell, Matthew R</creator><creator>Corsi, Matthew P</creator><creator>Horan, Dona L</creator><creator>Nagel, David E</creator><creator>Schwartz, Michael K</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20161109</creationdate><title>Climate, Demography, and Zoogeography Predict Introgression Thresholds in Salmonid Hybrid Zones in Rocky Mountain Streams</title><author>Young, Michael K ; Isaak, Daniel J ; McKelvey, Kevin S ; Wilcox, Taylor M ; Bingham, Daniel M ; Pilgrim, Kristine L ; Carim, Kellie J ; Campbell, Matthew R ; Corsi, Matthew P ; Horan, Dona L ; Nagel, David E ; Schwartz, Michael K</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c725t-a17a372f19497b20b0e90778341447d24e9d735947035389c1c43c37fdf543673</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Analysis</topic><topic>Animals</topic><topic>Biology and Life Sciences</topic><topic>Climate</topic><topic>Climate Change</topic><topic>Conservation</topic><topic>Conservation of Natural Resources - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Young, Michael K</au><au>Isaak, Daniel J</au><au>McKelvey, Kevin S</au><au>Wilcox, Taylor M</au><au>Bingham, Daniel M</au><au>Pilgrim, Kristine L</au><au>Carim, Kellie J</au><au>Campbell, Matthew R</au><au>Corsi, Matthew P</au><au>Horan, Dona L</au><au>Nagel, David E</au><au>Schwartz, Michael K</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Climate, Demography, and Zoogeography Predict Introgression Thresholds in Salmonid Hybrid Zones in Rocky Mountain Streams</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2016-11-09</date><risdate>2016</risdate><volume>11</volume><issue>11</issue><spage>e0163563</spage><epage>e0163563</epage><pages>e0163563-e0163563</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Among the many threats posed by invasions of nonnative species is introgressive hybridization, which can lead to the genomic extinction of native taxa. This phenomenon is regarded as common and perhaps inevitable among native cutthroat trout and introduced rainbow trout in western North America, despite that these taxa naturally co-occur in some locations. We conducted a synthetic analysis of 13,315 genotyped fish from 558 sites by building logistic regression models using data from geospatial stream databases and from 12 published studies of hybridization to assess whether environmental covariates could explain levels of introgression between westslope cutthroat trout and rainbow trout in the U.S. northern Rocky Mountains. A consensus model performed well (AUC, 0.78-0.86; classification success, 72-82%; 10-fold cross validation, 70-82%) and predicted that rainbow trout introgression was significantly associated with warmer water temperatures, larger streams, proximity to warmer habitats and to recent sources of rainbow trout propagules, presence within the historical range of rainbow trout, and locations further east. Assuming that water temperatures will continue to rise in response to climate change and that levels of introgression outside the historical range of rainbow trout will equilibrate with those inside that range, we applied six scenarios across a 55,234-km stream network that forecast 9.5-74.7% declines in the amount of habitat occupied by westslope cutthroat trout populations of conservation value, but not the wholesale loss of such populations. We conclude that introgression between these taxa is predictably related to environmental conditions, many of which can be manipulated to foster largely genetically intact populations of westslope cutthroat trout and help managers prioritize conservation activities.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>27828980</pmid><doi>10.1371/journal.pone.0163563</doi><tpages>e0163563</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1932-6203 |
ispartof | PloS one, 2016-11, Vol.11 (11), p.e0163563-e0163563 |
issn | 1932-6203 1932-6203 |
language | eng |
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source | Public Library of Science (PLoS) Journals Open Access; MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Free Full-Text Journals in Chemistry |
subjects | Analysis Animals Biology and Life Sciences Climate Climate Change Conservation Conservation of Natural Resources - methods Creeks & streams Cyprinodon pecosensis Cyprinodon variegatus Demography Earth Sciences Ecology and Environmental Sciences Ecosystem Endangered & extinct species Environmental conditions Environmental protection Extinction Fish populations Fish stocking Fishes Fishing Genetics, Population Genomes Genomics Genotype Geography Geospatial data Global temperature changes Greenhouse effect Hybrid zones Hybridization Hybridization, Genetic Idaho Invasive species Logistic Models Montana Mountain streams Mountains Nonnative species Oncorhynchus - classification Oncorhynchus - genetics Oncorhynchus - physiology Oncorhynchus clarkii Oncorhynchus clarkii clarkii Oncorhynchus clarkii lewisi Oncorhynchus mykiss Oncorhynchus mykiss - genetics Oncorhynchus mykiss - physiology Population genetics Populations Propagules Protection and preservation Regression analysis Regression models Rivers Salmonidae Salvelinus confluentus Salvelinus fontinalis Species extinction Streams Taxa Trout Water temperature |
title | Climate, Demography, and Zoogeography Predict Introgression Thresholds in Salmonid Hybrid Zones in Rocky Mountain Streams |
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