Transcriptome analysis of the mud crab (Scylla paramamosain) by 454 deep sequencing: assembly, annotation, and marker discovery

In this study, we reported the characterization of the first transcriptome of the mud crab (Scylla paramamosain). Pooled cDNAs of four tissue types from twelve wild individuals were sequenced using the Roche 454 FLX platform. Analysis performed included de novo assembly of transcriptome sequences, f...

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Veröffentlicht in:	PloS one 2014-07, Vol.9 (7), p.e102668-e102668
Hauptverfasser:	Ma, Hongyu, Ma, Chunyan, Li, Shujuan, Jiang, Wei, Li, Xincang, Liu, Yuexing, Ma, Lingbo
Format:	Artikel
Sprache:	eng
Schlagworte:	Analysis Animals Annotations Aquaculture Arthropod Proteins - genetics Assembly Bioinformatics Biological activity Biology and Life Sciences Brachyura - genetics Breeding Chromosomes Crabs Crustaceans Deoxyribonucleic acid DNA Encyclopedias Exploitation Fish Fishery sciences Gene expression Gene Expression Profiling Gene Library Gene mapping Gene Ontology Genetic diversity Genetic markers Genomes Genomics High-Throughput Nucleotide Sequencing - methods Laboratories Microsatellite Repeats - genetics Microsatellites Molecular Sequence Annotation Mud Polymorphism, Single Nucleotide Population Population genetics Proteins Scylla Scylla paramamosain Signal Transduction - genetics Single nucleotide polymorphisms Single-nucleotide polymorphism Tissues
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