Demographic History and Reproductive Output Correlates with Intraspecific Genetic Variation in Seven Species of Indo-Pacific Mangrove Crabs
The spatial distribution and the amount of intraspecific genetic variation of marine organisms are strongly influenced by many biotic and abiotic factors. Comparing biological and genetic data characterizing species living in the same habitat can help to elucidate the processes driving these variati...
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description | The spatial distribution and the amount of intraspecific genetic variation of marine organisms are strongly influenced by many biotic and abiotic factors. Comparing biological and genetic data characterizing species living in the same habitat can help to elucidate the processes driving these variation patterns. Here, we present a comparative multispecies population genetic study on seven mangrove crabs co-occurring in the West Indian Ocean characterized by planktotrophic larvae with similar pelagic larval duration. Our main aim was to investigate whether a suite of biological, behavioural and ecological traits could affect genetic diversities of the study species in combination with historical demographic parameters. As possible current explanatory factors, we used the intertidal micro-habitat colonised by adult populations, various parameters of individual and population fecundity, and the timing of larval release. As the genetic marker, we used partial sequences of cytochrome oxidase subunit I gene. Genetic and ecological data were collected by the authors and/or gathered from primary literature. Permutational multiple regression models and ANOVA tests showed that species density and their reproductive output in combination with historical demographic parameters could explain the intraspecific genetic variation indexes across the seven species. In particular, species producing consistently less eggs per spawning event showed higher values of haplotype diversity. Moreover, Tajima's D parameters well explained the recorded values for haplotype diversity and average γst. We concluded that current intraspecific gene diversities in crabs inhabiting mangrove forests were affected by population fecundity as well as past demographic history. The results were also discussed in terms of management and conservation of fauna in the Western Indian Ocean mangroves. |
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Comparing biological and genetic data characterizing species living in the same habitat can help to elucidate the processes driving these variation patterns. Here, we present a comparative multispecies population genetic study on seven mangrove crabs co-occurring in the West Indian Ocean characterized by planktotrophic larvae with similar pelagic larval duration. Our main aim was to investigate whether a suite of biological, behavioural and ecological traits could affect genetic diversities of the study species in combination with historical demographic parameters. As possible current explanatory factors, we used the intertidal micro-habitat colonised by adult populations, various parameters of individual and population fecundity, and the timing of larval release. As the genetic marker, we used partial sequences of cytochrome oxidase subunit I gene. Genetic and ecological data were collected by the authors and/or gathered from primary literature. Permutational multiple regression models and ANOVA tests showed that species density and their reproductive output in combination with historical demographic parameters could explain the intraspecific genetic variation indexes across the seven species. In particular, species producing consistently less eggs per spawning event showed higher values of haplotype diversity. Moreover, Tajima's D parameters well explained the recorded values for haplotype diversity and average γst. We concluded that current intraspecific gene diversities in crabs inhabiting mangrove forests were affected by population fecundity as well as past demographic history. 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This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2016 Fratini et al 2016 Fratini et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c618t-430dd88afe554c3df2037d5759c7138ba946a0afb7e81acf84ac153910d945bd3</citedby><cites>FETCH-LOGICAL-c618t-430dd88afe554c3df2037d5759c7138ba946a0afb7e81acf84ac153910d945bd3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4933389/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4933389/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79569,79570</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27379532$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fratini, Sara</creatorcontrib><creatorcontrib>Ragionieri, Lapo</creatorcontrib><creatorcontrib>Cannicci, Stefano</creatorcontrib><title>Demographic History and Reproductive Output Correlates with Intraspecific Genetic Variation in Seven Species of Indo-Pacific Mangrove Crabs</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>The spatial distribution and the amount of intraspecific genetic variation of marine organisms are strongly influenced by many biotic and abiotic factors. Comparing biological and genetic data characterizing species living in the same habitat can help to elucidate the processes driving these variation patterns. Here, we present a comparative multispecies population genetic study on seven mangrove crabs co-occurring in the West Indian Ocean characterized by planktotrophic larvae with similar pelagic larval duration. Our main aim was to investigate whether a suite of biological, behavioural and ecological traits could affect genetic diversities of the study species in combination with historical demographic parameters. As possible current explanatory factors, we used the intertidal micro-habitat colonised by adult populations, various parameters of individual and population fecundity, and the timing of larval release. As the genetic marker, we used partial sequences of cytochrome oxidase subunit I gene. Genetic and ecological data were collected by the authors and/or gathered from primary literature. 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genetics</subject><subject>Scylla serrata</subject><subject>Sequence Analysis, DNA</subject><subject>Spatial distribution</subject><subject>Spawning</subject><subject>Species</subject><subject>Species Specificity</subject><subject>Variance analysis</subject><subject>Variation</subject><subject>Wetlands</subject><subject>Wildlife conservation</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNqNkl1v0zAUhiMEYmPwDxBEQkLctPgzcW6QpgJbpaEhvm6tE9tpXaVxsJ2i_Qb-NM6aTS3igps4sp_39TmvT5Y9x2iOaYnfbtzgO2jnvevMHGEuuCAPslNcUTIrCKIPD_5PsichbBDiVBTF4-yElLSsOCWn2e_3ZutWHvq1VfmlDdH5mxw6nX8xvXd6UNHuTH49xH6I-cJ5b1qIJuS_bFznyy56CL1RtknqC9OZmNYf4C1E67rcdvlXszPpOzJJ5Zqk0W72GfaST9CtvEsXLDzU4Wn2qIE2mGfTepZ9__jh2-JydnV9sVycX81UgUWcMYq0FgIawzlTVDepwVLzkleqxFTUULECEDR1aQQG1QgGCnNaYaQrxmtNz7KXe9--dUFOOQaJBcKiIBVCiVjuCe1gI3tvt-BvpAMrbzecX0nwqdfWSAyMAG4QgQIYLwQQTpqKF6XiGjjGyevddNtQb41WZgytPTI9PunsWq7cTrKKUiqqZPBmMvDu52BClFsblGlb6IwbbusWBSdYkP9B08MjiouEvvoL_XcQE7WC1KvtGpdKVKOpPGe8RKzkdKReH1BrA21cB9cO4xCEY5DtQeVdCN409zFgJMepvitCjlMtp6lOsheHEd6L7saY_gH1BvT-</recordid><startdate>20160705</startdate><enddate>20160705</enddate><creator>Fratini, Sara</creator><creator>Ragionieri, Lapo</creator><creator>Cannicci, Stefano</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PHGZM</scope><scope>PHGZT</scope><scope>PIMPY</scope><scope>PJZUB</scope><scope>PKEHL</scope><scope>PPXIY</scope><scope>PQEST</scope><scope>PQGLB</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>7TN</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20160705</creationdate><title>Demographic History and Reproductive Output Correlates with Intraspecific Genetic Variation in Seven Species of Indo-Pacific Mangrove Crabs</title><author>Fratini, Sara ; Ragionieri, Lapo ; Cannicci, Stefano</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c618t-430dd88afe554c3df2037d5759c7138ba946a0afb7e81acf84ac153910d945bd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Abiotic factors</topic><topic>Adults</topic><topic>Analysis of Variance</topic><topic>Animals</topic><topic>Arthropod Proteins - genetics</topic><topic>Biology</topic><topic>Biology and Life Sciences</topic><topic>Brachyura - classification</topic><topic>Brachyura - genetics</topic><topic>Comparative analysis</topic><topic>Conservation</topic><topic>Crabs</topic><topic>Crustaceans</topic><topic>Cytochrome</topic><topic>Decapoda</topic><topic>Demographics</topic><topic>DNA, Mitochondrial - chemistry</topic><topic>DNA, Mitochondrial - genetics</topic><topic>Earth Sciences</topic><topic>Ecological monitoring</topic><topic>Ecology and Environmental Sciences</topic><topic>Ecosystem biology</topic><topic>Ecosystems</topic><topic>Eggs</topic><topic>Electron Transport Complex IV - genetics</topic><topic>Evolution</topic><topic>Fecundity</topic><topic>Female</topic><topic>Fish</topic><topic>Forests</topic><topic>Gene sequencing</topic><topic>Genetic aspects</topic><topic>Genetic diversity</topic><topic>Genetic markers</topic><topic>Genetic Variation</topic><topic>Genetics, Population</topic><topic>Geography</topic><topic>Haplotypes</topic><topic>Indian Ocean</topic><topic>Larvae</topic><topic>Linear Models</topic><topic>Male</topic><topic>Mangrove swamps</topic><topic>Mangroves</topic><topic>Mangroves (Plants)</topic><topic>Marine</topic><topic>Marine organisms</topic><topic>Multiple regression models</topic><topic>Oceans</topic><topic>Ocypodidae</topic><topic>Pacific Ocean</topic><topic>Parameters</topic><topic>People and Places</topic><topic>Phylogeny</topic><topic>Physiological aspects</topic><topic>Population</topic><topic>Population Density</topic><topic>Population genetics</topic><topic>Population studies</topic><topic>Regression analysis</topic><topic>Regression models</topic><topic>Reproduction - 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Comparing biological and genetic data characterizing species living in the same habitat can help to elucidate the processes driving these variation patterns. Here, we present a comparative multispecies population genetic study on seven mangrove crabs co-occurring in the West Indian Ocean characterized by planktotrophic larvae with similar pelagic larval duration. Our main aim was to investigate whether a suite of biological, behavioural and ecological traits could affect genetic diversities of the study species in combination with historical demographic parameters. As possible current explanatory factors, we used the intertidal micro-habitat colonised by adult populations, various parameters of individual and population fecundity, and the timing of larval release. As the genetic marker, we used partial sequences of cytochrome oxidase subunit I gene. Genetic and ecological data were collected by the authors and/or gathered from primary literature. Permutational multiple regression models and ANOVA tests showed that species density and their reproductive output in combination with historical demographic parameters could explain the intraspecific genetic variation indexes across the seven species. In particular, species producing consistently less eggs per spawning event showed higher values of haplotype diversity. Moreover, Tajima's D parameters well explained the recorded values for haplotype diversity and average γst. We concluded that current intraspecific gene diversities in crabs inhabiting mangrove forests were affected by population fecundity as well as past demographic history. The results were also discussed in terms of management and conservation of fauna in the Western Indian Ocean mangroves.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>27379532</pmid><doi>10.1371/journal.pone.0158582</doi><oa>free_for_read</oa></addata></record> |
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subjects | Abiotic factors Adults Analysis of Variance Animals Arthropod Proteins - genetics Biology Biology and Life Sciences Brachyura - classification Brachyura - genetics Comparative analysis Conservation Crabs Crustaceans Cytochrome Decapoda Demographics DNA, Mitochondrial - chemistry DNA, Mitochondrial - genetics Earth Sciences Ecological monitoring Ecology and Environmental Sciences Ecosystem biology Ecosystems Eggs Electron Transport Complex IV - genetics Evolution Fecundity Female Fish Forests Gene sequencing Genetic aspects Genetic diversity Genetic markers Genetic Variation Genetics, Population Geography Haplotypes Indian Ocean Larvae Linear Models Male Mangrove swamps Mangroves Mangroves (Plants) Marine Marine organisms Multiple regression models Oceans Ocypodidae Pacific Ocean Parameters People and Places Phylogeny Physiological aspects Population Population Density Population genetics Population studies Regression analysis Regression models Reproduction - genetics Scylla serrata Sequence Analysis, DNA Spatial distribution Spawning Species Species Specificity Variance analysis Variation Wetlands Wildlife conservation |
title | Demographic History and Reproductive Output Correlates with Intraspecific Genetic Variation in Seven Species of Indo-Pacific Mangrove Crabs |
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