Mechanisms of side branching and tip splitting in a model of branching morphogenesis
Recent experimental work in lung morphogenesis has described an elegant pattern of branching phenomena. Two primary forms of branching have been identified: side branching and tip splitting. In our previous study of lung branching morphogenesis, we used a 4 variable partial differential equation (PD...
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description | Recent experimental work in lung morphogenesis has described an elegant pattern of branching phenomena. Two primary forms of branching have been identified: side branching and tip splitting. In our previous study of lung branching morphogenesis, we used a 4 variable partial differential equation (PDE), due to Meinhardt, as our mathematical model to describe the reaction and diffusion of morphogens creating those branched patterns. By altering key parameters in the model, we were able to reproduce all the branching styles and the switch between branching modes. Here, we attempt to explain the branching phenomena described above, as growing out of two fundamental instabilities, one in the longitudinal (growth) direction and the other in the transverse direction. We begin by decoupling the original branching process into two semi-independent sub-processes, 1) a classic activator/inhibitor system along the growing stalk, and 2) the spatial growth of the stalk. We then reduced the full branching model into an activator/inhibitor model that embeds growth of the stalk as a controllable parameter, to explore the mechanisms that determine different branching patterns. We found that, in this model, 1) side branching results from a pattern-formation instability of the activator/inhibitor subsystem in the longitudinal direction. This instability is far from equilibrium, requiring a large inhomogeneity in the initial conditions. It successively creates periodic activator peaks along the growing stalk, each of which later on migrates out and forms a side branch; 2) tip splitting is due to a Turing-style instability along the transversal direction, that creates the spatial splitting of the activator peak into 2 simultaneously-formed peaks at the growing tip, the occurrence of which requires the widening of the growing stalk. Tip splitting is abolished when transversal stalk widening is prevented; 3) when both instabilities are satisfied, tip bifurcation occurs together with side branching. |
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Two primary forms of branching have been identified: side branching and tip splitting. In our previous study of lung branching morphogenesis, we used a 4 variable partial differential equation (PDE), due to Meinhardt, as our mathematical model to describe the reaction and diffusion of morphogens creating those branched patterns. By altering key parameters in the model, we were able to reproduce all the branching styles and the switch between branching modes. Here, we attempt to explain the branching phenomena described above, as growing out of two fundamental instabilities, one in the longitudinal (growth) direction and the other in the transverse direction. We begin by decoupling the original branching process into two semi-independent sub-processes, 1) a classic activator/inhibitor system along the growing stalk, and 2) the spatial growth of the stalk. We then reduced the full branching model into an activator/inhibitor model that embeds growth of the stalk as a controllable parameter, to explore the mechanisms that determine different branching patterns. We found that, in this model, 1) side branching results from a pattern-formation instability of the activator/inhibitor subsystem in the longitudinal direction. This instability is far from equilibrium, requiring a large inhomogeneity in the initial conditions. It successively creates periodic activator peaks along the growing stalk, each of which later on migrates out and forms a side branch; 2) tip splitting is due to a Turing-style instability along the transversal direction, that creates the spatial splitting of the activator peak into 2 simultaneously-formed peaks at the growing tip, the occurrence of which requires the widening of the growing stalk. Tip splitting is abolished when transversal stalk widening is prevented; 3) when both instabilities are satisfied, tip bifurcation occurs together with side branching.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0102718</identifier><identifier>PMID: 25050616</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Animals ; Bifurcations ; Biology ; Biology and Life Sciences ; Branching ; Branching (mathematics) ; Computer Simulation ; Decoupling ; Gene expression ; Humans ; Inhibitors ; Inhomogeneity ; Initial conditions ; Instability ; Laboratories ; Lung - growth & development ; Lungs ; Markov processes ; Mathematical models ; Models, Biological ; Morphogenesis ; Parameters ; Partial differential equations ; Physical Sciences ; Robotics ; Splitting ; Stability ; Styles ; Widening</subject><ispartof>PloS one, 2014-07, Vol.9 (7), p.e102718-e102718</ispartof><rights>COPYRIGHT 2014 Public Library of Science</rights><rights>2014 Guo et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2014 Guo et al 2014 Guo et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c758t-71ca52dd32ef54cb108ad0691da91fb0a00423a21c5a2e2136e420463a9261733</citedby><cites>FETCH-LOGICAL-c758t-71ca52dd32ef54cb108ad0691da91fb0a00423a21c5a2e2136e420463a9261733</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4106868/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4106868/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79343,79344</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25050616$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>MacArthur, Ben D.</contributor><creatorcontrib>Guo, Yina</creatorcontrib><creatorcontrib>Sun, Mingzhu</creatorcontrib><creatorcontrib>Garfinkel, Alan</creatorcontrib><creatorcontrib>Zhao, Xin</creatorcontrib><title>Mechanisms of side branching and tip splitting in a model of branching morphogenesis</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Recent experimental work in lung morphogenesis has described an elegant pattern of branching phenomena. Two primary forms of branching have been identified: side branching and tip splitting. In our previous study of lung branching morphogenesis, we used a 4 variable partial differential equation (PDE), due to Meinhardt, as our mathematical model to describe the reaction and diffusion of morphogens creating those branched patterns. By altering key parameters in the model, we were able to reproduce all the branching styles and the switch between branching modes. Here, we attempt to explain the branching phenomena described above, as growing out of two fundamental instabilities, one in the longitudinal (growth) direction and the other in the transverse direction. We begin by decoupling the original branching process into two semi-independent sub-processes, 1) a classic activator/inhibitor system along the growing stalk, and 2) the spatial growth of the stalk. We then reduced the full branching model into an activator/inhibitor model that embeds growth of the stalk as a controllable parameter, to explore the mechanisms that determine different branching patterns. We found that, in this model, 1) side branching results from a pattern-formation instability of the activator/inhibitor subsystem in the longitudinal direction. This instability is far from equilibrium, requiring a large inhomogeneity in the initial conditions. It successively creates periodic activator peaks along the growing stalk, each of which later on migrates out and forms a side branch; 2) tip splitting is due to a Turing-style instability along the transversal direction, that creates the spatial splitting of the activator peak into 2 simultaneously-formed peaks at the growing tip, the occurrence of which requires the widening of the growing stalk. Tip splitting is abolished when transversal stalk widening is prevented; 3) when both instabilities are satisfied, tip bifurcation occurs together with side branching.</description><subject>Animals</subject><subject>Bifurcations</subject><subject>Biology</subject><subject>Biology and Life Sciences</subject><subject>Branching</subject><subject>Branching (mathematics)</subject><subject>Computer Simulation</subject><subject>Decoupling</subject><subject>Gene expression</subject><subject>Humans</subject><subject>Inhibitors</subject><subject>Inhomogeneity</subject><subject>Initial conditions</subject><subject>Instability</subject><subject>Laboratories</subject><subject>Lung - growth & development</subject><subject>Lungs</subject><subject>Markov processes</subject><subject>Mathematical models</subject><subject>Models, Biological</subject><subject>Morphogenesis</subject><subject>Parameters</subject><subject>Partial differential equations</subject><subject>Physical Sciences</subject><subject>Robotics</subject><subject>Splitting</subject><subject>Stability</subject><subject>Styles</subject><subject>Widening</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNqNkl2L1DAUhoso7of-A9GCsOjFjPlokvZGWBY_BlYWdPU2nCZpm6FNuk0r-u_N7HTXqeyF5CLh5DnvyTl5k-QFRmtMBX639dPgoF333pk1wogInD9KjnFByYoTRB8fnI-SkxC2CDGac_40OSIMMcQxP06uvxjVgLOhC6mv0mC1ScsBnGqsq1NwOh1tn4a-teO4i1iXQtp5bdod_pfs_NA3vjbOBBueJU8qaIN5Pu-nyfePH64vPq8urz5tLs4vV0qwfFwJrIARrSkxFctUiVEOGvECayhwVSJAKCMUCFYMiCGYcpMRlHEKBeFYUHqavNrr9q0Pch5IkJhlghccZSwSmz2hPWxlP9gOht_Sg5W3AT_UEobRqtZIzjRDmpQl0mWGuMjjtIRCmgEtBGE4ar2fq01lZ7QybhygXYgub5xtZO1_ygwjnvM8CryZBQZ_M5kwys4GZdoWnPHT7btzTgkSJKKv_0Ef7m6maogNWFf5WFftROV5hnNMuBAoUusHqLi06ayK7qlsjC8S3i4SIjOaX2MNUwhy8-3r_7NXP5bs2QHbGGjHJvh2Gq13YQlme1ANPoTBVPdDxkjuzH83Dbkzv5zNH9NeHn7QfdKd2-kfqkv8xg</recordid><startdate>20140722</startdate><enddate>20140722</enddate><creator>Guo, Yina</creator><creator>Sun, Mingzhu</creator><creator>Garfinkel, Alan</creator><creator>Zhao, Xin</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20140722</creationdate><title>Mechanisms of side branching and tip splitting in a model of branching morphogenesis</title><author>Guo, Yina ; Sun, Mingzhu ; Garfinkel, Alan ; Zhao, Xin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c758t-71ca52dd32ef54cb108ad0691da91fb0a00423a21c5a2e2136e420463a9261733</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Animals</topic><topic>Bifurcations</topic><topic>Biology</topic><topic>Biology and Life Sciences</topic><topic>Branching</topic><topic>Branching (mathematics)</topic><topic>Computer Simulation</topic><topic>Decoupling</topic><topic>Gene expression</topic><topic>Humans</topic><topic>Inhibitors</topic><topic>Inhomogeneity</topic><topic>Initial conditions</topic><topic>Instability</topic><topic>Laboratories</topic><topic>Lung - growth & development</topic><topic>Lungs</topic><topic>Markov processes</topic><topic>Mathematical models</topic><topic>Models, Biological</topic><topic>Morphogenesis</topic><topic>Parameters</topic><topic>Partial differential equations</topic><topic>Physical Sciences</topic><topic>Robotics</topic><topic>Splitting</topic><topic>Stability</topic><topic>Styles</topic><topic>Widening</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Guo, Yina</creatorcontrib><creatorcontrib>Sun, Mingzhu</creatorcontrib><creatorcontrib>Garfinkel, Alan</creatorcontrib><creatorcontrib>Zhao, Xin</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Opposing Viewpoints in Context (Gale)</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Proquest Nursing & Allied Health Source</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Meteorological & Geoastrophysical Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Materials Science Database</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>Meteorological & Geoastrophysical Abstracts - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Guo, Yina</au><au>Sun, Mingzhu</au><au>Garfinkel, Alan</au><au>Zhao, Xin</au><au>MacArthur, Ben D.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mechanisms of side branching and tip splitting in a model of branching morphogenesis</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2014-07-22</date><risdate>2014</risdate><volume>9</volume><issue>7</issue><spage>e102718</spage><epage>e102718</epage><pages>e102718-e102718</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Recent experimental work in lung morphogenesis has described an elegant pattern of branching phenomena. Two primary forms of branching have been identified: side branching and tip splitting. In our previous study of lung branching morphogenesis, we used a 4 variable partial differential equation (PDE), due to Meinhardt, as our mathematical model to describe the reaction and diffusion of morphogens creating those branched patterns. By altering key parameters in the model, we were able to reproduce all the branching styles and the switch between branching modes. Here, we attempt to explain the branching phenomena described above, as growing out of two fundamental instabilities, one in the longitudinal (growth) direction and the other in the transverse direction. We begin by decoupling the original branching process into two semi-independent sub-processes, 1) a classic activator/inhibitor system along the growing stalk, and 2) the spatial growth of the stalk. We then reduced the full branching model into an activator/inhibitor model that embeds growth of the stalk as a controllable parameter, to explore the mechanisms that determine different branching patterns. We found that, in this model, 1) side branching results from a pattern-formation instability of the activator/inhibitor subsystem in the longitudinal direction. This instability is far from equilibrium, requiring a large inhomogeneity in the initial conditions. It successively creates periodic activator peaks along the growing stalk, each of which later on migrates out and forms a side branch; 2) tip splitting is due to a Turing-style instability along the transversal direction, that creates the spatial splitting of the activator peak into 2 simultaneously-formed peaks at the growing tip, the occurrence of which requires the widening of the growing stalk. Tip splitting is abolished when transversal stalk widening is prevented; 3) when both instabilities are satisfied, tip bifurcation occurs together with side branching.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>25050616</pmid><doi>10.1371/journal.pone.0102718</doi><oa>free_for_read</oa></addata></record> |
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subjects | Animals Bifurcations Biology Biology and Life Sciences Branching Branching (mathematics) Computer Simulation Decoupling Gene expression Humans Inhibitors Inhomogeneity Initial conditions Instability Laboratories Lung - growth & development Lungs Markov processes Mathematical models Models, Biological Morphogenesis Parameters Partial differential equations Physical Sciences Robotics Splitting Stability Styles Widening |
title | Mechanisms of side branching and tip splitting in a model of branching morphogenesis |
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