Transcriptional activity, chromosomal distribution and expression effects of transposable elements in Coffea genomes

Plant genomes are massively invaded by transposable elements (TEs), many of which are located near host genes and can thus impact gene expression. In flowering plants, TE expression can be activated (de-repressed) under certain stressful conditions, both biotic and abiotic, as well as by genome stre...

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Veröffentlicht in:	PloS one 2013-11, Vol.8 (11), p.e78931-e78931
Hauptverfasser:	Lopes, Fabrício R, Jjingo, Daudi, da Silva, Carlos R M, Andrade, Alan C, Marraccini, Pierre, Teixeira, João B, Carazzolle, Marcelo F, Pereira, Gonçalo A G, Pereira, Luiz Filipe P, Vanzela, André L L, Wang, Lu, Jordan, I King, Carareto, Claudia M A
Format:	Artikel
Sprache:	eng
Schlagworte:	Analysis Bioinformatics Biology Cell culture Chromosomes, Plant - genetics Chromosomes, Plant - metabolism Coffea - genetics Coffea - metabolism Coffea arabica Coffea canephora Coffee Coffee industry Cultivars Deoxyribonucleic acid DNA DNA methylation DNA Transposable Elements - physiology Drought Enzymes Evolution Flowering Gene expression Gene Expression Regulation, Plant - physiology Gene regulation Gene sequencing Gene silencing Genes Genetic aspects Genome, Plant - physiology Genomes Genomics Host plants Hybridization Irrigation mRNA turnover Nonsense-mediated mRNA decay Plant genetics Plants (botany) RNA Species classification Stress Stresses Transcription Transcription (Genetics) Transcription, Genetic - physiology Transposons Triticum
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