Comprehensive Analysis of the COBRA-Like (COBL) Gene Family in Gossypium Identifies Two COBLs Potentially Associated with Fiber Quality

COBRA-Like (COBL) genes, which encode a plant-specific glycosylphosphatidylinositol (GPI) anchored protein, have been proven to be key regulators in the orientation of cell expansion and cellulose crystallinity status. Genome-wide analysis has been performed in A. thaliana, O. sativa, Z. mays and S....

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Veröffentlicht in:PloS one 2015-12, Vol.10 (12), p.e0145725-e0145725
Hauptverfasser: Niu, Erli, Shang, Xiaoguang, Cheng, Chaoze, Bao, Jianghao, Zeng, Yanda, Cai, Caiping, Du, Xiongming, Guo, Wangzhen
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container_title PloS one
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Shang, Xiaoguang
Cheng, Chaoze
Bao, Jianghao
Zeng, Yanda
Cai, Caiping
Du, Xiongming
Guo, Wangzhen
description COBRA-Like (COBL) genes, which encode a plant-specific glycosylphosphatidylinositol (GPI) anchored protein, have been proven to be key regulators in the orientation of cell expansion and cellulose crystallinity status. Genome-wide analysis has been performed in A. thaliana, O. sativa, Z. mays and S. lycopersicum, but little in Gossypium. Here we identified 19, 18 and 33 candidate COBL genes from three sequenced cotton species, diploid cotton G. raimondii, G. arboreum and tetraploid cotton G. hirsutum acc. TM-1, respectively. These COBL members were anchored onto 10 chromosomes in G. raimondii and could be divided into two subgroups. Expression patterns of COBL genes showed highly developmental and spatial regulation in G. hirsutum acc. TM-1. Of them, GhCOBL9 and GhCOBL13 were preferentially expressed at the secondary cell wall stage of fiber development and had significantly co-upregulated expression with cellulose synthase genes GhCESA4, GhCESA7 and GhCESA8. Besides, GhCOBL9 Dt and GhCOBL13 Dt were co-localized with previously reported cotton fiber quality quantitative trait loci (QTLs) and the favorable allele types of GhCOBL9 Dt had significantly positive correlations with fiber quality traits, indicating that these two genes might play an important role in fiber development.
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Genome-wide analysis has been performed in A. thaliana, O. sativa, Z. mays and S. lycopersicum, but little in Gossypium. Here we identified 19, 18 and 33 candidate COBL genes from three sequenced cotton species, diploid cotton G. raimondii, G. arboreum and tetraploid cotton G. hirsutum acc. TM-1, respectively. These COBL members were anchored onto 10 chromosomes in G. raimondii and could be divided into two subgroups. Expression patterns of COBL genes showed highly developmental and spatial regulation in G. hirsutum acc. TM-1. Of them, GhCOBL9 and GhCOBL13 were preferentially expressed at the secondary cell wall stage of fiber development and had significantly co-upregulated expression with cellulose synthase genes GhCESA4, GhCESA7 and GhCESA8. 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Genome-wide analysis has been performed in A. thaliana, O. sativa, Z. mays and S. lycopersicum, but little in Gossypium. Here we identified 19, 18 and 33 candidate COBL genes from three sequenced cotton species, diploid cotton G. raimondii, G. arboreum and tetraploid cotton G. hirsutum acc. TM-1, respectively. These COBL members were anchored onto 10 chromosomes in G. raimondii and could be divided into two subgroups. Expression patterns of COBL genes showed highly developmental and spatial regulation in G. hirsutum acc. TM-1. Of them, GhCOBL9 and GhCOBL13 were preferentially expressed at the secondary cell wall stage of fiber development and had significantly co-upregulated expression with cellulose synthase genes GhCESA4, GhCESA7 and GhCESA8. Besides, GhCOBL9 Dt and GhCOBL13 Dt were co-localized with previously reported cotton fiber quality quantitative trait loci (QTLs) and the favorable allele types of GhCOBL9 Dt had significantly positive correlations with fiber quality traits, indicating that these two genes might play an important role in fiber development.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>26710066</pmid><doi>10.1371/journal.pone.0145725</doi><oa>free_for_read</oa></addata></record>
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subjects Agricultural production
Amino Acid Sequence
Arabidopsis
Biosynthesis
Cell walls
Cellulose
Cellulose fibers
Cellulose synthase
Chromosome Mapping
Chromosomes
Conserved Sequence
Cotton
Cotton (Plant)
Cotton Fiber
Developmental stages
Diploidy
Education
Engineering research
Evolution & development
Gene Duplication
Gene expression
Gene Expression Regulation, Developmental
Gene Expression Regulation, Plant
Genes
Genes, Plant
Genetic aspects
Genetics
Genomes
Genomics
Genotype & phenotype
Germplasm
Glycosylphosphatidylinositol
Gossypium
Gossypium - genetics
Gossypium - growth & development
Gossypium - metabolism
Gossypium hirsutum
Laboratories
Mitochondrial DNA
Molecular Sequence Data
Multigene Family
Oryza sativa
Phylogeny
Physiological aspects
Plant development
Plant Proteins - genetics
Polymorphism, Single Nucleotide
Proteins
Quality
Quantitative genetics
Quantitative Trait Loci
Regulators
Sequence Homology, Amino Acid
Species Specificity
Subgroups
Tetraploidy
title Comprehensive Analysis of the COBRA-Like (COBL) Gene Family in Gossypium Identifies Two COBLs Potentially Associated with Fiber Quality
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