Cervical cancer precursors and hormonal contraceptive use in HIV-positive women: application of a causal model and semi-parametric estimation methods
To demonstrate the application of causal inference methods to observational data in the obstetrics and gynecology field, particularly causal modeling and semi-parametric estimation. Human immunodeficiency virus (HIV)-positive women are at increased risk for cervical cancer and its treatable precurso...
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description | To demonstrate the application of causal inference methods to observational data in the obstetrics and gynecology field, particularly causal modeling and semi-parametric estimation.
Human immunodeficiency virus (HIV)-positive women are at increased risk for cervical cancer and its treatable precursors. Determining whether potential risk factors such as hormonal contraception are true causes is critical for informing public health strategies as longevity increases among HIV-positive women in developing countries.
We developed a causal model of the factors related to combined oral contraceptive (COC) use and cervical intraepithelial neoplasia 2 or greater (CIN2+) and modified the model to fit the observed data, drawn from women in a cervical cancer screening program at HIV clinics in Kenya. Assumptions required for substantiation of a causal relationship were assessed. We estimated the population-level association using semi-parametric methods: g-computation, inverse probability of treatment weighting, and targeted maximum likelihood estimation.
We identified 2 plausible causal paths from COC use to CIN2+: via HPV infection and via increased disease progression. Study data enabled estimation of the latter only with strong assumptions of no unmeasured confounding. Of 2,519 women under 50 screened per protocol, 219 (8.7%) were diagnosed with CIN2+. Marginal modeling suggested a 2.9% (95% confidence interval 0.1%, 6.9%) increase in prevalence of CIN2+ if all women under 50 were exposed to COC; the significance of this association was sensitive to method of estimation and exposure misclassification.
Use of causal modeling enabled clear representation of the causal relationship of interest and the assumptions required to estimate that relationship from the observed data. Semi-parametric estimation methods provided flexibility and reduced reliance on correct model form. Although selected results suggest an increased prevalence of CIN2+ associated with COC, evidence is insufficient to conclude causality. Priority areas for future studies to better satisfy causal criteria are identified. |
doi_str_mv | 10.1371/journal.pone.0101090 |
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Human immunodeficiency virus (HIV)-positive women are at increased risk for cervical cancer and its treatable precursors. Determining whether potential risk factors such as hormonal contraception are true causes is critical for informing public health strategies as longevity increases among HIV-positive women in developing countries.
We developed a causal model of the factors related to combined oral contraceptive (COC) use and cervical intraepithelial neoplasia 2 or greater (CIN2+) and modified the model to fit the observed data, drawn from women in a cervical cancer screening program at HIV clinics in Kenya. Assumptions required for substantiation of a causal relationship were assessed. We estimated the population-level association using semi-parametric methods: g-computation, inverse probability of treatment weighting, and targeted maximum likelihood estimation.
We identified 2 plausible causal paths from COC use to CIN2+: via HPV infection and via increased disease progression. Study data enabled estimation of the latter only with strong assumptions of no unmeasured confounding. Of 2,519 women under 50 screened per protocol, 219 (8.7%) were diagnosed with CIN2+. Marginal modeling suggested a 2.9% (95% confidence interval 0.1%, 6.9%) increase in prevalence of CIN2+ if all women under 50 were exposed to COC; the significance of this association was sensitive to method of estimation and exposure misclassification.
Use of causal modeling enabled clear representation of the causal relationship of interest and the assumptions required to estimate that relationship from the observed data. Semi-parametric estimation methods provided flexibility and reduced reliance on correct model form. Although selected results suggest an increased prevalence of CIN2+ associated with COC, evidence is insufficient to conclude causality. Priority areas for future studies to better satisfy causal criteria are identified.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0101090</identifier><identifier>PMID: 24979709</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Acquired immune deficiency syndrome ; AIDS ; Antiretroviral drugs ; Cancer ; Cancer screening ; Cervical cancer ; Cervix ; Confidence intervals ; Contraception ; Contraceptives, Oral, Hormonal - adverse effects ; Data processing ; Developing countries ; Female ; Gynecology ; Health aspects ; Health risk assessment ; Health risks ; HIV ; HIV patients ; HIV Seropositivity - complications ; Human immunodeficiency virus ; Human papillomavirus ; Humans ; Incidence ; Kenya - epidemiology ; LDCs ; Maximum likelihood estimation ; Medicine and health sciences ; Methods ; Models, Statistical ; Obstetrics ; Oral contraceptives ; Parameter estimation ; Physical Sciences ; Precursors ; Probabilistic methods ; Public health ; Research and Analysis Methods ; Risk analysis ; Risk factors ; Statistical analysis ; Uterine Cervical Neoplasms - epidemiology ; Uterine Cervical Neoplasms - etiology ; Viruses ; Womens health</subject><ispartof>PloS one, 2014-06, Vol.9 (6), p.e101090</ispartof><rights>COPYRIGHT 2014 Public Library of Science</rights><rights>2014 Leslie et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2014 Leslie et al 2014 Leslie et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-e6ef6e36ea2b4680575f9ac24b05398c00624b952ebf4555ce43ff80f6b5c0f33</citedby><cites>FETCH-LOGICAL-c692t-e6ef6e36ea2b4680575f9ac24b05398c00624b952ebf4555ce43ff80f6b5c0f33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076246/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076246/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2102,2928,23866,27924,27925,53791,53793,79600,79601</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24979709$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Lopes, Marcia Edilaine</contributor><creatorcontrib>Leslie, Hannah H</creatorcontrib><creatorcontrib>Karasek, Deborah A</creatorcontrib><creatorcontrib>Harris, Laura F</creatorcontrib><creatorcontrib>Chang, Emily</creatorcontrib><creatorcontrib>Abdulrahim, Naila</creatorcontrib><creatorcontrib>Maloba, May</creatorcontrib><creatorcontrib>Huchko, Megan J</creatorcontrib><title>Cervical cancer precursors and hormonal contraceptive use in HIV-positive women: application of a causal model and semi-parametric estimation methods</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>To demonstrate the application of causal inference methods to observational data in the obstetrics and gynecology field, particularly causal modeling and semi-parametric estimation.
Human immunodeficiency virus (HIV)-positive women are at increased risk for cervical cancer and its treatable precursors. Determining whether potential risk factors such as hormonal contraception are true causes is critical for informing public health strategies as longevity increases among HIV-positive women in developing countries.
We developed a causal model of the factors related to combined oral contraceptive (COC) use and cervical intraepithelial neoplasia 2 or greater (CIN2+) and modified the model to fit the observed data, drawn from women in a cervical cancer screening program at HIV clinics in Kenya. Assumptions required for substantiation of a causal relationship were assessed. We estimated the population-level association using semi-parametric methods: g-computation, inverse probability of treatment weighting, and targeted maximum likelihood estimation.
We identified 2 plausible causal paths from COC use to CIN2+: via HPV infection and via increased disease progression. Study data enabled estimation of the latter only with strong assumptions of no unmeasured confounding. Of 2,519 women under 50 screened per protocol, 219 (8.7%) were diagnosed with CIN2+. Marginal modeling suggested a 2.9% (95% confidence interval 0.1%, 6.9%) increase in prevalence of CIN2+ if all women under 50 were exposed to COC; the significance of this association was sensitive to method of estimation and exposure misclassification.
Use of causal modeling enabled clear representation of the causal relationship of interest and the assumptions required to estimate that relationship from the observed data. Semi-parametric estimation methods provided flexibility and reduced reliance on correct model form. Although selected results suggest an increased prevalence of CIN2+ associated with COC, evidence is insufficient to conclude causality. Priority areas for future studies to better satisfy causal criteria are identified.</description><subject>Acquired immune deficiency syndrome</subject><subject>AIDS</subject><subject>Antiretroviral drugs</subject><subject>Cancer</subject><subject>Cancer screening</subject><subject>Cervical cancer</subject><subject>Cervix</subject><subject>Confidence intervals</subject><subject>Contraception</subject><subject>Contraceptives, Oral, Hormonal - adverse effects</subject><subject>Data processing</subject><subject>Developing countries</subject><subject>Female</subject><subject>Gynecology</subject><subject>Health aspects</subject><subject>Health risk assessment</subject><subject>Health risks</subject><subject>HIV</subject><subject>HIV patients</subject><subject>HIV Seropositivity - complications</subject><subject>Human immunodeficiency virus</subject><subject>Human papillomavirus</subject><subject>Humans</subject><subject>Incidence</subject><subject>Kenya - epidemiology</subject><subject>LDCs</subject><subject>Maximum likelihood estimation</subject><subject>Medicine and health sciences</subject><subject>Methods</subject><subject>Models, Statistical</subject><subject>Obstetrics</subject><subject>Oral contraceptives</subject><subject>Parameter estimation</subject><subject>Physical Sciences</subject><subject>Precursors</subject><subject>Probabilistic methods</subject><subject>Public health</subject><subject>Research and Analysis Methods</subject><subject>Risk analysis</subject><subject>Risk factors</subject><subject>Statistical analysis</subject><subject>Uterine Cervical Neoplasms - epidemiology</subject><subject>Uterine Cervical Neoplasms - etiology</subject><subject>Viruses</subject><subject>Womens health</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>DOA</sourceid><recordid>eNqNk9-L1DAQx4so3nn6H4gWBNGHrmmbphsfhGNRb-HgwB_3GtJ0spsjbWrSrvqH-P863e0dW7kHmYeGmc98m5nMRNHzlCzSvEzf3bjBt9IuOtfCgqRonDyITlOeZwnLSP7w6HwSPQnhhpAiXzL2ODrJKC95Sfhp9GcFfmeUtLGSrQIfdx7U4IPzIZZtHW-db1w7hl3be6mg680O4iFAbNr4Yn2ddC6Yve-na6B9H8uusyjYG9fGTscShYeAAo2rwe41AzQm6aSXDfTeqBhCb5pDAnq2rg5Po0da2gDPpu9Z9P3Tx2-ri-Ty6vN6dX6ZKMazPgEGmkHOQGYVZUtSlIXmUmW0wkr5UhHC8MyLDCpNi6JQQHOtl0SzqlBE5_lZ9PKg21kXxNTRINKCpiVnNF8isT4QtZM3ovN4Uf9bOGnE3uH8RkjfG2VBFEzRrEopGtBa8irlpIJaFVRXMk9r1Pow_W2oGgzA2FE7E51HWrMVG7cTlJRYCEOBN5OAdz8GbJtoTFBgrWzBDft7ZznJOMsQffUPen91E7WRWIBptRvfeBQV5wildFmSEqnFPRRajQ-JcwHaoH-W8HaWMM4O_Oo3OAhBrL9--X_26nrOvj5ityBtvw3ODuPohDlID6DyLgQP-q7JKRHj9tx2Q4zbI6btwbQXxw90l3S7LvlfZAwXlQ</recordid><startdate>20140630</startdate><enddate>20140630</enddate><creator>Leslie, Hannah H</creator><creator>Karasek, Deborah A</creator><creator>Harris, Laura F</creator><creator>Chang, Emily</creator><creator>Abdulrahim, Naila</creator><creator>Maloba, May</creator><creator>Huchko, Megan J</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20140630</creationdate><title>Cervical cancer precursors and hormonal contraceptive use in HIV-positive women: application of a causal model and semi-parametric estimation methods</title><author>Leslie, Hannah H ; Karasek, Deborah A ; Harris, Laura F ; Chang, Emily ; Abdulrahim, Naila ; Maloba, May ; Huchko, Megan J</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c692t-e6ef6e36ea2b4680575f9ac24b05398c00624b952ebf4555ce43ff80f6b5c0f33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Acquired immune deficiency syndrome</topic><topic>AIDS</topic><topic>Antiretroviral drugs</topic><topic>Cancer</topic><topic>Cancer screening</topic><topic>Cervical cancer</topic><topic>Cervix</topic><topic>Confidence intervals</topic><topic>Contraception</topic><topic>Contraceptives, Oral, Hormonal - adverse effects</topic><topic>Data processing</topic><topic>Developing countries</topic><topic>Female</topic><topic>Gynecology</topic><topic>Health aspects</topic><topic>Health risk assessment</topic><topic>Health risks</topic><topic>HIV</topic><topic>HIV patients</topic><topic>HIV Seropositivity - complications</topic><topic>Human immunodeficiency virus</topic><topic>Human papillomavirus</topic><topic>Humans</topic><topic>Incidence</topic><topic>Kenya - epidemiology</topic><topic>LDCs</topic><topic>Maximum likelihood estimation</topic><topic>Medicine and health sciences</topic><topic>Methods</topic><topic>Models, Statistical</topic><topic>Obstetrics</topic><topic>Oral contraceptives</topic><topic>Parameter estimation</topic><topic>Physical Sciences</topic><topic>Precursors</topic><topic>Probabilistic methods</topic><topic>Public health</topic><topic>Research and Analysis Methods</topic><topic>Risk analysis</topic><topic>Risk factors</topic><topic>Statistical analysis</topic><topic>Uterine Cervical Neoplasms - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Leslie, Hannah H</au><au>Karasek, Deborah A</au><au>Harris, Laura F</au><au>Chang, Emily</au><au>Abdulrahim, Naila</au><au>Maloba, May</au><au>Huchko, Megan J</au><au>Lopes, Marcia Edilaine</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Cervical cancer precursors and hormonal contraceptive use in HIV-positive women: application of a causal model and semi-parametric estimation methods</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2014-06-30</date><risdate>2014</risdate><volume>9</volume><issue>6</issue><spage>e101090</spage><pages>e101090-</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>To demonstrate the application of causal inference methods to observational data in the obstetrics and gynecology field, particularly causal modeling and semi-parametric estimation.
Human immunodeficiency virus (HIV)-positive women are at increased risk for cervical cancer and its treatable precursors. Determining whether potential risk factors such as hormonal contraception are true causes is critical for informing public health strategies as longevity increases among HIV-positive women in developing countries.
We developed a causal model of the factors related to combined oral contraceptive (COC) use and cervical intraepithelial neoplasia 2 or greater (CIN2+) and modified the model to fit the observed data, drawn from women in a cervical cancer screening program at HIV clinics in Kenya. Assumptions required for substantiation of a causal relationship were assessed. We estimated the population-level association using semi-parametric methods: g-computation, inverse probability of treatment weighting, and targeted maximum likelihood estimation.
We identified 2 plausible causal paths from COC use to CIN2+: via HPV infection and via increased disease progression. Study data enabled estimation of the latter only with strong assumptions of no unmeasured confounding. Of 2,519 women under 50 screened per protocol, 219 (8.7%) were diagnosed with CIN2+. Marginal modeling suggested a 2.9% (95% confidence interval 0.1%, 6.9%) increase in prevalence of CIN2+ if all women under 50 were exposed to COC; the significance of this association was sensitive to method of estimation and exposure misclassification.
Use of causal modeling enabled clear representation of the causal relationship of interest and the assumptions required to estimate that relationship from the observed data. Semi-parametric estimation methods provided flexibility and reduced reliance on correct model form. Although selected results suggest an increased prevalence of CIN2+ associated with COC, evidence is insufficient to conclude causality. Priority areas for future studies to better satisfy causal criteria are identified.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>24979709</pmid><doi>10.1371/journal.pone.0101090</doi><oa>free_for_read</oa></addata></record> |
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source | PubMed Central Free; MEDLINE; DOAJ Directory of Open Access Journals; Public Library of Science (PLoS) Journals Open Access; EZB-FREE-00999 freely available EZB journals; Free Full-Text Journals in Chemistry |
subjects | Acquired immune deficiency syndrome AIDS Antiretroviral drugs Cancer Cancer screening Cervical cancer Cervix Confidence intervals Contraception Contraceptives, Oral, Hormonal - adverse effects Data processing Developing countries Female Gynecology Health aspects Health risk assessment Health risks HIV HIV patients HIV Seropositivity - complications Human immunodeficiency virus Human papillomavirus Humans Incidence Kenya - epidemiology LDCs Maximum likelihood estimation Medicine and health sciences Methods Models, Statistical Obstetrics Oral contraceptives Parameter estimation Physical Sciences Precursors Probabilistic methods Public health Research and Analysis Methods Risk analysis Risk factors Statistical analysis Uterine Cervical Neoplasms - epidemiology Uterine Cervical Neoplasms - etiology Viruses Womens health |
title | Cervical cancer precursors and hormonal contraceptive use in HIV-positive women: application of a causal model and semi-parametric estimation methods |
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