Open source software to control Bioflo bioreactors
Bioreactors are designed to support highly controlled environments for growth of tissues, cell cultures or microbial cultures. A variety of bioreactors are commercially available, often including sophisticated software to enhance the functionality of the bioreactor. However, experiments that the bio...
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description | Bioreactors are designed to support highly controlled environments for growth of tissues, cell cultures or microbial cultures. A variety of bioreactors are commercially available, often including sophisticated software to enhance the functionality of the bioreactor. However, experiments that the bioreactor hardware can support, but that were not envisioned during the software design cannot be performed without developing custom software. In addition, support for third party or custom designed auxiliary hardware is often sparse or absent. This work presents flexible open source freeware for the control of bioreactors of the Bioflo product family. The functionality of the software includes setpoint control, data logging, and protocol execution. Auxiliary hardware can be easily integrated and controlled through an integrated plugin interface without altering existing software. Simple experimental protocols can be entered as a CSV scripting file, and a Python-based protocol execution model is included for more demanding conditional experimental control. The software was designed to be a more flexible and free open source alternative to the commercially available solution. The source code and various auxiliary hardware plugins are publicly available for download from https://github.com/LibourelLab/BiofloSoftware. In addition to the source code, the software was compiled and packaged as a self-installing file for 32 and 64 bit windows operating systems. The compiled software will be able to control a Bioflo system, and will not require the installation of LabVIEW. |
doi_str_mv | 10.1371/journal.pone.0092108 |
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A variety of bioreactors are commercially available, often including sophisticated software to enhance the functionality of the bioreactor. However, experiments that the bioreactor hardware can support, but that were not envisioned during the software design cannot be performed without developing custom software. In addition, support for third party or custom designed auxiliary hardware is often sparse or absent. This work presents flexible open source freeware for the control of bioreactors of the Bioflo product family. The functionality of the software includes setpoint control, data logging, and protocol execution. Auxiliary hardware can be easily integrated and controlled through an integrated plugin interface without altering existing software. Simple experimental protocols can be entered as a CSV scripting file, and a Python-based protocol execution model is included for more demanding conditional experimental control. The software was designed to be a more flexible and free open source alternative to the commercially available solution. The source code and various auxiliary hardware plugins are publicly available for download from https://github.com/LibourelLab/BiofloSoftware. In addition to the source code, the software was compiled and packaged as a self-installing file for 32 and 64 bit windows operating systems. The compiled software will be able to control a Bioflo system, and will not require the installation of LabVIEW.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0092108</identifier><identifier>PMID: 24667828</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Access control ; Automation ; Backup software ; Bioengineering ; Biology and Life Sciences ; Bioreactors ; Biotechnology ; Cell culture ; Communication ; Computer and Information Sciences ; Computer programming ; Computer programs ; Control algorithms ; Customization ; Data logging ; Downloading ; Engineering and Technology ; Fermentation ; Freeware ; Hardware ; Logging ; Microorganisms ; Open source software ; Operating systems ; Personal computers ; Programming Languages ; Protocol (computers) ; Researchers ; Sensors ; Software ; Software Design ; Source code ; Stability ; Tissues</subject><ispartof>PloS one, 2014-03, Vol.9 (3), p.e92108-e92108</ispartof><rights>COPYRIGHT 2014 Public Library of Science</rights><rights>2014 Libourel, Burdge. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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A variety of bioreactors are commercially available, often including sophisticated software to enhance the functionality of the bioreactor. However, experiments that the bioreactor hardware can support, but that were not envisioned during the software design cannot be performed without developing custom software. In addition, support for third party or custom designed auxiliary hardware is often sparse or absent. This work presents flexible open source freeware for the control of bioreactors of the Bioflo product family. The functionality of the software includes setpoint control, data logging, and protocol execution. Auxiliary hardware can be easily integrated and controlled through an integrated plugin interface without altering existing software. Simple experimental protocols can be entered as a CSV scripting file, and a Python-based protocol execution model is included for more demanding conditional experimental control. 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The compiled software will be able to control a Bioflo system, and will not require the installation of LabVIEW.</description><subject>Access control</subject><subject>Automation</subject><subject>Backup software</subject><subject>Bioengineering</subject><subject>Biology and Life Sciences</subject><subject>Bioreactors</subject><subject>Biotechnology</subject><subject>Cell culture</subject><subject>Communication</subject><subject>Computer and Information Sciences</subject><subject>Computer programming</subject><subject>Computer programs</subject><subject>Control algorithms</subject><subject>Customization</subject><subject>Data logging</subject><subject>Downloading</subject><subject>Engineering and Technology</subject><subject>Fermentation</subject><subject>Freeware</subject><subject>Hardware</subject><subject>Logging</subject><subject>Microorganisms</subject><subject>Open source software</subject><subject>Operating systems</subject><subject>Personal 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subjects | Access control Automation Backup software Bioengineering Biology and Life Sciences Bioreactors Biotechnology Cell culture Communication Computer and Information Sciences Computer programming Computer programs Control algorithms Customization Data logging Downloading Engineering and Technology Fermentation Freeware Hardware Logging Microorganisms Open source software Operating systems Personal computers Programming Languages Protocol (computers) Researchers Sensors Software Software Design Source code Stability Tissues |
title | Open source software to control Bioflo bioreactors |
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