The mitochondrial genome of Paramphistomum cervi (Digenea), the first representative for the family Paramphistomidae

We determined the complete mitochondrial DNA (mtDNA) sequence of a fluke, Paramphistomum cervi (Digenea: Paramphistomidae). This genome (14,014 bp) is slightly larger than that of Clonorchis sinensis (13,875 bp), but smaller than those of other digenean species. The mt genome of P. cervi contains 12...

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Veröffentlicht in:PloS one 2013-08, Vol.8 (8), p.e71300-e71300
Hauptverfasser: Yan, Hong-Bin, Wang, Xing-Ye, Lou, Zhong-Zi, Li, Li, Blair, David, Yin, Hong, Cai, Jin-Zhong, Dai, Xue-Ling, Lei, Meng-Tong, Zhu, Xing-Quan, Cai, Xue-Peng, Jia, Wan-Zhong
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container_issue 8
container_start_page e71300
container_title PloS one
container_volume 8
creator Yan, Hong-Bin
Wang, Xing-Ye
Lou, Zhong-Zi
Li, Li
Blair, David
Yin, Hong
Cai, Jin-Zhong
Dai, Xue-Ling
Lei, Meng-Tong
Zhu, Xing-Quan
Cai, Xue-Peng
Jia, Wan-Zhong
description We determined the complete mitochondrial DNA (mtDNA) sequence of a fluke, Paramphistomum cervi (Digenea: Paramphistomidae). This genome (14,014 bp) is slightly larger than that of Clonorchis sinensis (13,875 bp), but smaller than those of other digenean species. The mt genome of P. cervi contains 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 2 non-coding regions (NCRs), a complement consistent with those of other digeneans. The arrangement of protein-coding and ribosomal RNA genes in the P. cervi mitochondrial genome is identical to that of other digeneans except for a group of Schistosoma species that exhibit a derived arrangement. The positions of some transfer RNA genes differ. Bayesian phylogenetic analyses, based on concatenated nucleotide sequences and amino-acid sequences of the 12 protein-coding genes, placed P. cervi within the Order Plagiorchiida, but relationships depicted within that order were not quite as expected from previous studies. The complete mtDNA sequence of P. cervi provides important genetic markers for diagnostics, ecological and evolutionary studies of digeneans.
doi_str_mv 10.1371/journal.pone.0071300
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This genome (14,014 bp) is slightly larger than that of Clonorchis sinensis (13,875 bp), but smaller than those of other digenean species. The mt genome of P. cervi contains 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 2 non-coding regions (NCRs), a complement consistent with those of other digeneans. The arrangement of protein-coding and ribosomal RNA genes in the P. cervi mitochondrial genome is identical to that of other digeneans except for a group of Schistosoma species that exhibit a derived arrangement. The positions of some transfer RNA genes differ. Bayesian phylogenetic analyses, based on concatenated nucleotide sequences and amino-acid sequences of the 12 protein-coding genes, placed P. cervi within the Order Plagiorchiida, but relationships depicted within that order were not quite as expected from previous studies. 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This genome (14,014 bp) is slightly larger than that of Clonorchis sinensis (13,875 bp), but smaller than those of other digenean species. The mt genome of P. cervi contains 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 2 non-coding regions (NCRs), a complement consistent with those of other digeneans. The arrangement of protein-coding and ribosomal RNA genes in the P. cervi mitochondrial genome is identical to that of other digeneans except for a group of Schistosoma species that exhibit a derived arrangement. The positions of some transfer RNA genes differ. Bayesian phylogenetic analyses, based on concatenated nucleotide sequences and amino-acid sequences of the 12 protein-coding genes, placed P. cervi within the Order Plagiorchiida, but relationships depicted within that order were not quite as expected from previous studies. The complete mtDNA sequence of P. cervi provides important genetic markers for diagnostics, ecological and evolutionary studies of digeneans.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>23990943</pmid><doi>10.1371/journal.pone.0071300</doi><oa>free_for_read</oa></addata></record>
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subjects Agriculture
Amino acids
Animal sciences
Animals
Base Sequence
Bayes Theorem
Bayesian analysis
Bioinformatics
Biological evolution
Biology
Cestoda
Clonorchis sinensis
Completeness
Deoxyribonucleic acid
Digenea
DNA
DNA Primers
DNA, Mitochondrial - genetics
Ecological monitoring
Gene Order
Gene sequencing
Genes
Genetic Markers
Genetic Variation
Genome, Mitochondrial
Genomes
Genomics
Infections
Laboratories
Mitochondrial DNA
Molecular Sequence Data
Non-coding RNA
Nucleic Acid Conformation
Nucleotide sequence
Open Reading Frames
Paramphistomatidae - genetics
Paramphistomum cervi
Parasites
Parasitology
Phylogenetics
Phylogeny
Platyhelminthes
Public health
Ribonucleic acid
Ribosomal DNA
Ribosomal RNA
RNA
RNA, Transfer - genetics
RNA, Untranslated - genetics
rRNA
Schistosoma
Sequence Analysis, Protein
Transfer RNA
Trematoda
Veterinary medicine
Veterinary Science
Zoology
title The mitochondrial genome of Paramphistomum cervi (Digenea), the first representative for the family Paramphistomidae
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