Molecular phylogeny and biogeographic history of the armored neotropical catfish subfamilies hypoptopomatinae, neoplecostominae and otothyrinae (siluriformes: loricariidae)
The main objectives of this study are estimate a species-dense, time-calibrated molecular phylogeny of Hypoptopomatinae, Neoplecostominae, and Otothyrinae, which together comprise a group of armoured catfishes that is widely distributed across South America, to place the origin of major clades in ti...
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| creator | Roxo, Fábio F Albert, James S Silva, Gabriel S C Zawadzki, Cláudio H Foresti, Fausto Oliveira, Claudio |
| description | The main objectives of this study are estimate a species-dense, time-calibrated molecular phylogeny of Hypoptopomatinae, Neoplecostominae, and Otothyrinae, which together comprise a group of armoured catfishes that is widely distributed across South America, to place the origin of major clades in time and space, and to demonstrate the role of river capture on patterns of diversification in these taxa. We used maximum likelihood and Bayesian methods to estimate a time-calibrated phylogeny of 115 loricariid species, using three mitochondrial and one nuclear genes to generate a matrix of 4,500 base pairs, and used parametric biogeographic analyses to estimate ancestral geographic ranges and to infer the effects of river capture events on the geographic distributions of these taxa. Our analysis recovered Hypoptopomatinae, Neoplecostominae, and Otothyrinae as monophyletic with strong statistical support, and Neoplecostominae as more closely related to Otothyrinae than to Hypoptopomatinae. Our time-calibrated phylogeny and ancestral-area estimations indicate an origin of Hypoptopomatinae, Neoplecostominae, and Otothyrinae during the Lower Eocene in the Atlantic Coastal Drainages, from which it is possible to infer several dispersal events to adjacent river basins during the Neogene. In conclusion we infer a strong influence of river capture in: (1) the accumulation of modern clade species-richness values; (2) the formation of the modern basin-wide species assemblages, and (3) the presence of many low-diversity, early-branching lineages restricted to the Atlantic Coastal Drainages. We further infer the importance of headwater stream capture and marine transgressions in shaping patterns in the distributions of Hypoptopomatinae, Neoplecostominae and Otothyrinae throughout South America. |
| doi_str_mv | 10.1371/journal.pone.0105564 |
| format | Article |
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We used maximum likelihood and Bayesian methods to estimate a time-calibrated phylogeny of 115 loricariid species, using three mitochondrial and one nuclear genes to generate a matrix of 4,500 base pairs, and used parametric biogeographic analyses to estimate ancestral geographic ranges and to infer the effects of river capture events on the geographic distributions of these taxa. Our analysis recovered Hypoptopomatinae, Neoplecostominae, and Otothyrinae as monophyletic with strong statistical support, and Neoplecostominae as more closely related to Otothyrinae than to Hypoptopomatinae. Our time-calibrated phylogeny and ancestral-area estimations indicate an origin of Hypoptopomatinae, Neoplecostominae, and Otothyrinae during the Lower Eocene in the Atlantic Coastal Drainages, from which it is possible to infer several dispersal events to adjacent river basins during the Neogene. In conclusion we infer a strong influence of river capture in: (1) the accumulation of modern clade species-richness values; (2) the formation of the modern basin-wide species assemblages, and (3) the presence of many low-diversity, early-branching lineages restricted to the Atlantic Coastal Drainages. We further infer the importance of headwater stream capture and marine transgressions in shaping patterns in the distributions of Hypoptopomatinae, Neoplecostominae and Otothyrinae throughout South America.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0105564</identifier><identifier>PMID: 25148406</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Analysis ; Animals ; Astroblepus ; Base pairs ; Bayesian analysis ; Biodiversity ; Biogeography ; Biology and life sciences ; Brazil ; Calibration ; Catfish ; Catfishes - classification ; Catfishes - genetics ; Coastal environments ; Creeks & streams ; Diplomystidae ; Dispersal ; Ecology ; Ecology and Environmental Sciences ; Endangered & extinct species ; Eocene ; Evolution ; Evolution, Molecular ; Extinction ; Fish ; Fishes ; Geographical distribution ; Geomorphology ; Hypoptopomatinae ; Loricariidae ; Macroevolution ; Marine transgressions ; Mitochondria ; Morphology ; Neogene ; Neoplecostominae ; Phylogenetics ; Phylogeny ; Phylogeography ; Research and Analysis Methods ; River basins ; Rivers ; Siluriformes ; Species ; Species diversity ; Species richness ; Stream capture ; Taxa ; Taxonomy ; Trends ; Watersheds</subject><ispartof>PloS one, 2014-08, Vol.9 (8), p.e105564-e105564</ispartof><rights>COPYRIGHT 2014 Public Library of Science</rights><rights>2014 Roxo et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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We further infer the importance of headwater stream capture and marine transgressions in shaping patterns in the distributions of Hypoptopomatinae, Neoplecostominae and Otothyrinae throughout South America.</description><subject>Analysis</subject><subject>Animals</subject><subject>Astroblepus</subject><subject>Base pairs</subject><subject>Bayesian analysis</subject><subject>Biodiversity</subject><subject>Biogeography</subject><subject>Biology and life sciences</subject><subject>Brazil</subject><subject>Calibration</subject><subject>Catfish</subject><subject>Catfishes - classification</subject><subject>Catfishes - genetics</subject><subject>Coastal environments</subject><subject>Creeks & streams</subject><subject>Diplomystidae</subject><subject>Dispersal</subject><subject>Ecology</subject><subject>Ecology and Environmental Sciences</subject><subject>Endangered & extinct species</subject><subject>Eocene</subject><subject>Evolution</subject><subject>Evolution, 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phylogeny and biogeographic history of the armored neotropical catfish subfamilies hypoptopomatinae, neoplecostominae and otothyrinae (siluriformes: loricariidae)</title><author>Roxo, Fábio F ; Albert, James S ; Silva, Gabriel S C ; Zawadzki, Cláudio H ; Foresti, Fausto ; Oliveira, Claudio</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a715t-afef21028509563463ba3ea5ca28ad81859bc35ed66579de78a7f75031fb63b93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Analysis</topic><topic>Animals</topic><topic>Astroblepus</topic><topic>Base pairs</topic><topic>Bayesian analysis</topic><topic>Biodiversity</topic><topic>Biogeography</topic><topic>Biology and life sciences</topic><topic>Brazil</topic><topic>Calibration</topic><topic>Catfish</topic><topic>Catfishes - classification</topic><topic>Catfishes - genetics</topic><topic>Coastal environments</topic><topic>Creeks & 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We used maximum likelihood and Bayesian methods to estimate a time-calibrated phylogeny of 115 loricariid species, using three mitochondrial and one nuclear genes to generate a matrix of 4,500 base pairs, and used parametric biogeographic analyses to estimate ancestral geographic ranges and to infer the effects of river capture events on the geographic distributions of these taxa. Our analysis recovered Hypoptopomatinae, Neoplecostominae, and Otothyrinae as monophyletic with strong statistical support, and Neoplecostominae as more closely related to Otothyrinae than to Hypoptopomatinae. Our time-calibrated phylogeny and ancestral-area estimations indicate an origin of Hypoptopomatinae, Neoplecostominae, and Otothyrinae during the Lower Eocene in the Atlantic Coastal Drainages, from which it is possible to infer several dispersal events to adjacent river basins during the Neogene. In conclusion we infer a strong influence of river capture in: (1) the accumulation of modern clade species-richness values; (2) the formation of the modern basin-wide species assemblages, and (3) the presence of many low-diversity, early-branching lineages restricted to the Atlantic Coastal Drainages. We further infer the importance of headwater stream capture and marine transgressions in shaping patterns in the distributions of Hypoptopomatinae, Neoplecostominae and Otothyrinae throughout South America.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>25148406</pmid><doi>10.1371/journal.pone.0105564</doi><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1932-6203 |
| ispartof | PloS one, 2014-08, Vol.9 (8), p.e105564-e105564 |
| issn | 1932-6203 1932-6203 |
| language | eng |
| recordid | cdi_plos_journals_1555403542 |
| source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Free Full-Text Journals in Chemistry; Public Library of Science (PLoS) |
| subjects | Analysis Animals Astroblepus Base pairs Bayesian analysis Biodiversity Biogeography Biology and life sciences Brazil Calibration Catfish Catfishes - classification Catfishes - genetics Coastal environments Creeks & streams Diplomystidae Dispersal Ecology Ecology and Environmental Sciences Endangered & extinct species Eocene Evolution Evolution, Molecular Extinction Fish Fishes Geographical distribution Geomorphology Hypoptopomatinae Loricariidae Macroevolution Marine transgressions Mitochondria Morphology Neogene Neoplecostominae Phylogenetics Phylogeny Phylogeography Research and Analysis Methods River basins Rivers Siluriformes Species Species diversity Species richness Stream capture Taxa Taxonomy Trends Watersheds |
| title | Molecular phylogeny and biogeographic history of the armored neotropical catfish subfamilies hypoptopomatinae, neoplecostominae and otothyrinae (siluriformes: loricariidae) |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-07T00%3A24%3A26IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Molecular%20phylogeny%20and%20biogeographic%20history%20of%20the%20armored%20neotropical%20catfish%20subfamilies%20hypoptopomatinae,%20neoplecostominae%20and%20otothyrinae%20(siluriformes:%20loricariidae)&rft.jtitle=PloS%20one&rft.au=Roxo,%20F%C3%A1bio%20F&rft.date=2014-08-22&rft.volume=9&rft.issue=8&rft.spage=e105564&rft.epage=e105564&rft.pages=e105564-e105564&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0105564&rft_dat=%3Cgale_plos_%3EA418126952%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1555403542&rft_id=info:pmid/25148406&rft_galeid=A418126952&rft_doaj_id=oai_doaj_org_article_6c7999a001694673a6235a665bf81bdb&rfr_iscdi=true |