Genome-wide identification and expression profiling analysis of ZmPIN, ZmPILS, ZmLAX and ZmABCB auxin transporter gene families in maize (Zea mays L.) under various abiotic stresses
The auxin influx carriers auxin resistant 1/like aux 1 (AUX/LAX), efflux carriers pin-formed (PIN) (together with PIN-like proteins) and efflux/conditional P-glycoprotein (ABCB) are major protein families involved in auxin polar transport. However, how they function in responses to exogenous auxin a...
Gespeichert in:
| Veröffentlicht in: | PloS one 2015-03, Vol.10 (3), p.e0118751-e0118751 |
|---|---|
| Hauptverfasser: | , , , , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | e0118751 |
|---|---|
| container_issue | 3 |
| container_start_page | e0118751 |
| container_title | PloS one |
| container_volume | 10 |
| creator | Yue, Runqing Tie, Shuanggui Sun, Tao Zhang, Lei Yang, Yanjun Qi, Jianshuang Yan, Shufeng Han, Xiaohua Wang, Huizhong Shen, Chenjia |
| description | The auxin influx carriers auxin resistant 1/like aux 1 (AUX/LAX), efflux carriers pin-formed (PIN) (together with PIN-like proteins) and efflux/conditional P-glycoprotein (ABCB) are major protein families involved in auxin polar transport. However, how they function in responses to exogenous auxin and abiotic stresses in maize is largely unknown. In this work, the latest updated maize (Zea mays L.) reference genome sequence was used to characterize and analyze the ZmLAX, ZmPIN, ZmPILS and ZmABCB family genes from maize. The results showed that five ZmLAXs, fifteen ZmPINs, nine ZmPILSs and thirty-five ZmABCBs were mapped on all ten maize chromosomes. Highly diversified gene structures, nonconservative transmembrane helices and tissue-specific expression patterns suggested the possibility of function diversification for these genes. Quantitative real-time polymerase chain reaction (qRT-PCR) was used to analyze the expression patterns of ZmLAX, ZmPIN, ZmPILS and ZmABCB genes under exogenous auxin and different environmental stresses. The expression levels of most ZmPIN, ZmPILS, ZmLAX and ZmABCB genes were induced in shoots and were reduced in roots by various abiotic stresses (drought, salt and cold stresses). The opposite expression response patterns indicated the dynamic auxin transport between shoots and roots under abiotic stresses. Analysis of the expression patterns of ZmPIN, ZmPILS, ZmLAX and ZmABCB genes under drought, salt and cold treatment may help us to understand the possible roles of maize auxin transporter genes in responses and tolerance to environmental stresses. |
| doi_str_mv | 10.1371/journal.pone.0118751 |
| format | Article |
| fullrecord | <record><control><sourceid>gale_plos_</sourceid><recordid>TN_cdi_plos_journals_1660924832</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A429817276</galeid><doaj_id>oai_doaj_org_article_42f8c4385c424b3d8edab2cb2be7fb38</doaj_id><sourcerecordid>A429817276</sourcerecordid><originalsourceid>FETCH-LOGICAL-c692t-792f03412ac1fdaf2c983ccfd0dc4f7a9d853b91b4f18b9c3c9294e9674a416e3</originalsourceid><addsrcrecordid>eNqNk21rFDEQxxdRbK1-A9GAIC145-Zhn94I16L14LBiVaRvwmx2ck3ZTc5kt7Z-L7-f2fZaetIXsiyT3fnNP5PJTJI8p-mU8oK-PXODt9BOV87iNKW0LDL6INmmFWeTnKX84Z31VvIkhLM0zXiZ54-TLZYVguUs207-HKJ1HU5-mQZJfG1vtFHQG2cJ2IbgxcpjCOPnyjttWmOX0QHtZTCBOE1Ous_zT2-uzOJ4tIvZj6vIk262f7BPYLgwlvQebFg536MnS7RINHRRCwOJzg7MbyS7JwhxeRnIYrpHBttE9By8cUMgUBvXG0VCPyaD4WnySEMb8Nna7iTfPrz_evBxsjg6nB_MFhOVV6yfFBXTKReUgaK6Ac1UVXKldJM2SugCqqbMeF3RWmha1pXiqmKVwCovBAiaI99JXl7rrloX5LriQdI8TysmSs4iMb8mGgdncuVNB_5SOjDy6ofzSwk-pt6iFEyXSvAyU4KJmjclNlAzVbMaC13zMmq9W-821B02Kl6Gh3ZDdNNjzalcunMpeEbTdBTYXQt493PA0MvOBIVtCxZjGce8KWdZmY_oq3_Q-0-3ppYQD2CsdnFfNYrKmWBVSQtW5JGa3kPFp8HOqNiesW1wM2BvIyAyPV70SxhCkPPjL__PHn3fZF_fYU8R2v40uHYYuzlsguIaVN6F4FHfFpmmcpyum2rIcbrkerpi2Iu7F3QbdDNO_C_V0SGM</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1660924832</pqid></control><display><type>article</type><title>Genome-wide identification and expression profiling analysis of ZmPIN, ZmPILS, ZmLAX and ZmABCB auxin transporter gene families in maize (Zea mays L.) under various abiotic stresses</title><source>MEDLINE</source><source>Public Library of Science</source><source>PubMed Central</source><source>Directory of Open Access Journals</source><source>Free Full-Text Journals in Chemistry</source><source>EZB Electronic Journals Library</source><creator>Yue, Runqing ; Tie, Shuanggui ; Sun, Tao ; Zhang, Lei ; Yang, Yanjun ; Qi, Jianshuang ; Yan, Shufeng ; Han, Xiaohua ; Wang, Huizhong ; Shen, Chenjia</creator><creatorcontrib>Yue, Runqing ; Tie, Shuanggui ; Sun, Tao ; Zhang, Lei ; Yang, Yanjun ; Qi, Jianshuang ; Yan, Shufeng ; Han, Xiaohua ; Wang, Huizhong ; Shen, Chenjia</creatorcontrib><description>The auxin influx carriers auxin resistant 1/like aux 1 (AUX/LAX), efflux carriers pin-formed (PIN) (together with PIN-like proteins) and efflux/conditional P-glycoprotein (ABCB) are major protein families involved in auxin polar transport. However, how they function in responses to exogenous auxin and abiotic stresses in maize is largely unknown. In this work, the latest updated maize (Zea mays L.) reference genome sequence was used to characterize and analyze the ZmLAX, ZmPIN, ZmPILS and ZmABCB family genes from maize. The results showed that five ZmLAXs, fifteen ZmPINs, nine ZmPILSs and thirty-five ZmABCBs were mapped on all ten maize chromosomes. Highly diversified gene structures, nonconservative transmembrane helices and tissue-specific expression patterns suggested the possibility of function diversification for these genes. Quantitative real-time polymerase chain reaction (qRT-PCR) was used to analyze the expression patterns of ZmLAX, ZmPIN, ZmPILS and ZmABCB genes under exogenous auxin and different environmental stresses. The expression levels of most ZmPIN, ZmPILS, ZmLAX and ZmABCB genes were induced in shoots and were reduced in roots by various abiotic stresses (drought, salt and cold stresses). The opposite expression response patterns indicated the dynamic auxin transport between shoots and roots under abiotic stresses. Analysis of the expression patterns of ZmPIN, ZmPILS, ZmLAX and ZmABCB genes under drought, salt and cold treatment may help us to understand the possible roles of maize auxin transporter genes in responses and tolerance to environmental stresses.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0118751</identifier><identifier>PMID: 25742625</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Abiotic stress ; Arabidopsis ; Carriers ; Chromosomes ; Chromosomes, Plant ; Cold ; Cold treatment ; Corn ; Drought ; Efflux ; Environmental science ; Environmental stress ; Exons ; Gene expression ; Gene Expression Profiling ; Gene families ; Genes ; Genes, Plant ; Genetic aspects ; Genomes ; Genomics ; Glycoproteins ; Helices ; Indoleacetic Acids - metabolism ; Introns ; Membrane Transport Proteins - genetics ; Membrane Transport Proteins - metabolism ; Nucleotide sequence ; P-Glycoprotein ; Phylogeny ; Plant anatomy ; Polymerase chain reaction ; Promoter Regions, Genetic ; Protein families ; Proteins ; Rice ; Roots ; Salinity ; Salts ; Seeds ; Shoots ; Signal transduction ; Stress, Physiological ; Stresses ; Transport ; Zea mays ; Zea mays - genetics ; Zea mays - physiology</subject><ispartof>PloS one, 2015-03, Vol.10 (3), p.e0118751-e0118751</ispartof><rights>COPYRIGHT 2015 Public Library of Science</rights><rights>2015 Yue et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2015 Yue et al 2015 Yue et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-792f03412ac1fdaf2c983ccfd0dc4f7a9d853b91b4f18b9c3c9294e9674a416e3</citedby><cites>FETCH-LOGICAL-c692t-792f03412ac1fdaf2c983ccfd0dc4f7a9d853b91b4f18b9c3c9294e9674a416e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4351008/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4351008/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79342,79343</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25742625$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yue, Runqing</creatorcontrib><creatorcontrib>Tie, Shuanggui</creatorcontrib><creatorcontrib>Sun, Tao</creatorcontrib><creatorcontrib>Zhang, Lei</creatorcontrib><creatorcontrib>Yang, Yanjun</creatorcontrib><creatorcontrib>Qi, Jianshuang</creatorcontrib><creatorcontrib>Yan, Shufeng</creatorcontrib><creatorcontrib>Han, Xiaohua</creatorcontrib><creatorcontrib>Wang, Huizhong</creatorcontrib><creatorcontrib>Shen, Chenjia</creatorcontrib><title>Genome-wide identification and expression profiling analysis of ZmPIN, ZmPILS, ZmLAX and ZmABCB auxin transporter gene families in maize (Zea mays L.) under various abiotic stresses</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>The auxin influx carriers auxin resistant 1/like aux 1 (AUX/LAX), efflux carriers pin-formed (PIN) (together with PIN-like proteins) and efflux/conditional P-glycoprotein (ABCB) are major protein families involved in auxin polar transport. However, how they function in responses to exogenous auxin and abiotic stresses in maize is largely unknown. In this work, the latest updated maize (Zea mays L.) reference genome sequence was used to characterize and analyze the ZmLAX, ZmPIN, ZmPILS and ZmABCB family genes from maize. The results showed that five ZmLAXs, fifteen ZmPINs, nine ZmPILSs and thirty-five ZmABCBs were mapped on all ten maize chromosomes. Highly diversified gene structures, nonconservative transmembrane helices and tissue-specific expression patterns suggested the possibility of function diversification for these genes. Quantitative real-time polymerase chain reaction (qRT-PCR) was used to analyze the expression patterns of ZmLAX, ZmPIN, ZmPILS and ZmABCB genes under exogenous auxin and different environmental stresses. The expression levels of most ZmPIN, ZmPILS, ZmLAX and ZmABCB genes were induced in shoots and were reduced in roots by various abiotic stresses (drought, salt and cold stresses). The opposite expression response patterns indicated the dynamic auxin transport between shoots and roots under abiotic stresses. Analysis of the expression patterns of ZmPIN, ZmPILS, ZmLAX and ZmABCB genes under drought, salt and cold treatment may help us to understand the possible roles of maize auxin transporter genes in responses and tolerance to environmental stresses.</description><subject>Abiotic stress</subject><subject>Arabidopsis</subject><subject>Carriers</subject><subject>Chromosomes</subject><subject>Chromosomes, Plant</subject><subject>Cold</subject><subject>Cold treatment</subject><subject>Corn</subject><subject>Drought</subject><subject>Efflux</subject><subject>Environmental science</subject><subject>Environmental stress</subject><subject>Exons</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Gene families</subject><subject>Genes</subject><subject>Genes, Plant</subject><subject>Genetic aspects</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Glycoproteins</subject><subject>Helices</subject><subject>Indoleacetic Acids - metabolism</subject><subject>Introns</subject><subject>Membrane Transport Proteins - genetics</subject><subject>Membrane Transport Proteins - metabolism</subject><subject>Nucleotide sequence</subject><subject>P-Glycoprotein</subject><subject>Phylogeny</subject><subject>Plant anatomy</subject><subject>Polymerase chain reaction</subject><subject>Promoter Regions, Genetic</subject><subject>Protein families</subject><subject>Proteins</subject><subject>Rice</subject><subject>Roots</subject><subject>Salinity</subject><subject>Salts</subject><subject>Seeds</subject><subject>Shoots</subject><subject>Signal transduction</subject><subject>Stress, Physiological</subject><subject>Stresses</subject><subject>Transport</subject><subject>Zea mays</subject><subject>Zea mays - genetics</subject><subject>Zea mays - physiology</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNqNk21rFDEQxxdRbK1-A9GAIC145-Zhn94I16L14LBiVaRvwmx2ck3ZTc5kt7Z-L7-f2fZaetIXsiyT3fnNP5PJTJI8p-mU8oK-PXODt9BOV87iNKW0LDL6INmmFWeTnKX84Z31VvIkhLM0zXiZ54-TLZYVguUs207-HKJ1HU5-mQZJfG1vtFHQG2cJ2IbgxcpjCOPnyjttWmOX0QHtZTCBOE1Ous_zT2-uzOJ4tIvZj6vIk262f7BPYLgwlvQebFg536MnS7RINHRRCwOJzg7MbyS7JwhxeRnIYrpHBttE9By8cUMgUBvXG0VCPyaD4WnySEMb8Nna7iTfPrz_evBxsjg6nB_MFhOVV6yfFBXTKReUgaK6Ac1UVXKldJM2SugCqqbMeF3RWmha1pXiqmKVwCovBAiaI99JXl7rrloX5LriQdI8TysmSs4iMb8mGgdncuVNB_5SOjDy6ofzSwk-pt6iFEyXSvAyU4KJmjclNlAzVbMaC13zMmq9W-821B02Kl6Gh3ZDdNNjzalcunMpeEbTdBTYXQt493PA0MvOBIVtCxZjGce8KWdZmY_oq3_Q-0-3ppYQD2CsdnFfNYrKmWBVSQtW5JGa3kPFp8HOqNiesW1wM2BvIyAyPV70SxhCkPPjL__PHn3fZF_fYU8R2v40uHYYuzlsguIaVN6F4FHfFpmmcpyum2rIcbrkerpi2Iu7F3QbdDNO_C_V0SGM</recordid><startdate>20150305</startdate><enddate>20150305</enddate><creator>Yue, Runqing</creator><creator>Tie, Shuanggui</creator><creator>Sun, Tao</creator><creator>Zhang, Lei</creator><creator>Yang, Yanjun</creator><creator>Qi, Jianshuang</creator><creator>Yan, Shufeng</creator><creator>Han, Xiaohua</creator><creator>Wang, Huizhong</creator><creator>Shen, Chenjia</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20150305</creationdate><title>Genome-wide identification and expression profiling analysis of ZmPIN, ZmPILS, ZmLAX and ZmABCB auxin transporter gene families in maize (Zea mays L.) under various abiotic stresses</title><author>Yue, Runqing ; Tie, Shuanggui ; Sun, Tao ; Zhang, Lei ; Yang, Yanjun ; Qi, Jianshuang ; Yan, Shufeng ; Han, Xiaohua ; Wang, Huizhong ; Shen, Chenjia</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c692t-792f03412ac1fdaf2c983ccfd0dc4f7a9d853b91b4f18b9c3c9294e9674a416e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Abiotic stress</topic><topic>Arabidopsis</topic><topic>Carriers</topic><topic>Chromosomes</topic><topic>Chromosomes, Plant</topic><topic>Cold</topic><topic>Cold treatment</topic><topic>Corn</topic><topic>Drought</topic><topic>Efflux</topic><topic>Environmental science</topic><topic>Environmental stress</topic><topic>Exons</topic><topic>Gene expression</topic><topic>Gene Expression Profiling</topic><topic>Gene families</topic><topic>Genes</topic><topic>Genes, Plant</topic><topic>Genetic aspects</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Glycoproteins</topic><topic>Helices</topic><topic>Indoleacetic Acids - metabolism</topic><topic>Introns</topic><topic>Membrane Transport Proteins - genetics</topic><topic>Membrane Transport Proteins - metabolism</topic><topic>Nucleotide sequence</topic><topic>P-Glycoprotein</topic><topic>Phylogeny</topic><topic>Plant anatomy</topic><topic>Polymerase chain reaction</topic><topic>Promoter Regions, Genetic</topic><topic>Protein families</topic><topic>Proteins</topic><topic>Rice</topic><topic>Roots</topic><topic>Salinity</topic><topic>Salts</topic><topic>Seeds</topic><topic>Shoots</topic><topic>Signal transduction</topic><topic>Stress, Physiological</topic><topic>Stresses</topic><topic>Transport</topic><topic>Zea mays</topic><topic>Zea mays - genetics</topic><topic>Zea mays - physiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yue, Runqing</creatorcontrib><creatorcontrib>Tie, Shuanggui</creatorcontrib><creatorcontrib>Sun, Tao</creatorcontrib><creatorcontrib>Zhang, Lei</creatorcontrib><creatorcontrib>Yang, Yanjun</creatorcontrib><creatorcontrib>Qi, Jianshuang</creatorcontrib><creatorcontrib>Yan, Shufeng</creatorcontrib><creatorcontrib>Han, Xiaohua</creatorcontrib><creatorcontrib>Wang, Huizhong</creatorcontrib><creatorcontrib>Shen, Chenjia</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale in Context : Opposing Viewpoints</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Proquest Nursing & Allied Health Source</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Meteorological & Geoastrophysical Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>ProQuest Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>ProQuest Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Database (1962 - current)</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>https://resources.nclive.org/materials</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>Meteorological & Geoastrophysical Abstracts - Academic</collection><collection>ProQuest Engineering Collection</collection><collection>Biological Sciences</collection><collection>Agriculture Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>PML(ProQuest Medical Library)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Nursing & Allied Health Premium</collection><collection>ProQuest advanced technologies & aerospace journals</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Materials Science Collection</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering collection</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yue, Runqing</au><au>Tie, Shuanggui</au><au>Sun, Tao</au><au>Zhang, Lei</au><au>Yang, Yanjun</au><au>Qi, Jianshuang</au><au>Yan, Shufeng</au><au>Han, Xiaohua</au><au>Wang, Huizhong</au><au>Shen, Chenjia</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-wide identification and expression profiling analysis of ZmPIN, ZmPILS, ZmLAX and ZmABCB auxin transporter gene families in maize (Zea mays L.) under various abiotic stresses</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2015-03-05</date><risdate>2015</risdate><volume>10</volume><issue>3</issue><spage>e0118751</spage><epage>e0118751</epage><pages>e0118751-e0118751</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>The auxin influx carriers auxin resistant 1/like aux 1 (AUX/LAX), efflux carriers pin-formed (PIN) (together with PIN-like proteins) and efflux/conditional P-glycoprotein (ABCB) are major protein families involved in auxin polar transport. However, how they function in responses to exogenous auxin and abiotic stresses in maize is largely unknown. In this work, the latest updated maize (Zea mays L.) reference genome sequence was used to characterize and analyze the ZmLAX, ZmPIN, ZmPILS and ZmABCB family genes from maize. The results showed that five ZmLAXs, fifteen ZmPINs, nine ZmPILSs and thirty-five ZmABCBs were mapped on all ten maize chromosomes. Highly diversified gene structures, nonconservative transmembrane helices and tissue-specific expression patterns suggested the possibility of function diversification for these genes. Quantitative real-time polymerase chain reaction (qRT-PCR) was used to analyze the expression patterns of ZmLAX, ZmPIN, ZmPILS and ZmABCB genes under exogenous auxin and different environmental stresses. The expression levels of most ZmPIN, ZmPILS, ZmLAX and ZmABCB genes were induced in shoots and were reduced in roots by various abiotic stresses (drought, salt and cold stresses). The opposite expression response patterns indicated the dynamic auxin transport between shoots and roots under abiotic stresses. Analysis of the expression patterns of ZmPIN, ZmPILS, ZmLAX and ZmABCB genes under drought, salt and cold treatment may help us to understand the possible roles of maize auxin transporter genes in responses and tolerance to environmental stresses.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>25742625</pmid><doi>10.1371/journal.pone.0118751</doi><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1932-6203 |
| ispartof | PloS one, 2015-03, Vol.10 (3), p.e0118751-e0118751 |
| issn | 1932-6203 1932-6203 |
| language | eng |
| recordid | cdi_plos_journals_1660924832 |
| source | MEDLINE; Public Library of Science; PubMed Central; Directory of Open Access Journals; Free Full-Text Journals in Chemistry; EZB Electronic Journals Library |
| subjects | Abiotic stress Arabidopsis Carriers Chromosomes Chromosomes, Plant Cold Cold treatment Corn Drought Efflux Environmental science Environmental stress Exons Gene expression Gene Expression Profiling Gene families Genes Genes, Plant Genetic aspects Genomes Genomics Glycoproteins Helices Indoleacetic Acids - metabolism Introns Membrane Transport Proteins - genetics Membrane Transport Proteins - metabolism Nucleotide sequence P-Glycoprotein Phylogeny Plant anatomy Polymerase chain reaction Promoter Regions, Genetic Protein families Proteins Rice Roots Salinity Salts Seeds Shoots Signal transduction Stress, Physiological Stresses Transport Zea mays Zea mays - genetics Zea mays - physiology |
| title | Genome-wide identification and expression profiling analysis of ZmPIN, ZmPILS, ZmLAX and ZmABCB auxin transporter gene families in maize (Zea mays L.) under various abiotic stresses |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-07T17%3A43%3A14IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genome-wide%20identification%20and%20expression%20profiling%20analysis%20of%20ZmPIN,%20ZmPILS,%20ZmLAX%20and%20ZmABCB%20auxin%20transporter%20gene%20families%20in%20maize%20(Zea%20mays%20L.)%20under%20various%20abiotic%20stresses&rft.jtitle=PloS%20one&rft.au=Yue,%20Runqing&rft.date=2015-03-05&rft.volume=10&rft.issue=3&rft.spage=e0118751&rft.epage=e0118751&rft.pages=e0118751-e0118751&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0118751&rft_dat=%3Cgale_plos_%3EA429817276%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1660924832&rft_id=info:pmid/25742625&rft_galeid=A429817276&rft_doaj_id=oai_doaj_org_article_42f8c4385c424b3d8edab2cb2be7fb38&rfr_iscdi=true |