Ecological adaption analysis of the cotton aphid (Aphis gossypii) in different phenotypes by transcriptome comparison

The cotton aphid, Aphis gossypii Glover, is a destructive insect pest worldwide; it directly or indirectly damages (virus transmission) 300 species of host plants. Knowledge of their ecologically adaptive mechanisms at the molecular level may provide an essential and urgent method to effectively con...

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Veröffentlicht in:PloS one 2013-12, Vol.8 (12), p.e83180-e83180
Hauptverfasser: Li, Zhao-Qun, Zhang, Shuai, Luo, Jun-Yu, Wang, Chun-Yi, Lv, Li-Min, Dong, Shuang-Lin, Cui, Jin-Jie
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Zhang, Shuai
Luo, Jun-Yu
Wang, Chun-Yi
Lv, Li-Min
Dong, Shuang-Lin
Cui, Jin-Jie
description The cotton aphid, Aphis gossypii Glover, is a destructive insect pest worldwide; it directly or indirectly damages (virus transmission) 300 species of host plants. Knowledge of their ecologically adaptive mechanisms at the molecular level may provide an essential and urgent method to effectively control this pest. However, no transcriptome information is available for the cotton aphid and sequence data are scarce. Therefore, we obtained transcriptome data. To facilitate such a study, two cotton aphid transcriptomes at different growth stages of cotton, seedling and summer, were sequenced. A total of 161,396 and 66,668 contigs were obtained and assembled into 83,671 and 42,438 transcripts, respectively. After combining the raw date for both transcriptomes, the sequences were reassembled into 66,695 transcripts, and 52,160 were annotated based on BLASTX analyses. Comparison of the transcriptomes revealed that summer presented less challenges for the cotton aphids than the seedling stage of cotton. In total, 58 putative heat shock protein genes and 66 candidate cytochrome p450 genes were identified with BLASTX. Our results form a basis for exploring the molecular mechanisms of ecological adaption in the cotton aphid. Our study also provides a baseline for the exploration of abiotic stress responses. In addition, it provides large-scale sequence information for further studies on this species.
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Knowledge of their ecologically adaptive mechanisms at the molecular level may provide an essential and urgent method to effectively control this pest. However, no transcriptome information is available for the cotton aphid and sequence data are scarce. Therefore, we obtained transcriptome data. To facilitate such a study, two cotton aphid transcriptomes at different growth stages of cotton, seedling and summer, were sequenced. A total of 161,396 and 66,668 contigs were obtained and assembled into 83,671 and 42,438 transcripts, respectively. After combining the raw date for both transcriptomes, the sequences were reassembled into 66,695 transcripts, and 52,160 were annotated based on BLASTX analyses. Comparison of the transcriptomes revealed that summer presented less challenges for the cotton aphids than the seedling stage of cotton. In total, 58 putative heat shock protein genes and 66 candidate cytochrome p450 genes were identified with BLASTX. 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it directly or indirectly damages (virus transmission) 300 species of host plants. Knowledge of their ecologically adaptive mechanisms at the molecular level may provide an essential and urgent method to effectively control this pest. However, no transcriptome information is available for the cotton aphid and sequence data are scarce. Therefore, we obtained transcriptome data. To facilitate such a study, two cotton aphid transcriptomes at different growth stages of cotton, seedling and summer, were sequenced. A total of 161,396 and 66,668 contigs were obtained and assembled into 83,671 and 42,438 transcripts, respectively. After combining the raw date for both transcriptomes, the sequences were reassembled into 66,695 transcripts, and 52,160 were annotated based on BLASTX analyses. Comparison of the transcriptomes revealed that summer presented less challenges for the cotton aphids than the seedling stage of cotton. In total, 58 putative heat shock protein genes and 66 candidate cytochrome p450 genes were identified with BLASTX. Our results form a basis for exploring the molecular mechanisms of ecological adaption in the cotton aphid. Our study also provides a baseline for the exploration of abiotic stress responses. In addition, it provides large-scale sequence information for further studies on this species.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>24376660</pmid><doi>10.1371/journal.pone.0083180</doi><oa>free_for_read</oa></addata></record>
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subjects Acids
Adaptation, Physiological - genetics
Analysis
Animals
Aphidoidea
Aphids
Aphids - classification
Aphids - genetics
Aphis gossypii
Biology
Cotton
Crop diseases
Cytochrome
Cytochrome P-450 Enzyme System - classification
Cytochrome P-450 Enzyme System - genetics
Cytochrome P450
Disease transmission
Ecological effects
Ecological monitoring
Ecosystem
Gene expression
Genes
Genetic aspects
Genomes
Gossypium - growth & development
Gossypium - parasitology
Heat shock
Heat shock proteins
Heat-Shock Proteins - classification
Heat-Shock Proteins - genetics
Host plants
Insect pests
Insect Proteins - classification
Insect Proteins - genetics
Insects
Isoenzymes - classification
Isoenzymes - genetics
Laboratories
Metabolism
Molecular modelling
Molecular Sequence Annotation
Pest control
Pests
Phenotype
Phylogeny
Plant viruses
Seedlings
Seedlings - growth & development
Seedlings - parasitology
Studies
Summer
Transcriptome
Viruses
title Ecological adaption analysis of the cotton aphid (Aphis gossypii) in different phenotypes by transcriptome comparison
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