Transcriptome Analysis of Plant Hormone-Related Tomato (Solanum lycopersicum) Genes in a Sunlight-Type Plant Factory
In plant factories, measurements of plant conditions are necessary at an early stage of growth to predict harvest times of high value-added crops. Moreover, harvest qualities depend largely on environmental stresses that elicit plant hormone responses. However, the complexities of plant hormone netw...
Gespeichert in:
| Veröffentlicht in: | PloS one 2015-12, Vol.10 (12), p.e0143412-e0143412 |
|---|---|
| Hauptverfasser: | , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | e0143412 |
|---|---|
| container_issue | 12 |
| container_start_page | e0143412 |
| container_title | PloS one |
| container_volume | 10 |
| creator | Tanigaki, Yusuke Higashi, Takanobu Takayama, Kotaro Nagano, Atsushi J Honjo, Mie N Fukuda, Hirokazu |
| description | In plant factories, measurements of plant conditions are necessary at an early stage of growth to predict harvest times of high value-added crops. Moreover, harvest qualities depend largely on environmental stresses that elicit plant hormone responses. However, the complexities of plant hormone networks have not been characterized under nonstress conditions. In the present study, we determined temporal expression profiles of all genes and then focused on plant hormone pathways using RNA-Seq analyses of gene expression in tomato leaves every 2 h for 48 h. In these experiments, temporally expressed genes were found in the hormone synthesis pathways for salicylic acid, abscisic acid, ethylene, and jasmonic acid. The timing of CAB expression 1 (TOC1) and abscisic acid insensitive 1 (ABA1) and open stomata 1 (OST1) control gating stomata. In this study, compare with tomato and Arabidopsis thaliana, expression patterns of TOC1 have similarity. In contrast, expression patterns of tomato ABI1 and OST1 had expression peak at different time. These findings suggest that the regulation of gating stomata does not depend predominantly on TOC1 and significantly reflects the extracellular environment. The present data provide new insights into relationships between temporally expressed plant hormone-related genes and clock genes under normal sunlight conditions. |
| doi_str_mv | 10.1371/journal.pone.0143412 |
| format | Article |
| fullrecord | <record><control><sourceid>gale_plos_</sourceid><recordid>TN_cdi_plos_journals_1738477698</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A436776245</galeid><doaj_id>oai_doaj_org_article_b07bef09555e41b69b81188256dac56b</doaj_id><sourcerecordid>A436776245</sourcerecordid><originalsourceid>FETCH-LOGICAL-c802t-9e613af41c8272bfd02c4fc974c2af743e7e6489b7a11ef1707d22103f7e31023</originalsourceid><addsrcrecordid>eNqNk99r2zAQx83YWLtu_8HYDIPRPiTTL0v2yyCUtQ0UOppsr0KWz4mCbbmSPJb_fsrilmT0YdKDxN3nvqc7cUnyHqMppgJ_2djBdaqZ9raDKcKMMkxeJKe4oGTCCaIvD-4nyRvvNwhlNOf8dXJCOCcMIXaahKVTndfO9MG2kM6i4tYbn9o6_d6oLqQ31rUxw-QeGhWgSpe2VcGm5wsb3UObNltte3De6KG9SK-hA5-aLlXpYugas1qHyXLbwyh2pXSwbvs2eVWrxsO78TxLflx9W17eTG7vrueXs9uJzhEJkwI4pqpmWOdEkLKuENGs1oVgmqhaMAoCOMuLUiiMocYCiYoQjGgtgGJE6Fnyca_bN9bLsWFeYkFzJgQv8kjM90Rl1Ub2zrTKbaVVRv41WLeSygWjG5AlEiXUqMiyDBgueVHmGOc5yXildMbLqPV1zDaULVQauuBUcyR67OnMWq7sL8l4XAJFgfNRwNmHAXyQrfEamtg6sMP-3TkhGeYR_fQP-nx1I7VSsQDT1Tbm1TtROWOUR4iwLFLTZ6i4K2iNjn9fm2g_Crg4CohMgN9hpQbv5Xxx___s3c9j9vMBuwbVhLW3zRCM7fwxyPagdtZ7B_VTkzGSu-F47IbcDYcchyOGfTj8oKegx2mgfwBPrwlt</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1738477698</pqid></control><display><type>article</type><title>Transcriptome Analysis of Plant Hormone-Related Tomato (Solanum lycopersicum) Genes in a Sunlight-Type Plant Factory</title><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>Public Library of Science (PLoS)</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><creator>Tanigaki, Yusuke ; Higashi, Takanobu ; Takayama, Kotaro ; Nagano, Atsushi J ; Honjo, Mie N ; Fukuda, Hirokazu</creator><contributor>Zhang, Jin-Song</contributor><creatorcontrib>Tanigaki, Yusuke ; Higashi, Takanobu ; Takayama, Kotaro ; Nagano, Atsushi J ; Honjo, Mie N ; Fukuda, Hirokazu ; Zhang, Jin-Song</creatorcontrib><description>In plant factories, measurements of plant conditions are necessary at an early stage of growth to predict harvest times of high value-added crops. Moreover, harvest qualities depend largely on environmental stresses that elicit plant hormone responses. However, the complexities of plant hormone networks have not been characterized under nonstress conditions. In the present study, we determined temporal expression profiles of all genes and then focused on plant hormone pathways using RNA-Seq analyses of gene expression in tomato leaves every 2 h for 48 h. In these experiments, temporally expressed genes were found in the hormone synthesis pathways for salicylic acid, abscisic acid, ethylene, and jasmonic acid. The timing of CAB expression 1 (TOC1) and abscisic acid insensitive 1 (ABA1) and open stomata 1 (OST1) control gating stomata. In this study, compare with tomato and Arabidopsis thaliana, expression patterns of TOC1 have similarity. In contrast, expression patterns of tomato ABI1 and OST1 had expression peak at different time. These findings suggest that the regulation of gating stomata does not depend predominantly on TOC1 and significantly reflects the extracellular environment. The present data provide new insights into relationships between temporally expressed plant hormone-related genes and clock genes under normal sunlight conditions.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0143412</identifier><identifier>PMID: 26624004</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Abscisic acid ; Acids ; Arabidopsis ; Arabidopsis - genetics ; Circadian rhythm ; Circadian Rhythm - genetics ; Circadian Rhythm - radiation effects ; Crop diseases ; Engineering schools ; Environmental stress ; Factories ; Flowers & plants ; Gating ; Gene expression ; Gene Expression Profiling ; Genes ; Genes, Plant - genetics ; Genetic aspects ; Harvesting ; Hormones ; Industrial plants ; Jasmonic acid ; Leaves ; Lycopersicon esculentum - genetics ; Lycopersicon esculentum - metabolism ; Lycopersicon esculentum - physiology ; Lycopersicon esculentum - radiation effects ; Mechanical engineering ; Pathways ; Physiological aspects ; Phytohormones ; Plant Growth Regulators - metabolism ; Plant hormones ; Ribonucleic acid ; RNA ; Salicylic acid ; Signal transduction ; Solanum lycopersicum ; Stomata ; Studies ; Sunlight ; Tomatoes</subject><ispartof>PloS one, 2015-12, Vol.10 (12), p.e0143412-e0143412</ispartof><rights>COPYRIGHT 2015 Public Library of Science</rights><rights>2015 Tanigaki et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2015 Tanigaki et al 2015 Tanigaki et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c802t-9e613af41c8272bfd02c4fc974c2af743e7e6489b7a11ef1707d22103f7e31023</citedby><cites>FETCH-LOGICAL-c802t-9e613af41c8272bfd02c4fc974c2af743e7e6489b7a11ef1707d22103f7e31023</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4666670/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4666670/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2101,2927,23865,27923,27924,53790,53792,79471,79472</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26624004$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Zhang, Jin-Song</contributor><creatorcontrib>Tanigaki, Yusuke</creatorcontrib><creatorcontrib>Higashi, Takanobu</creatorcontrib><creatorcontrib>Takayama, Kotaro</creatorcontrib><creatorcontrib>Nagano, Atsushi J</creatorcontrib><creatorcontrib>Honjo, Mie N</creatorcontrib><creatorcontrib>Fukuda, Hirokazu</creatorcontrib><title>Transcriptome Analysis of Plant Hormone-Related Tomato (Solanum lycopersicum) Genes in a Sunlight-Type Plant Factory</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>In plant factories, measurements of plant conditions are necessary at an early stage of growth to predict harvest times of high value-added crops. Moreover, harvest qualities depend largely on environmental stresses that elicit plant hormone responses. However, the complexities of plant hormone networks have not been characterized under nonstress conditions. In the present study, we determined temporal expression profiles of all genes and then focused on plant hormone pathways using RNA-Seq analyses of gene expression in tomato leaves every 2 h for 48 h. In these experiments, temporally expressed genes were found in the hormone synthesis pathways for salicylic acid, abscisic acid, ethylene, and jasmonic acid. The timing of CAB expression 1 (TOC1) and abscisic acid insensitive 1 (ABA1) and open stomata 1 (OST1) control gating stomata. In this study, compare with tomato and Arabidopsis thaliana, expression patterns of TOC1 have similarity. In contrast, expression patterns of tomato ABI1 and OST1 had expression peak at different time. These findings suggest that the regulation of gating stomata does not depend predominantly on TOC1 and significantly reflects the extracellular environment. The present data provide new insights into relationships between temporally expressed plant hormone-related genes and clock genes under normal sunlight conditions.</description><subject>Abscisic acid</subject><subject>Acids</subject><subject>Arabidopsis</subject><subject>Arabidopsis - genetics</subject><subject>Circadian rhythm</subject><subject>Circadian Rhythm - genetics</subject><subject>Circadian Rhythm - radiation effects</subject><subject>Crop diseases</subject><subject>Engineering schools</subject><subject>Environmental stress</subject><subject>Factories</subject><subject>Flowers & plants</subject><subject>Gating</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Genes</subject><subject>Genes, Plant - genetics</subject><subject>Genetic aspects</subject><subject>Harvesting</subject><subject>Hormones</subject><subject>Industrial plants</subject><subject>Jasmonic acid</subject><subject>Leaves</subject><subject>Lycopersicon esculentum - genetics</subject><subject>Lycopersicon esculentum - metabolism</subject><subject>Lycopersicon esculentum - physiology</subject><subject>Lycopersicon esculentum - radiation effects</subject><subject>Mechanical engineering</subject><subject>Pathways</subject><subject>Physiological aspects</subject><subject>Phytohormones</subject><subject>Plant Growth Regulators - metabolism</subject><subject>Plant hormones</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Salicylic acid</subject><subject>Signal transduction</subject><subject>Solanum lycopersicum</subject><subject>Stomata</subject><subject>Studies</subject><subject>Sunlight</subject><subject>Tomatoes</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>DOA</sourceid><recordid>eNqNk99r2zAQx83YWLtu_8HYDIPRPiTTL0v2yyCUtQ0UOppsr0KWz4mCbbmSPJb_fsrilmT0YdKDxN3nvqc7cUnyHqMppgJ_2djBdaqZ9raDKcKMMkxeJKe4oGTCCaIvD-4nyRvvNwhlNOf8dXJCOCcMIXaahKVTndfO9MG2kM6i4tYbn9o6_d6oLqQ31rUxw-QeGhWgSpe2VcGm5wsb3UObNltte3De6KG9SK-hA5-aLlXpYugas1qHyXLbwyh2pXSwbvs2eVWrxsO78TxLflx9W17eTG7vrueXs9uJzhEJkwI4pqpmWOdEkLKuENGs1oVgmqhaMAoCOMuLUiiMocYCiYoQjGgtgGJE6Fnyca_bN9bLsWFeYkFzJgQv8kjM90Rl1Ub2zrTKbaVVRv41WLeSygWjG5AlEiXUqMiyDBgueVHmGOc5yXildMbLqPV1zDaULVQauuBUcyR67OnMWq7sL8l4XAJFgfNRwNmHAXyQrfEamtg6sMP-3TkhGeYR_fQP-nx1I7VSsQDT1Tbm1TtROWOUR4iwLFLTZ6i4K2iNjn9fm2g_Crg4CohMgN9hpQbv5Xxx___s3c9j9vMBuwbVhLW3zRCM7fwxyPagdtZ7B_VTkzGSu-F47IbcDYcchyOGfTj8oKegx2mgfwBPrwlt</recordid><startdate>20151201</startdate><enddate>20151201</enddate><creator>Tanigaki, Yusuke</creator><creator>Higashi, Takanobu</creator><creator>Takayama, Kotaro</creator><creator>Nagano, Atsushi J</creator><creator>Honjo, Mie N</creator><creator>Fukuda, Hirokazu</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20151201</creationdate><title>Transcriptome Analysis of Plant Hormone-Related Tomato (Solanum lycopersicum) Genes in a Sunlight-Type Plant Factory</title><author>Tanigaki, Yusuke ; Higashi, Takanobu ; Takayama, Kotaro ; Nagano, Atsushi J ; Honjo, Mie N ; Fukuda, Hirokazu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c802t-9e613af41c8272bfd02c4fc974c2af743e7e6489b7a11ef1707d22103f7e31023</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Abscisic acid</topic><topic>Acids</topic><topic>Arabidopsis</topic><topic>Arabidopsis - genetics</topic><topic>Circadian rhythm</topic><topic>Circadian Rhythm - genetics</topic><topic>Circadian Rhythm - radiation effects</topic><topic>Crop diseases</topic><topic>Engineering schools</topic><topic>Environmental stress</topic><topic>Factories</topic><topic>Flowers & plants</topic><topic>Gating</topic><topic>Gene expression</topic><topic>Gene Expression Profiling</topic><topic>Genes</topic><topic>Genes, Plant - genetics</topic><topic>Genetic aspects</topic><topic>Harvesting</topic><topic>Hormones</topic><topic>Industrial plants</topic><topic>Jasmonic acid</topic><topic>Leaves</topic><topic>Lycopersicon esculentum - genetics</topic><topic>Lycopersicon esculentum - metabolism</topic><topic>Lycopersicon esculentum - physiology</topic><topic>Lycopersicon esculentum - radiation effects</topic><topic>Mechanical engineering</topic><topic>Pathways</topic><topic>Physiological aspects</topic><topic>Phytohormones</topic><topic>Plant Growth Regulators - metabolism</topic><topic>Plant hormones</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>Salicylic acid</topic><topic>Signal transduction</topic><topic>Solanum lycopersicum</topic><topic>Stomata</topic><topic>Studies</topic><topic>Sunlight</topic><topic>Tomatoes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tanigaki, Yusuke</creatorcontrib><creatorcontrib>Higashi, Takanobu</creatorcontrib><creatorcontrib>Takayama, Kotaro</creatorcontrib><creatorcontrib>Nagano, Atsushi J</creatorcontrib><creatorcontrib>Honjo, Mie N</creatorcontrib><creatorcontrib>Fukuda, Hirokazu</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Nursing & Allied Health Database</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Meteorological & Geoastrophysical Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection (ProQuest)</collection><collection>Natural Science Collection (ProQuest)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Materials Science Database</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>Meteorological & Geoastrophysical Abstracts - Academic</collection><collection>ProQuest Engineering Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Nursing & Allied Health Premium</collection><collection>Advanced Technologies & Aerospace Database</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Materials Science Collection</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tanigaki, Yusuke</au><au>Higashi, Takanobu</au><au>Takayama, Kotaro</au><au>Nagano, Atsushi J</au><au>Honjo, Mie N</au><au>Fukuda, Hirokazu</au><au>Zhang, Jin-Song</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Transcriptome Analysis of Plant Hormone-Related Tomato (Solanum lycopersicum) Genes in a Sunlight-Type Plant Factory</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2015-12-01</date><risdate>2015</risdate><volume>10</volume><issue>12</issue><spage>e0143412</spage><epage>e0143412</epage><pages>e0143412-e0143412</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>In plant factories, measurements of plant conditions are necessary at an early stage of growth to predict harvest times of high value-added crops. Moreover, harvest qualities depend largely on environmental stresses that elicit plant hormone responses. However, the complexities of plant hormone networks have not been characterized under nonstress conditions. In the present study, we determined temporal expression profiles of all genes and then focused on plant hormone pathways using RNA-Seq analyses of gene expression in tomato leaves every 2 h for 48 h. In these experiments, temporally expressed genes were found in the hormone synthesis pathways for salicylic acid, abscisic acid, ethylene, and jasmonic acid. The timing of CAB expression 1 (TOC1) and abscisic acid insensitive 1 (ABA1) and open stomata 1 (OST1) control gating stomata. In this study, compare with tomato and Arabidopsis thaliana, expression patterns of TOC1 have similarity. In contrast, expression patterns of tomato ABI1 and OST1 had expression peak at different time. These findings suggest that the regulation of gating stomata does not depend predominantly on TOC1 and significantly reflects the extracellular environment. The present data provide new insights into relationships between temporally expressed plant hormone-related genes and clock genes under normal sunlight conditions.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>26624004</pmid><doi>10.1371/journal.pone.0143412</doi><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1932-6203 |
| ispartof | PloS one, 2015-12, Vol.10 (12), p.e0143412-e0143412 |
| issn | 1932-6203 1932-6203 |
| language | eng |
| recordid | cdi_plos_journals_1738477698 |
| source | MEDLINE; DOAJ Directory of Open Access Journals; Public Library of Science (PLoS); EZB-FREE-00999 freely available EZB journals; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Abscisic acid Acids Arabidopsis Arabidopsis - genetics Circadian rhythm Circadian Rhythm - genetics Circadian Rhythm - radiation effects Crop diseases Engineering schools Environmental stress Factories Flowers & plants Gating Gene expression Gene Expression Profiling Genes Genes, Plant - genetics Genetic aspects Harvesting Hormones Industrial plants Jasmonic acid Leaves Lycopersicon esculentum - genetics Lycopersicon esculentum - metabolism Lycopersicon esculentum - physiology Lycopersicon esculentum - radiation effects Mechanical engineering Pathways Physiological aspects Phytohormones Plant Growth Regulators - metabolism Plant hormones Ribonucleic acid RNA Salicylic acid Signal transduction Solanum lycopersicum Stomata Studies Sunlight Tomatoes |
| title | Transcriptome Analysis of Plant Hormone-Related Tomato (Solanum lycopersicum) Genes in a Sunlight-Type Plant Factory |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-09T05%3A08%3A05IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Transcriptome%20Analysis%20of%20Plant%20Hormone-Related%20Tomato%20(Solanum%20lycopersicum)%20Genes%20in%20a%20Sunlight-Type%20Plant%20Factory&rft.jtitle=PloS%20one&rft.au=Tanigaki,%20Yusuke&rft.date=2015-12-01&rft.volume=10&rft.issue=12&rft.spage=e0143412&rft.epage=e0143412&rft.pages=e0143412-e0143412&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0143412&rft_dat=%3Cgale_plos_%3EA436776245%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1738477698&rft_id=info:pmid/26624004&rft_galeid=A436776245&rft_doaj_id=oai_doaj_org_article_b07bef09555e41b69b81188256dac56b&rfr_iscdi=true |