Structure-function analysis of porcine cytochrome P450 3A29 in the hydroxylation of T-2 toxin as revealed by docking and mutagenesis studies
T-2 toxin, one of the type A trichothecenes, presents a potential hazard to human and animal health. Our previous work demonstrated that porcine cytochrome P450 3A29 (CYP3A29) played an important role in the hydroxylation of T-2 toxin. To identify amino acids involved in this metabolic process, T-2...
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description | T-2 toxin, one of the type A trichothecenes, presents a potential hazard to human and animal health. Our previous work demonstrated that porcine cytochrome P450 3A29 (CYP3A29) played an important role in the hydroxylation of T-2 toxin. To identify amino acids involved in this metabolic process, T-2 toxin was docked into a homology model of CYP3A29 based on a crystal structure of CYP3A4 using AutoDock 4.0. Nine residues of CYP3A29, Arg105, Arg106, Phe108, Ser119, Lys212, Phe213, Phe215, Arg372 and Glu374, which were found within 5 Å around T-2 toxin were subjected to site-directed mutagenesis. In the oxidation of nifedipine, the CLint value of R106A was increased by nearly two-folds compared with the wild-type CYP3A29, while the substrate affinities and CLint values of S119A and K212A were significantly reduced. In the hydroxylation of T-2 toxin, the generation of 3'-OH-T-2 by R105A, S119A and K212A was significantly less than that by the wild-type, whereas R106A slightly increased the generation of 3'-OH-T-2. These results were further confirmed by isothermal titration calorimetry analysis, suggesting that these four residues are important in the hydroxylation of T-2 toxin and Arg105 may be a specific recognition site for the toxin. Our study suggests a possible structure-function relationship of CYP3A29 in the hydroxylation of T-2 toxin, providing with new insights into the mechanism of CYP3A enzymes in the biotransformation of T-2 toxin. |
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Our previous work demonstrated that porcine cytochrome P450 3A29 (CYP3A29) played an important role in the hydroxylation of T-2 toxin. To identify amino acids involved in this metabolic process, T-2 toxin was docked into a homology model of CYP3A29 based on a crystal structure of CYP3A4 using AutoDock 4.0. Nine residues of CYP3A29, Arg105, Arg106, Phe108, Ser119, Lys212, Phe213, Phe215, Arg372 and Glu374, which were found within 5 Å around T-2 toxin were subjected to site-directed mutagenesis. In the oxidation of nifedipine, the CLint value of R106A was increased by nearly two-folds compared with the wild-type CYP3A29, while the substrate affinities and CLint values of S119A and K212A were significantly reduced. In the hydroxylation of T-2 toxin, the generation of 3'-OH-T-2 by R105A, S119A and K212A was significantly less than that by the wild-type, whereas R106A slightly increased the generation of 3'-OH-T-2. These results were further confirmed by isothermal titration calorimetry analysis, suggesting that these four residues are important in the hydroxylation of T-2 toxin and Arg105 may be a specific recognition site for the toxin. Our study suggests a possible structure-function relationship of CYP3A29 in the hydroxylation of T-2 toxin, providing with new insights into the mechanism of CYP3A enzymes in the biotransformation of T-2 toxin.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0106769</identifier><identifier>PMID: 25184434</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Amino acids ; Analysis ; Animal health ; Animals ; Biochemistry ; Biology and Life Sciences ; Biotransformation ; Calorimetry ; Crystal structure ; Cytochrome ; Cytochrome P-450 ; Cytochrome P-450 Enzyme System - chemistry ; Cytochrome P-450 Enzyme System - genetics ; Cytochrome P-450 Enzyme System - metabolism ; Cytochrome P450 ; Cytotoxicity ; Docking ; Enzymes ; Function analysis ; Homology ; Humans ; Hydroxylation ; Laboratories ; Ligands ; Livestock ; Metabolism ; Metabolites ; Molecular Docking Simulation ; Mutagenesis ; Nifedipine ; Oxidation ; Poultry ; Protein synthesis ; Quality ; Residues ; Risk assessment ; Site-directed mutagenesis ; Structure-Activity Relationship ; Structure-function relationships ; Studies ; Substrates ; Swine ; T-2 Toxin ; Titration ; Titration calorimetry ; Toxins ; Trichothecenes</subject><ispartof>PloS one, 2014-09, Vol.9 (9), p.e106769</ispartof><rights>COPYRIGHT 2014 Public Library of Science</rights><rights>2014 Cheng et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2014 Cheng et al 2014 Cheng et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-469ce8956f145a9fe7e0e0abc8531d208b486c3123404cf7de96fb5493f12e113</citedby><cites>FETCH-LOGICAL-c692t-469ce8956f145a9fe7e0e0abc8531d208b486c3123404cf7de96fb5493f12e113</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4153680/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4153680/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23847,27903,27904,53769,53771,79346,79347</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25184434$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Porollo, Alexey</contributor><creatorcontrib>Cheng, Guyue</creatorcontrib><creatorcontrib>Liu, Changcun</creatorcontrib><creatorcontrib>Wang, Xu</creatorcontrib><creatorcontrib>Ma, Hongmin</creatorcontrib><creatorcontrib>Pan, Yuanhu</creatorcontrib><creatorcontrib>Huang, Lingli</creatorcontrib><creatorcontrib>Hao, Haihong</creatorcontrib><creatorcontrib>Dai, Menghong</creatorcontrib><creatorcontrib>Yuan, Zonghui</creatorcontrib><title>Structure-function analysis of porcine cytochrome P450 3A29 in the hydroxylation of T-2 toxin as revealed by docking and mutagenesis studies</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>T-2 toxin, one of the type A trichothecenes, presents a potential hazard to human and animal health. Our previous work demonstrated that porcine cytochrome P450 3A29 (CYP3A29) played an important role in the hydroxylation of T-2 toxin. To identify amino acids involved in this metabolic process, T-2 toxin was docked into a homology model of CYP3A29 based on a crystal structure of CYP3A4 using AutoDock 4.0. Nine residues of CYP3A29, Arg105, Arg106, Phe108, Ser119, Lys212, Phe213, Phe215, Arg372 and Glu374, which were found within 5 Å around T-2 toxin were subjected to site-directed mutagenesis. In the oxidation of nifedipine, the CLint value of R106A was increased by nearly two-folds compared with the wild-type CYP3A29, while the substrate affinities and CLint values of S119A and K212A were significantly reduced. In the hydroxylation of T-2 toxin, the generation of 3'-OH-T-2 by R105A, S119A and K212A was significantly less than that by the wild-type, whereas R106A slightly increased the generation of 3'-OH-T-2. These results were further confirmed by isothermal titration calorimetry analysis, suggesting that these four residues are important in the hydroxylation of T-2 toxin and Arg105 may be a specific recognition site for the toxin. Our study suggests a possible structure-function relationship of CYP3A29 in the hydroxylation of T-2 toxin, providing with new insights into the mechanism of CYP3A enzymes in the biotransformation of T-2 toxin.</description><subject>Amino acids</subject><subject>Analysis</subject><subject>Animal health</subject><subject>Animals</subject><subject>Biochemistry</subject><subject>Biology and Life Sciences</subject><subject>Biotransformation</subject><subject>Calorimetry</subject><subject>Crystal structure</subject><subject>Cytochrome</subject><subject>Cytochrome P-450</subject><subject>Cytochrome P-450 Enzyme System - chemistry</subject><subject>Cytochrome P-450 Enzyme System - genetics</subject><subject>Cytochrome P-450 Enzyme System - metabolism</subject><subject>Cytochrome P450</subject><subject>Cytotoxicity</subject><subject>Docking</subject><subject>Enzymes</subject><subject>Function analysis</subject><subject>Homology</subject><subject>Humans</subject><subject>Hydroxylation</subject><subject>Laboratories</subject><subject>Ligands</subject><subject>Livestock</subject><subject>Metabolism</subject><subject>Metabolites</subject><subject>Molecular Docking Simulation</subject><subject>Mutagenesis</subject><subject>Nifedipine</subject><subject>Oxidation</subject><subject>Poultry</subject><subject>Protein synthesis</subject><subject>Quality</subject><subject>Residues</subject><subject>Risk assessment</subject><subject>Site-directed mutagenesis</subject><subject>Structure-Activity Relationship</subject><subject>Structure-function relationships</subject><subject>Studies</subject><subject>Substrates</subject><subject>Swine</subject><subject>T-2 Toxin</subject><subject>Titration</subject><subject>Titration calorimetry</subject><subject>Toxins</subject><subject>Trichothecenes</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNqNk11rFDEUhgdRbK3-A9GAIHixa75nciMsxY9CoWKrtyGTOdnNOjtZk0zp_gd_tNnutnRBQXKRkDzve8LLOVX1kuApYTV5vwxjHEw_XYcBpphgWUv1qDomitGJpJg9fnA-qp6ltMRYsEbKp9URFaThnPHj6vdljqPNY4SJGwebfRiQKbab5BMKDq1DtH4AZDc52EUMK0BfucCIzahCfkB5AWix6WK42fTmVl1EVxOKcrgpzyahCNdgeuhQu0FdsD_9MC8VOrQas5nDANtCKY-dh_S8euJMn-DFfj-pvn_6eHX6ZXJ-8fnsdHY-sVLRPOFSWWiUkI5wYZSDGjBg09pGMNJR3LS8kZYRyjjm1tUdKOlawRVzhAIh7KR6vfNd9yHpfZBJEyGU5ISrphBnO6ILZqnX0a9M3OhgvL69CHGuTcze9qBbW9eClDBd5ziVtLVKgWU1F11NKN5W-7CvNrYr6CwMOZr-wPTwZfALPQ_XmhPBZIOLwZu9QQy_Rkj5H1_eU_OStvaDC8XMrnyyesaJVLVoOC3U9C9UWR2svC2t5Hy5PxC8OxAUJsNNnpsxJX12-e3_2Ysfh-zbB-yitEhepNCP2x5KhyDfgTaGlCK4--QI1ttJuEtDbydB7yehyF49TP1edNf67A-fQgQR</recordid><startdate>20140903</startdate><enddate>20140903</enddate><creator>Cheng, 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analysis of porcine cytochrome P450 3A29 in the hydroxylation of T-2 toxin as revealed by docking and mutagenesis studies</title><author>Cheng, Guyue ; Liu, Changcun ; Wang, Xu ; Ma, Hongmin ; Pan, Yuanhu ; Huang, Lingli ; Hao, Haihong ; Dai, Menghong ; Yuan, Zonghui</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c692t-469ce8956f145a9fe7e0e0abc8531d208b486c3123404cf7de96fb5493f12e113</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Amino acids</topic><topic>Analysis</topic><topic>Animal health</topic><topic>Animals</topic><topic>Biochemistry</topic><topic>Biology and Life Sciences</topic><topic>Biotransformation</topic><topic>Calorimetry</topic><topic>Crystal structure</topic><topic>Cytochrome</topic><topic>Cytochrome P-450</topic><topic>Cytochrome P-450 Enzyme System - chemistry</topic><topic>Cytochrome P-450 Enzyme System - genetics</topic><topic>Cytochrome P-450 Enzyme System - metabolism</topic><topic>Cytochrome P450</topic><topic>Cytotoxicity</topic><topic>Docking</topic><topic>Enzymes</topic><topic>Function analysis</topic><topic>Homology</topic><topic>Humans</topic><topic>Hydroxylation</topic><topic>Laboratories</topic><topic>Ligands</topic><topic>Livestock</topic><topic>Metabolism</topic><topic>Metabolites</topic><topic>Molecular Docking Simulation</topic><topic>Mutagenesis</topic><topic>Nifedipine</topic><topic>Oxidation</topic><topic>Poultry</topic><topic>Protein synthesis</topic><topic>Quality</topic><topic>Residues</topic><topic>Risk assessment</topic><topic>Site-directed mutagenesis</topic><topic>Structure-Activity Relationship</topic><topic>Structure-function relationships</topic><topic>Studies</topic><topic>Substrates</topic><topic>Swine</topic><topic>T-2 Toxin</topic><topic>Titration</topic><topic>Titration 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trichothecenes, presents a potential hazard to human and animal health. Our previous work demonstrated that porcine cytochrome P450 3A29 (CYP3A29) played an important role in the hydroxylation of T-2 toxin. To identify amino acids involved in this metabolic process, T-2 toxin was docked into a homology model of CYP3A29 based on a crystal structure of CYP3A4 using AutoDock 4.0. Nine residues of CYP3A29, Arg105, Arg106, Phe108, Ser119, Lys212, Phe213, Phe215, Arg372 and Glu374, which were found within 5 Å around T-2 toxin were subjected to site-directed mutagenesis. In the oxidation of nifedipine, the CLint value of R106A was increased by nearly two-folds compared with the wild-type CYP3A29, while the substrate affinities and CLint values of S119A and K212A were significantly reduced. In the hydroxylation of T-2 toxin, the generation of 3'-OH-T-2 by R105A, S119A and K212A was significantly less than that by the wild-type, whereas R106A slightly increased the generation of 3'-OH-T-2. These results were further confirmed by isothermal titration calorimetry analysis, suggesting that these four residues are important in the hydroxylation of T-2 toxin and Arg105 may be a specific recognition site for the toxin. Our study suggests a possible structure-function relationship of CYP3A29 in the hydroxylation of T-2 toxin, providing with new insights into the mechanism of CYP3A enzymes in the biotransformation of T-2 toxin.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>25184434</pmid><doi>10.1371/journal.pone.0106769</doi><oa>free_for_read</oa></addata></record> |
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subjects | Amino acids Analysis Animal health Animals Biochemistry Biology and Life Sciences Biotransformation Calorimetry Crystal structure Cytochrome Cytochrome P-450 Cytochrome P-450 Enzyme System - chemistry Cytochrome P-450 Enzyme System - genetics Cytochrome P-450 Enzyme System - metabolism Cytochrome P450 Cytotoxicity Docking Enzymes Function analysis Homology Humans Hydroxylation Laboratories Ligands Livestock Metabolism Metabolites Molecular Docking Simulation Mutagenesis Nifedipine Oxidation Poultry Protein synthesis Quality Residues Risk assessment Site-directed mutagenesis Structure-Activity Relationship Structure-function relationships Studies Substrates Swine T-2 Toxin Titration Titration calorimetry Toxins Trichothecenes |
title | Structure-function analysis of porcine cytochrome P450 3A29 in the hydroxylation of T-2 toxin as revealed by docking and mutagenesis studies |
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