Quantifying species diversity with a DNA barcoding-based method: Tibetan moth species (Noctuidae) on the Qinghai-Tibetan Plateau
With the ongoing loss of biodiversity, there is a great need for fast and effective ways to assess species richness and diversity: DNA barcoding provides a powerful new tool for this. We investigated this approach by focusing on the Tibetan plateau, which is one of the world's top biodiversity...
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description | With the ongoing loss of biodiversity, there is a great need for fast and effective ways to assess species richness and diversity: DNA barcoding provides a powerful new tool for this. We investigated this approach by focusing on the Tibetan plateau, which is one of the world's top biodiversity hotspots. There have been few studies of its invertebrates, although they constitute the vast majority of the region's diversity. Here we investigated species diversity of the lepidopteran family Noctuidae, across different environmental gradients, using measurements based on traditional morphology as well as on DNA barcoding. The COI barcode showed an average interspecific K2P distance of 9.45±2.08%, which is about four times larger than the mean intraspecific distance (1.85±3.20%). Using six diversity indices, we did not detect any significant differences in estimated species diversity between measurements based on traditional morphology and on DNA barcoding. Furthermore, we found strong positive correlations between them, indicating that barcode-based measures of species diversity can serve as a good surrogate for morphology-based measures in most situations tested. Eastern communities were found to have significantly higher diversity than Western ones. Among 22 environmental factors tested, we found that three (precipitation of driest month, precipitation of driest quarter, and precipitation of coldest quarter) were significantly correlated with species diversity. Our results indicate that these factors could be the key ecological factors influencing the species diversity of the lepidopteran family Noctuidae on the Tibetan plateau. |
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Alex</contributor><creatorcontrib>Jin, Qian ; Han, Huilin ; Hu, XiMin ; Li, XinHai ; Zhu, ChaoDong ; Ho, Simon Y W ; Ward, Robert D ; Zhang, Ai-bing ; Smith, M. Alex</creatorcontrib><description>With the ongoing loss of biodiversity, there is a great need for fast and effective ways to assess species richness and diversity: DNA barcoding provides a powerful new tool for this. We investigated this approach by focusing on the Tibetan plateau, which is one of the world's top biodiversity hotspots. There have been few studies of its invertebrates, although they constitute the vast majority of the region's diversity. Here we investigated species diversity of the lepidopteran family Noctuidae, across different environmental gradients, using measurements based on traditional morphology as well as on DNA barcoding. The COI barcode showed an average interspecific K2P distance of 9.45±2.08%, which is about four times larger than the mean intraspecific distance (1.85±3.20%). Using six diversity indices, we did not detect any significant differences in estimated species diversity between measurements based on traditional morphology and on DNA barcoding. Furthermore, we found strong positive correlations between them, indicating that barcode-based measures of species diversity can serve as a good surrogate for morphology-based measures in most situations tested. Eastern communities were found to have significantly higher diversity than Western ones. Among 22 environmental factors tested, we found that three (precipitation of driest month, precipitation of driest quarter, and precipitation of coldest quarter) were significantly correlated with species diversity. Our results indicate that these factors could be the key ecological factors influencing the species diversity of the lepidopteran family Noctuidae on the Tibetan plateau.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0064428</identifier><identifier>PMID: 23741330</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Agricultural production ; Animals ; Apamea ; Arthropoda ; Arthropods ; Bayes Theorem ; Biodiversity ; Biodiversity hot spots ; Biodiversity loss ; Biology ; Butterflies & moths ; Deoxyribonucleic acid ; Diversity indices ; DNA ; DNA Barcoding, Taxonomic - methods ; Ecological effects ; Ecology ; Electron Transport Complex IV - classification ; Electron Transport Complex IV - genetics ; Environmental factors ; Environmental testing ; Evolutionary biology ; Female ; Forestry ; Gene sequencing ; Humidity ; Identification ; Integrated software ; Interspecific ; Invertebrates ; Laboratories ; Life sciences ; Male ; Methods ; Morphology ; Moths - anatomy & histology ; Moths - classification ; Moths - genetics ; Noctuidae ; Phylogenetics ; Phylogeny ; Precipitation ; Principal components analysis ; Seasons ; Species diversity ; Species richness ; Studies ; Tibet ; Zoology</subject><ispartof>PloS one, 2013-05, Vol.8 (5), p.e64428-e64428</ispartof><rights>2013 Jin et al. 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Alex</contributor><creatorcontrib>Jin, Qian</creatorcontrib><creatorcontrib>Han, Huilin</creatorcontrib><creatorcontrib>Hu, XiMin</creatorcontrib><creatorcontrib>Li, XinHai</creatorcontrib><creatorcontrib>Zhu, ChaoDong</creatorcontrib><creatorcontrib>Ho, Simon Y W</creatorcontrib><creatorcontrib>Ward, Robert D</creatorcontrib><creatorcontrib>Zhang, Ai-bing</creatorcontrib><title>Quantifying species diversity with a DNA barcoding-based method: Tibetan moth species (Noctuidae) on the Qinghai-Tibetan Plateau</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>With the ongoing loss of biodiversity, there is a great need for fast and effective ways to assess species richness and diversity: DNA barcoding provides a powerful new tool for this. We investigated this approach by focusing on the Tibetan plateau, which is one of the world's top biodiversity hotspots. 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Our results indicate that these factors could be the key ecological factors influencing the species diversity of the lepidopteran family Noctuidae on the Tibetan plateau.</description><subject>Agricultural production</subject><subject>Animals</subject><subject>Apamea</subject><subject>Arthropoda</subject><subject>Arthropods</subject><subject>Bayes Theorem</subject><subject>Biodiversity</subject><subject>Biodiversity hot spots</subject><subject>Biodiversity loss</subject><subject>Biology</subject><subject>Butterflies & moths</subject><subject>Deoxyribonucleic acid</subject><subject>Diversity indices</subject><subject>DNA</subject><subject>DNA Barcoding, Taxonomic - methods</subject><subject>Ecological effects</subject><subject>Ecology</subject><subject>Electron Transport Complex IV - classification</subject><subject>Electron Transport Complex IV - genetics</subject><subject>Environmental factors</subject><subject>Environmental testing</subject><subject>Evolutionary biology</subject><subject>Female</subject><subject>Forestry</subject><subject>Gene sequencing</subject><subject>Humidity</subject><subject>Identification</subject><subject>Integrated software</subject><subject>Interspecific</subject><subject>Invertebrates</subject><subject>Laboratories</subject><subject>Life sciences</subject><subject>Male</subject><subject>Methods</subject><subject>Morphology</subject><subject>Moths - anatomy & histology</subject><subject>Moths - classification</subject><subject>Moths - genetics</subject><subject>Noctuidae</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Precipitation</subject><subject>Principal components analysis</subject><subject>Seasons</subject><subject>Species diversity</subject><subject>Species richness</subject><subject>Studies</subject><subject>Tibet</subject><subject>Zoology</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>DOA</sourceid><recordid>eNptkstu1DAUhiMEohd4AwSW2JRFBl8Sx2GBVJVbpapQqawtxz6ZeJTEU9spml0fHU8nU7WIlS2f7_zn4j_L3hC8IKwiH1du8qPqF2s3wgJjXhRUPMsOSc1ozilmzx_dD7KjEFYYl0xw_jI7oKwqCGP4MLu7mtQYbbux4xKFNWgLARl7Cz7YuEF_bOyQQl8uT1GjvHYmYXmjAhg0QOyc-YSubQNRjWhwCd0rnFw6HSdrFHxAbkSxA3SVUjtl8z3_q1cR1PQqe9GqPsDr-TzOfn_7en32I7_4-f387PQi1yXlMdcUdCtIW_C2IoQ2uimBirYETJkyFRCdxue0VlybGgjnoqLCEFJoXjYpzI6zdzvdde-CnJcXJGFpP3UhWJWI8x1hnFrJtbeD8hvplJX3D84vpfLR6h4kSV3gmrGy4aZgRIkSGs2MKASFtiq31T7P1aZmAKNhjF71T0SfRkbbyaW7lYzz9GkiCZzMAt7dTBCiHGzQ0PdqBDfd913WQmCyRd__g_5_umJHae9C8NA-NEOw3BpqnyW3hpKzoVLa28eDPCTtHcT-AiNvyfk</recordid><startdate>20130531</startdate><enddate>20130531</enddate><creator>Jin, Qian</creator><creator>Han, Huilin</creator><creator>Hu, XiMin</creator><creator>Li, XinHai</creator><creator>Zhu, ChaoDong</creator><creator>Ho, Simon Y W</creator><creator>Ward, Robert D</creator><creator>Zhang, Ai-bing</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20130531</creationdate><title>Quantifying species diversity with a DNA barcoding-based method: Tibetan moth species (Noctuidae) on the Qinghai-Tibetan Plateau</title><author>Jin, Qian ; Han, Huilin ; Hu, XiMin ; Li, XinHai ; Zhu, ChaoDong ; Ho, Simon Y W ; Ward, Robert D ; Zhang, Ai-bing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c526t-c2ecf81f46f7112bcb5e28f5e023ad7e1c428629a6cd9e1668728d114c65b7e13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Agricultural production</topic><topic>Animals</topic><topic>Apamea</topic><topic>Arthropoda</topic><topic>Arthropods</topic><topic>Bayes Theorem</topic><topic>Biodiversity</topic><topic>Biodiversity hot spots</topic><topic>Biodiversity loss</topic><topic>Biology</topic><topic>Butterflies & moths</topic><topic>Deoxyribonucleic acid</topic><topic>Diversity indices</topic><topic>DNA</topic><topic>DNA Barcoding, Taxonomic - 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Alex</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Quantifying species diversity with a DNA barcoding-based method: Tibetan moth species (Noctuidae) on the Qinghai-Tibetan Plateau</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2013-05-31</date><risdate>2013</risdate><volume>8</volume><issue>5</issue><spage>e64428</spage><epage>e64428</epage><pages>e64428-e64428</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>With the ongoing loss of biodiversity, there is a great need for fast and effective ways to assess species richness and diversity: DNA barcoding provides a powerful new tool for this. We investigated this approach by focusing on the Tibetan plateau, which is one of the world's top biodiversity hotspots. There have been few studies of its invertebrates, although they constitute the vast majority of the region's diversity. Here we investigated species diversity of the lepidopteran family Noctuidae, across different environmental gradients, using measurements based on traditional morphology as well as on DNA barcoding. The COI barcode showed an average interspecific K2P distance of 9.45±2.08%, which is about four times larger than the mean intraspecific distance (1.85±3.20%). Using six diversity indices, we did not detect any significant differences in estimated species diversity between measurements based on traditional morphology and on DNA barcoding. Furthermore, we found strong positive correlations between them, indicating that barcode-based measures of species diversity can serve as a good surrogate for morphology-based measures in most situations tested. Eastern communities were found to have significantly higher diversity than Western ones. Among 22 environmental factors tested, we found that three (precipitation of driest month, precipitation of driest quarter, and precipitation of coldest quarter) were significantly correlated with species diversity. Our results indicate that these factors could be the key ecological factors influencing the species diversity of the lepidopteran family Noctuidae on the Tibetan plateau.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>23741330</pmid><doi>10.1371/journal.pone.0064428</doi><oa>free_for_read</oa></addata></record> |
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subjects | Agricultural production Animals Apamea Arthropoda Arthropods Bayes Theorem Biodiversity Biodiversity hot spots Biodiversity loss Biology Butterflies & moths Deoxyribonucleic acid Diversity indices DNA DNA Barcoding, Taxonomic - methods Ecological effects Ecology Electron Transport Complex IV - classification Electron Transport Complex IV - genetics Environmental factors Environmental testing Evolutionary biology Female Forestry Gene sequencing Humidity Identification Integrated software Interspecific Invertebrates Laboratories Life sciences Male Methods Morphology Moths - anatomy & histology Moths - classification Moths - genetics Noctuidae Phylogenetics Phylogeny Precipitation Principal components analysis Seasons Species diversity Species richness Studies Tibet Zoology |
title | Quantifying species diversity with a DNA barcoding-based method: Tibetan moth species (Noctuidae) on the Qinghai-Tibetan Plateau |
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