Manipulating the Prion Protein Gene Sequence and Expression Levels with CRISPR/Cas9
The mammalian prion protein (PrP, encoded by Prnp) is most infamous for its central role in prion diseases, invariably fatal neurodegenerative diseases affecting humans, food animals, and animals in the wild. However, PrP is also hypothesized to be an important receptor for toxic protein conformers...
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description | The mammalian prion protein (PrP, encoded by Prnp) is most infamous for its central role in prion diseases, invariably fatal neurodegenerative diseases affecting humans, food animals, and animals in the wild. However, PrP is also hypothesized to be an important receptor for toxic protein conformers in Alzheimer's disease, and is associated with other clinically relevant processes such as cancer and stroke. Thus, key insights into important clinical areas, as well as into understanding PrP functions in normal physiology, can be obtained from studying transgenic mouse models and cell culture systems. However, the Prnp locus is difficult to manipulate by homologous recombination, making modifications of the endogenous locus rarely attempted. Fortunately in recent years genome engineering technologies, like TALENs or CRISPR/Cas9 (CC9), have brought exceptional new possibilities for manipulating Prnp. Herein, we present our observations made during systematic experiments with the CC9 system targeting the endogenous mouse Prnp locus, to either modify sequences or to boost PrP expression using CC9-based synergistic activation mediators (SAMs). It is our hope that this information will aid and encourage researchers to implement gene-targeting techniques into their research program. |
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However, PrP is also hypothesized to be an important receptor for toxic protein conformers in Alzheimer's disease, and is associated with other clinically relevant processes such as cancer and stroke. Thus, key insights into important clinical areas, as well as into understanding PrP functions in normal physiology, can be obtained from studying transgenic mouse models and cell culture systems. However, the Prnp locus is difficult to manipulate by homologous recombination, making modifications of the endogenous locus rarely attempted. Fortunately in recent years genome engineering technologies, like TALENs or CRISPR/Cas9 (CC9), have brought exceptional new possibilities for manipulating Prnp. Herein, we present our observations made during systematic experiments with the CC9 system targeting the endogenous mouse Prnp locus, to either modify sequences or to boost PrP expression using CC9-based synergistic activation mediators (SAMs). It is our hope that this information will aid and encourage researchers to implement gene-targeting techniques into their research program.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0154604</identifier><identifier>PMID: 27128441</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Alzheimer's disease ; Amino acid sequence ; Animal models ; Animals ; Biology and Life Sciences ; Cancer ; Care and treatment ; Cell culture ; Cell Line ; CRISPR ; CRISPR-Cas Systems ; Deoxyribonucleic acid ; DNA ; Efficiency ; Female ; Gene Expression ; Gene Knock-In Techniques - methods ; Gene Targeting - methods ; Genetic engineering ; Genetic Vectors ; Genome editing ; Genomes ; Genomics ; Homologous recombination ; Homology ; Humans ; Loci ; Male ; Medicine and Health Sciences ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Mutation ; Neuroblastoma ; Neurodegeneration ; Neurodegenerative diseases ; Neurological diseases ; Physiology ; Prion diseases ; Prion Diseases - genetics ; Prion protein ; Prion Proteins - genetics ; Prions (Proteins) ; Proteins ; Research and Analysis Methods ; Sequences ; Stem cells ; Toxicity ; Transgenic animals ; Transgenic mice ; Up-Regulation</subject><ispartof>PloS one, 2016-04, Vol.11 (4), p.e0154604</ispartof><rights>COPYRIGHT 2016 Public Library of Science</rights><rights>2016 Kaczmarczyk et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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However, PrP is also hypothesized to be an important receptor for toxic protein conformers in Alzheimer's disease, and is associated with other clinically relevant processes such as cancer and stroke. Thus, key insights into important clinical areas, as well as into understanding PrP functions in normal physiology, can be obtained from studying transgenic mouse models and cell culture systems. However, the Prnp locus is difficult to manipulate by homologous recombination, making modifications of the endogenous locus rarely attempted. Fortunately in recent years genome engineering technologies, like TALENs or CRISPR/Cas9 (CC9), have brought exceptional new possibilities for manipulating Prnp. Herein, we present our observations made during systematic experiments with the CC9 system targeting the endogenous mouse Prnp locus, to either modify sequences or to boost PrP expression using CC9-based synergistic activation mediators (SAMs). It is our hope that this information will aid and encourage researchers to implement gene-targeting techniques into their research program.</description><subject>Alzheimer's disease</subject><subject>Amino acid sequence</subject><subject>Animal models</subject><subject>Animals</subject><subject>Biology and Life Sciences</subject><subject>Cancer</subject><subject>Care and treatment</subject><subject>Cell culture</subject><subject>Cell Line</subject><subject>CRISPR</subject><subject>CRISPR-Cas Systems</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Efficiency</subject><subject>Female</subject><subject>Gene Expression</subject><subject>Gene Knock-In Techniques - methods</subject><subject>Gene Targeting - methods</subject><subject>Genetic engineering</subject><subject>Genetic Vectors</subject><subject>Genome editing</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Homologous recombination</subject><subject>Homology</subject><subject>Humans</subject><subject>Loci</subject><subject>Male</subject><subject>Medicine and Health Sciences</subject><subject>Mice</subject><subject>Mice, Inbred C57BL</subject><subject>Mice, Knockout</subject><subject>Mutation</subject><subject>Neuroblastoma</subject><subject>Neurodegeneration</subject><subject>Neurodegenerative diseases</subject><subject>Neurological diseases</subject><subject>Physiology</subject><subject>Prion diseases</subject><subject>Prion Diseases - genetics</subject><subject>Prion protein</subject><subject>Prion Proteins - genetics</subject><subject>Prions (Proteins)</subject><subject>Proteins</subject><subject>Research and Analysis Methods</subject><subject>Sequences</subject><subject>Stem cells</subject><subject>Toxicity</subject><subject>Transgenic animals</subject><subject>Transgenic mice</subject><subject>Up-Regulation</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>D8T</sourceid><sourceid>DOA</sourceid><recordid>eNqNk11v2yAYha1p09p1-wfTZmnS1F0kBRswvpkUZV0XKVOrZOstIoATIgKewf3498ONW8VTLyZLGOHnnBeOeZPkPQRjmBfwbOvaxnIzrp1VYwAxIgC9SI5hmWcjkoH85cH8KHnj_RYAnFNCXidHWQEzihA8TpY_udV1a3jQdp2GjUqvGu1sHF1Q2qYXyqp0qf60ygqVcivT87u6Ud530FzdKOPTWx026XQxW14tzqbcl2-TVxU3Xr3r3yfJ7-_nv6Y_RvPLi9l0Mh-JguQhjgqirBCUClRhwimkCJaIEAlhSQXNcLkCAJUAFVUFIRYFzyVZCQ4IIlkl85Pk4963Ns6zPg_PYEExoiUu80jM9oR0fMvqRu94c88c1-xhwTVrxpughVGMSywlFpkoIUBcihWK5WWVcYkqkIuu2mjv5W9V3a4Gbt_09eTBzeiWwbg7UkT-a7-7drVTUigbGm4GsuEXqzds7W4YohgiCKLBaW_QuJi_D2ynvVDGcKtc252zRBgAQFFEP_2DPp9GT615PLC2lYt1RWfKJgjnKBoWNFLjZ6j4SLXTIl62Ssf1geDLQBCZoO7Cmrfes9ly8f_s5fWQ_XzAbhQ3YeOdaUO8en4Ioj0oGud9o6qnkCFgXa88psG6XmF9r0TZh8Mf9CR6bI78L_uyDWE</recordid><startdate>20160429</startdate><enddate>20160429</enddate><creator>Kaczmarczyk, Lech</creator><creator>Mende, Ylva</creator><creator>Zevnik, Branko</creator><creator>Jackson, Walker S</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>5PM</scope><scope>ABXSW</scope><scope>ADTPV</scope><scope>AOWAS</scope><scope>D8T</scope><scope>DG8</scope><scope>ZZAVC</scope><scope>DOA</scope></search><sort><creationdate>20160429</creationdate><title>Manipulating the Prion Protein Gene Sequence and Expression Levels with CRISPR/Cas9</title><author>Kaczmarczyk, Lech ; Mende, Ylva ; Zevnik, Branko ; Jackson, Walker S</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c763t-c7e1427c88c4f56a818419466d1198c8259b0049047ff115c7a3d6bca06462fd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Alzheimer's disease</topic><topic>Amino acid sequence</topic><topic>Animal models</topic><topic>Animals</topic><topic>Biology and Life Sciences</topic><topic>Cancer</topic><topic>Care and treatment</topic><topic>Cell culture</topic><topic>Cell Line</topic><topic>CRISPR</topic><topic>CRISPR-Cas Systems</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Efficiency</topic><topic>Female</topic><topic>Gene Expression</topic><topic>Gene Knock-In Techniques - methods</topic><topic>Gene Targeting - methods</topic><topic>Genetic engineering</topic><topic>Genetic Vectors</topic><topic>Genome editing</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Homologous recombination</topic><topic>Homology</topic><topic>Humans</topic><topic>Loci</topic><topic>Male</topic><topic>Medicine and Health Sciences</topic><topic>Mice</topic><topic>Mice, Inbred C57BL</topic><topic>Mice, Knockout</topic><topic>Mutation</topic><topic>Neuroblastoma</topic><topic>Neurodegeneration</topic><topic>Neurodegenerative diseases</topic><topic>Neurological diseases</topic><topic>Physiology</topic><topic>Prion diseases</topic><topic>Prion Diseases - genetics</topic><topic>Prion protein</topic><topic>Prion Proteins - genetics</topic><topic>Prions (Proteins)</topic><topic>Proteins</topic><topic>Research and Analysis Methods</topic><topic>Sequences</topic><topic>Stem cells</topic><topic>Toxicity</topic><topic>Transgenic animals</topic><topic>Transgenic mice</topic><topic>Up-Regulation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kaczmarczyk, Lech</creatorcontrib><creatorcontrib>Mende, Ylva</creatorcontrib><creatorcontrib>Zevnik, Branko</creatorcontrib><creatorcontrib>Jackson, Walker S</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Nursing & Allied Health Database</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Meteorological & Geoastrophysical Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Materials Science Database</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>Meteorological & Geoastrophysical Abstracts - 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However, PrP is also hypothesized to be an important receptor for toxic protein conformers in Alzheimer's disease, and is associated with other clinically relevant processes such as cancer and stroke. Thus, key insights into important clinical areas, as well as into understanding PrP functions in normal physiology, can be obtained from studying transgenic mouse models and cell culture systems. However, the Prnp locus is difficult to manipulate by homologous recombination, making modifications of the endogenous locus rarely attempted. Fortunately in recent years genome engineering technologies, like TALENs or CRISPR/Cas9 (CC9), have brought exceptional new possibilities for manipulating Prnp. Herein, we present our observations made during systematic experiments with the CC9 system targeting the endogenous mouse Prnp locus, to either modify sequences or to boost PrP expression using CC9-based synergistic activation mediators (SAMs). It is our hope that this information will aid and encourage researchers to implement gene-targeting techniques into their research program.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>27128441</pmid><doi>10.1371/journal.pone.0154604</doi><oa>free_for_read</oa></addata></record> |
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subjects | Alzheimer's disease Amino acid sequence Animal models Animals Biology and Life Sciences Cancer Care and treatment Cell culture Cell Line CRISPR CRISPR-Cas Systems Deoxyribonucleic acid DNA Efficiency Female Gene Expression Gene Knock-In Techniques - methods Gene Targeting - methods Genetic engineering Genetic Vectors Genome editing Genomes Genomics Homologous recombination Homology Humans Loci Male Medicine and Health Sciences Mice Mice, Inbred C57BL Mice, Knockout Mutation Neuroblastoma Neurodegeneration Neurodegenerative diseases Neurological diseases Physiology Prion diseases Prion Diseases - genetics Prion protein Prion Proteins - genetics Prions (Proteins) Proteins Research and Analysis Methods Sequences Stem cells Toxicity Transgenic animals Transgenic mice Up-Regulation |
title | Manipulating the Prion Protein Gene Sequence and Expression Levels with CRISPR/Cas9 |
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