Genome-Wide Association Analyses Point to Candidate Genes for Electric Shock Avoidance in Drosophila melanogaster
Electric shock is a common stimulus for nociception-research and the most widely used reinforcement in aversive associative learning experiments. Yet, nothing is known about the mechanisms it recruits at the periphery. To help fill this gap, we undertook a genome-wide association analysis using 38 i...
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creator | Appel, Mirjam Scholz, Claus-Jürgen Müller, Tobias Dittrich, Marcus König, Christian Bockstaller, Marie Oguz, Tuba Khalili, Afshin Antwi-Adjei, Emmanuel Schauer, Tamas Margulies, Carla Tanimoto, Hiromu Yarali, Ayse |
description | Electric shock is a common stimulus for nociception-research and the most widely used reinforcement in aversive associative learning experiments. Yet, nothing is known about the mechanisms it recruits at the periphery. To help fill this gap, we undertook a genome-wide association analysis using 38 inbred Drosophila melanogaster strains, which avoided shock to varying extents. We identified 514 genes whose expression levels and/ or sequences co-varied with shock avoidance scores. We independently scrutinized 14 of these genes using mutants, validating the effect of 7 of them on shock avoidance. This emphasizes the value of our candidate gene list as a guide for follow-up research. In addition, by integrating our association results with external protein-protein interaction data we obtained a shock avoidance-associated network of 38 genes. Both this network and the original candidate list contained a substantial number of genes that affect mechanosensory bristles, which are hair-like organs distributed across the fly's body. These results may point to a potential role for mechanosensory bristles in shock sensation. Thus, we not only provide a first list of candidate genes for shock avoidance, but also point to an interesting new hypothesis on nociceptive mechanisms. |
doi_str_mv | 10.1371/journal.pone.0126986 |
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C.</contributor><creatorcontrib>Appel, Mirjam ; Scholz, Claus-Jürgen ; Müller, Tobias ; Dittrich, Marcus ; König, Christian ; Bockstaller, Marie ; Oguz, Tuba ; Khalili, Afshin ; Antwi-Adjei, Emmanuel ; Schauer, Tamas ; Margulies, Carla ; Tanimoto, Hiromu ; Yarali, Ayse ; Skoulakis, Efthimios M. C.</creatorcontrib><description>Electric shock is a common stimulus for nociception-research and the most widely used reinforcement in aversive associative learning experiments. Yet, nothing is known about the mechanisms it recruits at the periphery. To help fill this gap, we undertook a genome-wide association analysis using 38 inbred Drosophila melanogaster strains, which avoided shock to varying extents. We identified 514 genes whose expression levels and/ or sequences co-varied with shock avoidance scores. We independently scrutinized 14 of these genes using mutants, validating the effect of 7 of them on shock avoidance. This emphasizes the value of our candidate gene list as a guide for follow-up research. In addition, by integrating our association results with external protein-protein interaction data we obtained a shock avoidance-associated network of 38 genes. Both this network and the original candidate list contained a substantial number of genes that affect mechanosensory bristles, which are hair-like organs distributed across the fly's body. These results may point to a potential role for mechanosensory bristles in shock sensation. Thus, we not only provide a first list of candidate genes for shock avoidance, but also point to an interesting new hypothesis on nociceptive mechanisms.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0126986</identifier><identifier>PMID: 25992709</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Animals ; Association analysis ; Associative learning ; Avoidance ; Avoidance Learning ; Bioinformatics ; Biology ; Bristles ; DNA Transposable Elements ; Drosophila ; Drosophila melanogaster ; Drosophila melanogaster - physiology ; Electric shock injuries ; Electroshock ; Gene Deletion ; Gene expression ; Gene Expression Profiling ; Gene Regulatory Networks ; Gene sequencing ; Genes ; Genetic aspects ; Genetic Association Studies ; Genetics ; Genome-Wide Association Study ; Genomes ; Inbreeding ; Insects ; Locomotion ; Mutagenesis, Insertional ; Mutants ; Neurobiology ; Neurosciences ; Nociception ; Organs ; Pain perception ; Physiological aspects ; Physiology ; Protein interaction ; Proteins ; Reproducibility of Results ; Shock</subject><ispartof>PloS one, 2015-05, Vol.10 (5), p.e0126986</ispartof><rights>COPYRIGHT 2015 Public Library of Science</rights><rights>2015 Appel et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2015 Appel et al 2015 Appel et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c659t-d4dbe722679a851992fa6a02bc648c07cc651ffcb815f6b9db88f74b149c22813</citedby><cites>FETCH-LOGICAL-c659t-d4dbe722679a851992fa6a02bc648c07cc651ffcb815f6b9db88f74b149c22813</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4436303/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4436303/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2095,2914,23846,27903,27904,53769,53771,79346,79347</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25992709$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Skoulakis, Efthimios M. C.</contributor><creatorcontrib>Appel, Mirjam</creatorcontrib><creatorcontrib>Scholz, Claus-Jürgen</creatorcontrib><creatorcontrib>Müller, Tobias</creatorcontrib><creatorcontrib>Dittrich, Marcus</creatorcontrib><creatorcontrib>König, Christian</creatorcontrib><creatorcontrib>Bockstaller, Marie</creatorcontrib><creatorcontrib>Oguz, Tuba</creatorcontrib><creatorcontrib>Khalili, Afshin</creatorcontrib><creatorcontrib>Antwi-Adjei, Emmanuel</creatorcontrib><creatorcontrib>Schauer, Tamas</creatorcontrib><creatorcontrib>Margulies, Carla</creatorcontrib><creatorcontrib>Tanimoto, Hiromu</creatorcontrib><creatorcontrib>Yarali, Ayse</creatorcontrib><title>Genome-Wide Association Analyses Point to Candidate Genes for Electric Shock Avoidance in Drosophila melanogaster</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Electric shock is a common stimulus for nociception-research and the most widely used reinforcement in aversive associative learning experiments. Yet, nothing is known about the mechanisms it recruits at the periphery. To help fill this gap, we undertook a genome-wide association analysis using 38 inbred Drosophila melanogaster strains, which avoided shock to varying extents. We identified 514 genes whose expression levels and/ or sequences co-varied with shock avoidance scores. We independently scrutinized 14 of these genes using mutants, validating the effect of 7 of them on shock avoidance. This emphasizes the value of our candidate gene list as a guide for follow-up research. In addition, by integrating our association results with external protein-protein interaction data we obtained a shock avoidance-associated network of 38 genes. Both this network and the original candidate list contained a substantial number of genes that affect mechanosensory bristles, which are hair-like organs distributed across the fly's body. These results may point to a potential role for mechanosensory bristles in shock sensation. Thus, we not only provide a first list of candidate genes for shock avoidance, but also point to an interesting new hypothesis on nociceptive mechanisms.</description><subject>Animals</subject><subject>Association analysis</subject><subject>Associative learning</subject><subject>Avoidance</subject><subject>Avoidance Learning</subject><subject>Bioinformatics</subject><subject>Biology</subject><subject>Bristles</subject><subject>DNA Transposable Elements</subject><subject>Drosophila</subject><subject>Drosophila melanogaster</subject><subject>Drosophila melanogaster - physiology</subject><subject>Electric shock injuries</subject><subject>Electroshock</subject><subject>Gene Deletion</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Gene Regulatory Networks</subject><subject>Gene sequencing</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Genetic Association 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Association Analyses Point to Candidate Genes for Electric Shock Avoidance in Drosophila melanogaster</title><author>Appel, Mirjam ; Scholz, Claus-Jürgen ; Müller, Tobias ; Dittrich, Marcus ; König, Christian ; Bockstaller, Marie ; Oguz, Tuba ; Khalili, Afshin ; Antwi-Adjei, Emmanuel ; Schauer, Tamas ; Margulies, Carla ; Tanimoto, Hiromu ; Yarali, Ayse</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c659t-d4dbe722679a851992fa6a02bc648c07cc651ffcb815f6b9db88f74b149c22813</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Animals</topic><topic>Association analysis</topic><topic>Associative learning</topic><topic>Avoidance</topic><topic>Avoidance Learning</topic><topic>Bioinformatics</topic><topic>Biology</topic><topic>Bristles</topic><topic>DNA Transposable Elements</topic><topic>Drosophila</topic><topic>Drosophila melanogaster</topic><topic>Drosophila melanogaster - 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subjects | Animals Association analysis Associative learning Avoidance Avoidance Learning Bioinformatics Biology Bristles DNA Transposable Elements Drosophila Drosophila melanogaster Drosophila melanogaster - physiology Electric shock injuries Electroshock Gene Deletion Gene expression Gene Expression Profiling Gene Regulatory Networks Gene sequencing Genes Genetic aspects Genetic Association Studies Genetics Genome-Wide Association Study Genomes Inbreeding Insects Locomotion Mutagenesis, Insertional Mutants Neurobiology Neurosciences Nociception Organs Pain perception Physiological aspects Physiology Protein interaction Proteins Reproducibility of Results Shock |
title | Genome-Wide Association Analyses Point to Candidate Genes for Electric Shock Avoidance in Drosophila melanogaster |
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