Vitis Phylogenomics: Hybridization Intensities from a SNP Array Outperform Genotype Calls

Understanding relationships among species is a fundamental goal of evolutionary biology. Single nucleotide polymorphisms (SNPs) identified through next generation sequencing and related technologies enable phylogeny reconstruction by providing unprecedented numbers of characters for analysis. One ap...

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Veröffentlicht in:	PloS one 2013-11, Vol.8 (11), p.e78680-e78680
Hauptverfasser:	Miller, Allison J, Matasci, Naim, Schwaninger, Heidi, Aradhya, Mallikarjuna K, Prins, Bernard, Zhong, Gan-Yuan, Simon, Charles, Buckler, Edward S, Myles, Sean, Wang, Ting
Format:	Artikel
Sprache:	eng
Schlagworte:	Agriculture Alleles Analysis Arrays Bias Biological evolution Chromosomes Evolution Evolution, Molecular Evolutionary biology Experiments Gene Frequency Genetic aspects Genetic Markers Genome, Plant Genomes Genotype Genotypes Genotyping Techniques Germplasm Grapes high-throughput nucleotide sequencing Hybridization Hybridization, Genetic Models, Genetic monophyly Oryza Phylogenetics Phylogeny Plant Leaves - genetics Polymorphism Polymorphism, Single Nucleotide Principal Component Analysis Reconstruction Sequence Analysis, DNA Single nucleotide polymorphisms Single-nucleotide polymorphism Species surveys Vitaceae Vitis Vitis - genetics Vitis vinifera
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