The mitochondrial genome of Paramphistomum cervi (Digenea), the first representative for the family Paramphistomidae
We determined the complete mitochondrial DNA (mtDNA) sequence of a fluke, Paramphistomum cervi (Digenea: Paramphistomidae). This genome (14,014 bp) is slightly larger than that of Clonorchis sinensis (13,875 bp), but smaller than those of other digenean species. The mt genome of P. cervi contains 12...
Gespeichert in:
Veröffentlicht in: | PloS one 2013-08, Vol.8 (8), p.e71300-e71300 |
---|---|
Hauptverfasser: | , , , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | e71300 |
---|---|
container_issue | 8 |
container_start_page | e71300 |
container_title | PloS one |
container_volume | 8 |
creator | Yan, Hong-Bin Wang, Xing-Ye Lou, Zhong-Zi Li, Li Blair, David Yin, Hong Cai, Jin-Zhong Dai, Xue-Ling Lei, Meng-Tong Zhu, Xing-Quan Cai, Xue-Peng Jia, Wan-Zhong |
description | We determined the complete mitochondrial DNA (mtDNA) sequence of a fluke, Paramphistomum cervi (Digenea: Paramphistomidae). This genome (14,014 bp) is slightly larger than that of Clonorchis sinensis (13,875 bp), but smaller than those of other digenean species. The mt genome of P. cervi contains 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 2 non-coding regions (NCRs), a complement consistent with those of other digeneans. The arrangement of protein-coding and ribosomal RNA genes in the P. cervi mitochondrial genome is identical to that of other digeneans except for a group of Schistosoma species that exhibit a derived arrangement. The positions of some transfer RNA genes differ. Bayesian phylogenetic analyses, based on concatenated nucleotide sequences and amino-acid sequences of the 12 protein-coding genes, placed P. cervi within the Order Plagiorchiida, but relationships depicted within that order were not quite as expected from previous studies. The complete mtDNA sequence of P. cervi provides important genetic markers for diagnostics, ecological and evolutionary studies of digeneans. |
doi_str_mv | 10.1371/journal.pone.0071300 |
format | Article |
fullrecord | <record><control><sourceid>gale_plos_</sourceid><recordid>TN_cdi_plos_journals_1427238214</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A478172200</galeid><doaj_id>oai_doaj_org_article_018ffc7e7c0f49ebb3af09721826ba6b</doaj_id><sourcerecordid>A478172200</sourcerecordid><originalsourceid>FETCH-LOGICAL-c692t-32786f025d79fa7b65876d7d574d2cda449ea276c6f33d76488524d8bd600de63</originalsourceid><addsrcrecordid>eNqNk11v0zAUhiMEYmPwDxBEQkKbRIs_Eju5QZrGV6VJQzC4tRz7uHWVxMV2KvbvcddsatAuUC4cHT_ve3yOfbLsJUZzTDl-v3aD72U737ge5ghxTBF6lB3jmpIZI4g-Pvg_yp6FsEaopBVjT7MjQusa1QU9zuL1CvLORqdWrtfeyjZfQu86yJ3Jv0kvu83Khui6ocsV-K3NTz_aRIA8e5fHpDXWh5h72HgI0EcZ7TYFnd9vys62NxMfqyU8z54Y2QZ4Ma4n2c_Pn64vvs4ur74sLs4vZ4rVJM4o4RUziJSa10byhpUVZ5rrkheaKC2LogZJOFPMUKo5K6qqJIWuGs0Q0sDoSfZ677tpXRBjw4LABeGEVgQXiVjsCe3kWmy87aS_EU5acRtwfimkj1a1IBCujFEcuEImJW4aKg2qOcEVYY1kTfL6MGYbmg60St3wsp2YTnd6uxJLtxWUlwgVKBmcjgbe_R4gRNHZoKBtZQ9uuD13TXAqkSb0zT_ow9WN1FKmAmxvXMqrdqbivOAV5oSgXdr5A1T6NHRWpddlbIpPBGcTQWIi_IlLOYQgFj--_z979WvKvj1gVyDbuAquHaJ1fZiCxR5U3oXgwdw3GSOxG467bojdcIhxOJLs1eEF3YvupoH-BaAXCj4</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1427238214</pqid></control><display><type>article</type><title>The mitochondrial genome of Paramphistomum cervi (Digenea), the first representative for the family Paramphistomidae</title><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><source>Public Library of Science (PLoS)</source><creator>Yan, Hong-Bin ; Wang, Xing-Ye ; Lou, Zhong-Zi ; Li, Li ; Blair, David ; Yin, Hong ; Cai, Jin-Zhong ; Dai, Xue-Ling ; Lei, Meng-Tong ; Zhu, Xing-Quan ; Cai, Xue-Peng ; Jia, Wan-Zhong</creator><creatorcontrib>Yan, Hong-Bin ; Wang, Xing-Ye ; Lou, Zhong-Zi ; Li, Li ; Blair, David ; Yin, Hong ; Cai, Jin-Zhong ; Dai, Xue-Ling ; Lei, Meng-Tong ; Zhu, Xing-Quan ; Cai, Xue-Peng ; Jia, Wan-Zhong</creatorcontrib><description>We determined the complete mitochondrial DNA (mtDNA) sequence of a fluke, Paramphistomum cervi (Digenea: Paramphistomidae). This genome (14,014 bp) is slightly larger than that of Clonorchis sinensis (13,875 bp), but smaller than those of other digenean species. The mt genome of P. cervi contains 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 2 non-coding regions (NCRs), a complement consistent with those of other digeneans. The arrangement of protein-coding and ribosomal RNA genes in the P. cervi mitochondrial genome is identical to that of other digeneans except for a group of Schistosoma species that exhibit a derived arrangement. The positions of some transfer RNA genes differ. Bayesian phylogenetic analyses, based on concatenated nucleotide sequences and amino-acid sequences of the 12 protein-coding genes, placed P. cervi within the Order Plagiorchiida, but relationships depicted within that order were not quite as expected from previous studies. The complete mtDNA sequence of P. cervi provides important genetic markers for diagnostics, ecological and evolutionary studies of digeneans.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0071300</identifier><identifier>PMID: 23990943</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Agriculture ; Amino acids ; Animal sciences ; Animals ; Base Sequence ; Bayes Theorem ; Bayesian analysis ; Bioinformatics ; Biological evolution ; Biology ; Cestoda ; Clonorchis sinensis ; Completeness ; Deoxyribonucleic acid ; Digenea ; DNA ; DNA Primers ; DNA, Mitochondrial - genetics ; Ecological monitoring ; Gene Order ; Gene sequencing ; Genes ; Genetic Markers ; Genetic Variation ; Genome, Mitochondrial ; Genomes ; Genomics ; Infections ; Laboratories ; Mitochondrial DNA ; Molecular Sequence Data ; Non-coding RNA ; Nucleic Acid Conformation ; Nucleotide sequence ; Open Reading Frames ; Paramphistomatidae - genetics ; Paramphistomum cervi ; Parasites ; Parasitology ; Phylogenetics ; Phylogeny ; Platyhelminthes ; Public health ; Ribonucleic acid ; Ribosomal DNA ; Ribosomal RNA ; RNA ; RNA, Transfer - genetics ; RNA, Untranslated - genetics ; rRNA ; Schistosoma ; Sequence Analysis, Protein ; Transfer RNA ; Trematoda ; Veterinary medicine ; Veterinary Science ; Zoology</subject><ispartof>PloS one, 2013-08, Vol.8 (8), p.e71300-e71300</ispartof><rights>COPYRIGHT 2013 Public Library of Science</rights><rights>2013 Yan et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2013 Yan et al 2013 Yan et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-32786f025d79fa7b65876d7d574d2cda449ea276c6f33d76488524d8bd600de63</citedby><cites>FETCH-LOGICAL-c692t-32786f025d79fa7b65876d7d574d2cda449ea276c6f33d76488524d8bd600de63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3750040/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3750040/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79343,79344</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23990943$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yan, Hong-Bin</creatorcontrib><creatorcontrib>Wang, Xing-Ye</creatorcontrib><creatorcontrib>Lou, Zhong-Zi</creatorcontrib><creatorcontrib>Li, Li</creatorcontrib><creatorcontrib>Blair, David</creatorcontrib><creatorcontrib>Yin, Hong</creatorcontrib><creatorcontrib>Cai, Jin-Zhong</creatorcontrib><creatorcontrib>Dai, Xue-Ling</creatorcontrib><creatorcontrib>Lei, Meng-Tong</creatorcontrib><creatorcontrib>Zhu, Xing-Quan</creatorcontrib><creatorcontrib>Cai, Xue-Peng</creatorcontrib><creatorcontrib>Jia, Wan-Zhong</creatorcontrib><title>The mitochondrial genome of Paramphistomum cervi (Digenea), the first representative for the family Paramphistomidae</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>We determined the complete mitochondrial DNA (mtDNA) sequence of a fluke, Paramphistomum cervi (Digenea: Paramphistomidae). This genome (14,014 bp) is slightly larger than that of Clonorchis sinensis (13,875 bp), but smaller than those of other digenean species. The mt genome of P. cervi contains 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 2 non-coding regions (NCRs), a complement consistent with those of other digeneans. The arrangement of protein-coding and ribosomal RNA genes in the P. cervi mitochondrial genome is identical to that of other digeneans except for a group of Schistosoma species that exhibit a derived arrangement. The positions of some transfer RNA genes differ. Bayesian phylogenetic analyses, based on concatenated nucleotide sequences and amino-acid sequences of the 12 protein-coding genes, placed P. cervi within the Order Plagiorchiida, but relationships depicted within that order were not quite as expected from previous studies. The complete mtDNA sequence of P. cervi provides important genetic markers for diagnostics, ecological and evolutionary studies of digeneans.</description><subject>Agriculture</subject><subject>Amino acids</subject><subject>Animal sciences</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>Bayes Theorem</subject><subject>Bayesian analysis</subject><subject>Bioinformatics</subject><subject>Biological evolution</subject><subject>Biology</subject><subject>Cestoda</subject><subject>Clonorchis sinensis</subject><subject>Completeness</subject><subject>Deoxyribonucleic acid</subject><subject>Digenea</subject><subject>DNA</subject><subject>DNA Primers</subject><subject>DNA, Mitochondrial - genetics</subject><subject>Ecological monitoring</subject><subject>Gene Order</subject><subject>Gene sequencing</subject><subject>Genes</subject><subject>Genetic Markers</subject><subject>Genetic Variation</subject><subject>Genome, Mitochondrial</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Infections</subject><subject>Laboratories</subject><subject>Mitochondrial DNA</subject><subject>Molecular Sequence Data</subject><subject>Non-coding RNA</subject><subject>Nucleic Acid Conformation</subject><subject>Nucleotide sequence</subject><subject>Open Reading Frames</subject><subject>Paramphistomatidae - genetics</subject><subject>Paramphistomum cervi</subject><subject>Parasites</subject><subject>Parasitology</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Platyhelminthes</subject><subject>Public health</subject><subject>Ribonucleic acid</subject><subject>Ribosomal DNA</subject><subject>Ribosomal RNA</subject><subject>RNA</subject><subject>RNA, Transfer - genetics</subject><subject>RNA, Untranslated - genetics</subject><subject>rRNA</subject><subject>Schistosoma</subject><subject>Sequence Analysis, Protein</subject><subject>Transfer RNA</subject><subject>Trematoda</subject><subject>Veterinary medicine</subject><subject>Veterinary Science</subject><subject>Zoology</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNqNk11v0zAUhiMEYmPwDxBEQkKbRIs_Eju5QZrGV6VJQzC4tRz7uHWVxMV2KvbvcddsatAuUC4cHT_ve3yOfbLsJUZzTDl-v3aD72U737ge5ghxTBF6lB3jmpIZI4g-Pvg_yp6FsEaopBVjT7MjQusa1QU9zuL1CvLORqdWrtfeyjZfQu86yJ3Jv0kvu83Khui6ocsV-K3NTz_aRIA8e5fHpDXWh5h72HgI0EcZ7TYFnd9vys62NxMfqyU8z54Y2QZ4Ma4n2c_Pn64vvs4ur74sLs4vZ4rVJM4o4RUziJSa10byhpUVZ5rrkheaKC2LogZJOFPMUKo5K6qqJIWuGs0Q0sDoSfZ677tpXRBjw4LABeGEVgQXiVjsCe3kWmy87aS_EU5acRtwfimkj1a1IBCujFEcuEImJW4aKg2qOcEVYY1kTfL6MGYbmg60St3wsp2YTnd6uxJLtxWUlwgVKBmcjgbe_R4gRNHZoKBtZQ9uuD13TXAqkSb0zT_ow9WN1FKmAmxvXMqrdqbivOAV5oSgXdr5A1T6NHRWpddlbIpPBGcTQWIi_IlLOYQgFj--_z979WvKvj1gVyDbuAquHaJ1fZiCxR5U3oXgwdw3GSOxG467bojdcIhxOJLs1eEF3YvupoH-BaAXCj4</recordid><startdate>20130822</startdate><enddate>20130822</enddate><creator>Yan, Hong-Bin</creator><creator>Wang, Xing-Ye</creator><creator>Lou, Zhong-Zi</creator><creator>Li, Li</creator><creator>Blair, David</creator><creator>Yin, Hong</creator><creator>Cai, Jin-Zhong</creator><creator>Dai, Xue-Ling</creator><creator>Lei, Meng-Tong</creator><creator>Zhu, Xing-Quan</creator><creator>Cai, Xue-Peng</creator><creator>Jia, Wan-Zhong</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20130822</creationdate><title>The mitochondrial genome of Paramphistomum cervi (Digenea), the first representative for the family Paramphistomidae</title><author>Yan, Hong-Bin ; Wang, Xing-Ye ; Lou, Zhong-Zi ; Li, Li ; Blair, David ; Yin, Hong ; Cai, Jin-Zhong ; Dai, Xue-Ling ; Lei, Meng-Tong ; Zhu, Xing-Quan ; Cai, Xue-Peng ; Jia, Wan-Zhong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c692t-32786f025d79fa7b65876d7d574d2cda449ea276c6f33d76488524d8bd600de63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Agriculture</topic><topic>Amino acids</topic><topic>Animal sciences</topic><topic>Animals</topic><topic>Base Sequence</topic><topic>Bayes Theorem</topic><topic>Bayesian analysis</topic><topic>Bioinformatics</topic><topic>Biological evolution</topic><topic>Biology</topic><topic>Cestoda</topic><topic>Clonorchis sinensis</topic><topic>Completeness</topic><topic>Deoxyribonucleic acid</topic><topic>Digenea</topic><topic>DNA</topic><topic>DNA Primers</topic><topic>DNA, Mitochondrial - genetics</topic><topic>Ecological monitoring</topic><topic>Gene Order</topic><topic>Gene sequencing</topic><topic>Genes</topic><topic>Genetic Markers</topic><topic>Genetic Variation</topic><topic>Genome, Mitochondrial</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Infections</topic><topic>Laboratories</topic><topic>Mitochondrial DNA</topic><topic>Molecular Sequence Data</topic><topic>Non-coding RNA</topic><topic>Nucleic Acid Conformation</topic><topic>Nucleotide sequence</topic><topic>Open Reading Frames</topic><topic>Paramphistomatidae - genetics</topic><topic>Paramphistomum cervi</topic><topic>Parasites</topic><topic>Parasitology</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Platyhelminthes</topic><topic>Public health</topic><topic>Ribonucleic acid</topic><topic>Ribosomal DNA</topic><topic>Ribosomal RNA</topic><topic>RNA</topic><topic>RNA, Transfer - genetics</topic><topic>RNA, Untranslated - genetics</topic><topic>rRNA</topic><topic>Schistosoma</topic><topic>Sequence Analysis, Protein</topic><topic>Transfer RNA</topic><topic>Trematoda</topic><topic>Veterinary medicine</topic><topic>Veterinary Science</topic><topic>Zoology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yan, Hong-Bin</creatorcontrib><creatorcontrib>Wang, Xing-Ye</creatorcontrib><creatorcontrib>Lou, Zhong-Zi</creatorcontrib><creatorcontrib>Li, Li</creatorcontrib><creatorcontrib>Blair, David</creatorcontrib><creatorcontrib>Yin, Hong</creatorcontrib><creatorcontrib>Cai, Jin-Zhong</creatorcontrib><creatorcontrib>Dai, Xue-Ling</creatorcontrib><creatorcontrib>Lei, Meng-Tong</creatorcontrib><creatorcontrib>Zhu, Xing-Quan</creatorcontrib><creatorcontrib>Cai, Xue-Peng</creatorcontrib><creatorcontrib>Jia, Wan-Zhong</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Nursing & Allied Health Database</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Meteorological & Geoastrophysical Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Materials Science Database</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>Meteorological & Geoastrophysical Abstracts - Academic</collection><collection>ProQuest Engineering Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Nursing & Allied Health Premium</collection><collection>Advanced Technologies & Aerospace Database</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Materials Science Collection</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yan, Hong-Bin</au><au>Wang, Xing-Ye</au><au>Lou, Zhong-Zi</au><au>Li, Li</au><au>Blair, David</au><au>Yin, Hong</au><au>Cai, Jin-Zhong</au><au>Dai, Xue-Ling</au><au>Lei, Meng-Tong</au><au>Zhu, Xing-Quan</au><au>Cai, Xue-Peng</au><au>Jia, Wan-Zhong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The mitochondrial genome of Paramphistomum cervi (Digenea), the first representative for the family Paramphistomidae</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2013-08-22</date><risdate>2013</risdate><volume>8</volume><issue>8</issue><spage>e71300</spage><epage>e71300</epage><pages>e71300-e71300</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>We determined the complete mitochondrial DNA (mtDNA) sequence of a fluke, Paramphistomum cervi (Digenea: Paramphistomidae). This genome (14,014 bp) is slightly larger than that of Clonorchis sinensis (13,875 bp), but smaller than those of other digenean species. The mt genome of P. cervi contains 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 2 non-coding regions (NCRs), a complement consistent with those of other digeneans. The arrangement of protein-coding and ribosomal RNA genes in the P. cervi mitochondrial genome is identical to that of other digeneans except for a group of Schistosoma species that exhibit a derived arrangement. The positions of some transfer RNA genes differ. Bayesian phylogenetic analyses, based on concatenated nucleotide sequences and amino-acid sequences of the 12 protein-coding genes, placed P. cervi within the Order Plagiorchiida, but relationships depicted within that order were not quite as expected from previous studies. The complete mtDNA sequence of P. cervi provides important genetic markers for diagnostics, ecological and evolutionary studies of digeneans.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>23990943</pmid><doi>10.1371/journal.pone.0071300</doi><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1932-6203 |
ispartof | PloS one, 2013-08, Vol.8 (8), p.e71300-e71300 |
issn | 1932-6203 1932-6203 |
language | eng |
recordid | cdi_plos_journals_1427238214 |
source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Free Full-Text Journals in Chemistry; Public Library of Science (PLoS) |
subjects | Agriculture Amino acids Animal sciences Animals Base Sequence Bayes Theorem Bayesian analysis Bioinformatics Biological evolution Biology Cestoda Clonorchis sinensis Completeness Deoxyribonucleic acid Digenea DNA DNA Primers DNA, Mitochondrial - genetics Ecological monitoring Gene Order Gene sequencing Genes Genetic Markers Genetic Variation Genome, Mitochondrial Genomes Genomics Infections Laboratories Mitochondrial DNA Molecular Sequence Data Non-coding RNA Nucleic Acid Conformation Nucleotide sequence Open Reading Frames Paramphistomatidae - genetics Paramphistomum cervi Parasites Parasitology Phylogenetics Phylogeny Platyhelminthes Public health Ribonucleic acid Ribosomal DNA Ribosomal RNA RNA RNA, Transfer - genetics RNA, Untranslated - genetics rRNA Schistosoma Sequence Analysis, Protein Transfer RNA Trematoda Veterinary medicine Veterinary Science Zoology |
title | The mitochondrial genome of Paramphistomum cervi (Digenea), the first representative for the family Paramphistomidae |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-04T02%3A04%3A48IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20mitochondrial%20genome%20of%20Paramphistomum%20cervi%20(Digenea),%20the%20first%20representative%20for%20the%20family%20Paramphistomidae&rft.jtitle=PloS%20one&rft.au=Yan,%20Hong-Bin&rft.date=2013-08-22&rft.volume=8&rft.issue=8&rft.spage=e71300&rft.epage=e71300&rft.pages=e71300-e71300&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0071300&rft_dat=%3Cgale_plos_%3EA478172200%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1427238214&rft_id=info:pmid/23990943&rft_galeid=A478172200&rft_doaj_id=oai_doaj_org_article_018ffc7e7c0f49ebb3af09721826ba6b&rfr_iscdi=true |