Identification of Two Novel HOXB13 Germline Mutations in Portuguese Prostate Cancer Patients
The HOXB13 germline variant G84E (rs138213197) was recently described in men of European descent, with the highest prevalence in Northern Europe. The G84E mutation has not been found in patients of African or Asian ancestry, which may carry other HOXB13 variants, indicating allelic heterogeneity dep...
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description | The HOXB13 germline variant G84E (rs138213197) was recently described in men of European descent, with the highest prevalence in Northern Europe. The G84E mutation has not been found in patients of African or Asian ancestry, which may carry other HOXB13 variants, indicating allelic heterogeneity depending on the population. In order to gain insight into the full scope of coding HOXB13 mutations in Portuguese prostate cancer patients, we decided to sequence the entire coding region of the HOXB13 gene in 462 early-onset or familial/hereditary cases. Additionally, we searched for somatic HOXB13 mutations in 178 prostate carcinomas to evaluate their prevalence in prostate carcinogenesis. Three different patients were found to carry in their germline DNA two novel missense variants, which were not identified in 132 control subjects. Both variants are predicted to be deleterious by different in silico tools. No somatic mutations were found. These findings further support the hypothesis that different rare HOXB13 mutations may be found in different ethnic groups. Detection of mutations predisposing to prostate cancer may require re-sequencing rather than genotyping, as appropriate to the population under investigation. |
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The G84E mutation has not been found in patients of African or Asian ancestry, which may carry other HOXB13 variants, indicating allelic heterogeneity depending on the population. In order to gain insight into the full scope of coding HOXB13 mutations in Portuguese prostate cancer patients, we decided to sequence the entire coding region of the HOXB13 gene in 462 early-onset or familial/hereditary cases. Additionally, we searched for somatic HOXB13 mutations in 178 prostate carcinomas to evaluate their prevalence in prostate carcinogenesis. Three different patients were found to carry in their germline DNA two novel missense variants, which were not identified in 132 control subjects. Both variants are predicted to be deleterious by different in silico tools. No somatic mutations were found. These findings further support the hypothesis that different rare HOXB13 mutations may be found in different ethnic groups. Detection of mutations predisposing to prostate cancer may require re-sequencing rather than genotyping, as appropriate to the population under investigation.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0132728</identifier><identifier>PMID: 26176944</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Adenocarcinoma - epidemiology ; Adenocarcinoma - genetics ; Adult ; Age ; Aged ; Amino Acid Sequence ; Androgens ; Base Sequence ; Cancer ; Cancer patients ; Carcinogenesis ; Carcinogens ; Care and treatment ; Case-Control Studies ; Deoxyribonucleic acid ; DNA ; DNA Mutational Analysis ; Epigenetics ; Ethnic factors ; Gene Frequency ; Gene mutation ; Genetic aspects ; Genetic Predisposition to Disease ; Genotype ; Genotyping ; Germ-Line Mutation ; Health risk assessment ; Homeodomain Proteins - genetics ; Hoxb13 gene ; Humans ; Male ; Medical diagnosis ; Middle Aged ; Minority & ethnic groups ; Molecular Sequence Data ; Mutation ; Patients ; Pedigree ; Portugal ; Predictive control ; Prevalence ; Prostate cancer ; Prostate carcinoma ; Prostatic Neoplasms - epidemiology ; Prostatic Neoplasms - genetics ; Risk Factors</subject><ispartof>PloS one, 2015-07, Vol.10 (7), p.e0132728</ispartof><rights>COPYRIGHT 2015 Public Library of Science</rights><rights>2015 Maia et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2015 Maia et al 2015 Maia et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c758t-85734a22956123ba37587f22e5e0b34ce61a47caf4585a178c0bc4cbaa49ef0d3</citedby><cites>FETCH-LOGICAL-c758t-85734a22956123ba37587f22e5e0b34ce61a47caf4585a178c0bc4cbaa49ef0d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4503425/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4503425/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79342,79343</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26176944$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Maia, Sofia</creatorcontrib><creatorcontrib>Cardoso, Marta</creatorcontrib><creatorcontrib>Pinto, Pedro</creatorcontrib><creatorcontrib>Pinheiro, Manuela</creatorcontrib><creatorcontrib>Santos, Catarina</creatorcontrib><creatorcontrib>Peixoto, Ana</creatorcontrib><creatorcontrib>Bento, Maria José</creatorcontrib><creatorcontrib>Oliveira, Jorge</creatorcontrib><creatorcontrib>Henrique, Rui</creatorcontrib><creatorcontrib>Jerónimo, Carmen</creatorcontrib><creatorcontrib>Teixeira, Manuel R</creatorcontrib><title>Identification of Two Novel HOXB13 Germline Mutations in Portuguese Prostate Cancer Patients</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>The HOXB13 germline variant G84E (rs138213197) was recently described in men of European descent, with the highest prevalence in Northern Europe. The G84E mutation has not been found in patients of African or Asian ancestry, which may carry other HOXB13 variants, indicating allelic heterogeneity depending on the population. In order to gain insight into the full scope of coding HOXB13 mutations in Portuguese prostate cancer patients, we decided to sequence the entire coding region of the HOXB13 gene in 462 early-onset or familial/hereditary cases. Additionally, we searched for somatic HOXB13 mutations in 178 prostate carcinomas to evaluate their prevalence in prostate carcinogenesis. Three different patients were found to carry in their germline DNA two novel missense variants, which were not identified in 132 control subjects. Both variants are predicted to be deleterious by different in silico tools. No somatic mutations were found. These findings further support the hypothesis that different rare HOXB13 mutations may be found in different ethnic groups. Detection of mutations predisposing to prostate cancer may require re-sequencing rather than genotyping, as appropriate to the population under investigation.</description><subject>Adenocarcinoma - epidemiology</subject><subject>Adenocarcinoma - genetics</subject><subject>Adult</subject><subject>Age</subject><subject>Aged</subject><subject>Amino Acid Sequence</subject><subject>Androgens</subject><subject>Base Sequence</subject><subject>Cancer</subject><subject>Cancer patients</subject><subject>Carcinogenesis</subject><subject>Carcinogens</subject><subject>Care and treatment</subject><subject>Case-Control Studies</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA Mutational Analysis</subject><subject>Epigenetics</subject><subject>Ethnic factors</subject><subject>Gene Frequency</subject><subject>Gene mutation</subject><subject>Genetic aspects</subject><subject>Genetic Predisposition to Disease</subject><subject>Genotype</subject><subject>Genotyping</subject><subject>Germ-Line Mutation</subject><subject>Health risk assessment</subject><subject>Homeodomain Proteins - 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The G84E mutation has not been found in patients of African or Asian ancestry, which may carry other HOXB13 variants, indicating allelic heterogeneity depending on the population. In order to gain insight into the full scope of coding HOXB13 mutations in Portuguese prostate cancer patients, we decided to sequence the entire coding region of the HOXB13 gene in 462 early-onset or familial/hereditary cases. Additionally, we searched for somatic HOXB13 mutations in 178 prostate carcinomas to evaluate their prevalence in prostate carcinogenesis. Three different patients were found to carry in their germline DNA two novel missense variants, which were not identified in 132 control subjects. Both variants are predicted to be deleterious by different in silico tools. No somatic mutations were found. These findings further support the hypothesis that different rare HOXB13 mutations may be found in different ethnic groups. Detection of mutations predisposing to prostate cancer may require re-sequencing rather than genotyping, as appropriate to the population under investigation.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>26176944</pmid><doi>10.1371/journal.pone.0132728</doi><oa>free_for_read</oa></addata></record> |
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subjects | Adenocarcinoma - epidemiology Adenocarcinoma - genetics Adult Age Aged Amino Acid Sequence Androgens Base Sequence Cancer Cancer patients Carcinogenesis Carcinogens Care and treatment Case-Control Studies Deoxyribonucleic acid DNA DNA Mutational Analysis Epigenetics Ethnic factors Gene Frequency Gene mutation Genetic aspects Genetic Predisposition to Disease Genotype Genotyping Germ-Line Mutation Health risk assessment Homeodomain Proteins - genetics Hoxb13 gene Humans Male Medical diagnosis Middle Aged Minority & ethnic groups Molecular Sequence Data Mutation Patients Pedigree Portugal Predictive control Prevalence Prostate cancer Prostate carcinoma Prostatic Neoplasms - epidemiology Prostatic Neoplasms - genetics Risk Factors |
title | Identification of Two Novel HOXB13 Germline Mutations in Portuguese Prostate Cancer Patients |
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