Novel algorithm for non-invasive assessment of fibrosis in NAFLD
Various conditions of liver disease and the downsides of liver biopsy call for a non-invasive option to assess liver fibrosis. A non-invasive score would be especially useful to identify patients with slow advancing fibrotic processes, as in Non-Alcoholic Fatty Liver Disease (NAFLD), which should un...
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description | Various conditions of liver disease and the downsides of liver biopsy call for a non-invasive option to assess liver fibrosis. A non-invasive score would be especially useful to identify patients with slow advancing fibrotic processes, as in Non-Alcoholic Fatty Liver Disease (NAFLD), which should undergo histological examination for fibrosis.
Classic liver serum parameters, hyaluronic acid (HA) and cell death markers of 126 patients undergoing bariatric surgery for morbid obesity were analyzed by machine learning techniques (logistic regression, k-nearest neighbors, linear support vector machines, rule-based systems, decision trees and random forest (RF)). Specificity, sensitivity and accuracy of the evaluated datasets to predict fibrosis were assessed.
None of the single parameters (ALT, AST, M30, M60, HA) did differ significantly between patients with a fibrosis score 1 or 2. However, combining these parameters using RFs reached 79% accuracy in fibrosis prediction with a sensitivity of more than 60% and specificity of 77%. Moreover, RFs identified the cell death markers M30 and M65 as more important for the decision than the classic liver parameters.
On the basis of serum parameters the generation of a fibrosis scoring system seems feasible, even when only marginally fibrotic tissue is available. Prospective evaluation of novel markers, i.e. cell death parameters, should be performed to identify an optimal set of fibrosis predictors. |
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Classic liver serum parameters, hyaluronic acid (HA) and cell death markers of 126 patients undergoing bariatric surgery for morbid obesity were analyzed by machine learning techniques (logistic regression, k-nearest neighbors, linear support vector machines, rule-based systems, decision trees and random forest (RF)). Specificity, sensitivity and accuracy of the evaluated datasets to predict fibrosis were assessed.
None of the single parameters (ALT, AST, M30, M60, HA) did differ significantly between patients with a fibrosis score 1 or 2. However, combining these parameters using RFs reached 79% accuracy in fibrosis prediction with a sensitivity of more than 60% and specificity of 77%. Moreover, RFs identified the cell death markers M30 and M65 as more important for the decision than the classic liver parameters.
On the basis of serum parameters the generation of a fibrosis scoring system seems feasible, even when only marginally fibrotic tissue is available. Prospective evaluation of novel markers, i.e. cell death parameters, should be performed to identify an optimal set of fibrosis predictors.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0062439</identifier><identifier>PMID: 23638085</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Adult ; Algorithms ; Apoptosis ; Artificial Intelligence ; Bioinformatics ; Biology ; Biomarkers ; Biopsy ; Cell death ; Decision Trees ; Fatty liver ; Fatty Liver - blood ; Fatty Liver - complications ; Fatty Liver - pathology ; Feasibility studies ; Female ; Fibrosis ; Gastroenterology ; Gastrointestinal surgery ; Hepatology ; Hospitals ; Humans ; Hyaluronic acid ; Learning algorithms ; Liver ; Liver - pathology ; Liver cirrhosis ; Liver Cirrhosis - blood ; Liver Cirrhosis - complications ; Liver Cirrhosis - diagnosis ; Liver Cirrhosis - pathology ; Liver diseases ; Machine learning ; Male ; Markers ; Medicine ; Middle Aged ; Mortality ; Non-alcoholic Fatty Liver Disease ; Parameter identification ; Parameter sensitivity ; Patients ; Prognosis ; Regression analysis ; Sensitivity ; Sensitivity analysis ; Support vector machines ; Surgery</subject><ispartof>PloS one, 2013-04, Vol.8 (4), p.e62439-e62439</ispartof><rights>2013 Sowa et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2013 Sowa et al 2013 Sowa et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c526t-893166d65ff8e2ac09173010635f71dde882fbae038f79c99ebe56cb869318b33</citedby><cites>FETCH-LOGICAL-c526t-893166d65ff8e2ac09173010635f71dde882fbae038f79c99ebe56cb869318b33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3640062/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3640062/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,861,882,2096,2915,23847,27905,27906,53772,53774,79349,79350</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23638085$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Syn, Wing-Kin</contributor><creatorcontrib>Sowa, Jan-Peter</creatorcontrib><creatorcontrib>Heider, Dominik</creatorcontrib><creatorcontrib>Bechmann, Lars Peter</creatorcontrib><creatorcontrib>Gerken, Guido</creatorcontrib><creatorcontrib>Hoffmann, Daniel</creatorcontrib><creatorcontrib>Canbay, Ali</creatorcontrib><title>Novel algorithm for non-invasive assessment of fibrosis in NAFLD</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Various conditions of liver disease and the downsides of liver biopsy call for a non-invasive option to assess liver fibrosis. A non-invasive score would be especially useful to identify patients with slow advancing fibrotic processes, as in Non-Alcoholic Fatty Liver Disease (NAFLD), which should undergo histological examination for fibrosis.
Classic liver serum parameters, hyaluronic acid (HA) and cell death markers of 126 patients undergoing bariatric surgery for morbid obesity were analyzed by machine learning techniques (logistic regression, k-nearest neighbors, linear support vector machines, rule-based systems, decision trees and random forest (RF)). Specificity, sensitivity and accuracy of the evaluated datasets to predict fibrosis were assessed.
None of the single parameters (ALT, AST, M30, M60, HA) did differ significantly between patients with a fibrosis score 1 or 2. However, combining these parameters using RFs reached 79% accuracy in fibrosis prediction with a sensitivity of more than 60% and specificity of 77%. Moreover, RFs identified the cell death markers M30 and M65 as more important for the decision than the classic liver parameters.
On the basis of serum parameters the generation of a fibrosis scoring system seems feasible, even when only marginally fibrotic tissue is available. Prospective evaluation of novel markers, i.e. cell death parameters, should be performed to identify an optimal set of fibrosis predictors.</description><subject>Adult</subject><subject>Algorithms</subject><subject>Apoptosis</subject><subject>Artificial Intelligence</subject><subject>Bioinformatics</subject><subject>Biology</subject><subject>Biomarkers</subject><subject>Biopsy</subject><subject>Cell death</subject><subject>Decision Trees</subject><subject>Fatty liver</subject><subject>Fatty Liver - blood</subject><subject>Fatty Liver - complications</subject><subject>Fatty Liver - pathology</subject><subject>Feasibility studies</subject><subject>Female</subject><subject>Fibrosis</subject><subject>Gastroenterology</subject><subject>Gastrointestinal surgery</subject><subject>Hepatology</subject><subject>Hospitals</subject><subject>Humans</subject><subject>Hyaluronic acid</subject><subject>Learning algorithms</subject><subject>Liver</subject><subject>Liver - pathology</subject><subject>Liver cirrhosis</subject><subject>Liver Cirrhosis - blood</subject><subject>Liver Cirrhosis - complications</subject><subject>Liver Cirrhosis - diagnosis</subject><subject>Liver Cirrhosis - pathology</subject><subject>Liver diseases</subject><subject>Machine learning</subject><subject>Male</subject><subject>Markers</subject><subject>Medicine</subject><subject>Middle Aged</subject><subject>Mortality</subject><subject>Non-alcoholic Fatty Liver Disease</subject><subject>Parameter identification</subject><subject>Parameter sensitivity</subject><subject>Patients</subject><subject>Prognosis</subject><subject>Regression analysis</subject><subject>Sensitivity</subject><subject>Sensitivity analysis</subject><subject>Support vector machines</subject><subject>Surgery</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>DOA</sourceid><recordid>eNptUsFu1DAQtRAVLYU_QBCJSy9ZPHHi2BdE1VKotCoXOFuOM9565diLnV2pf98sm1Yt6skj-7038zyPkA9AF8Ba-LKO2xS0X2xiwAWlvKqZfEVOQLKq5BVlr5_Ux-RtzmtKGyY4f0OOK8aZoKI5Id9u4g59of0qJjfeDoWNqQgxlC7sdHY7LHTOmPOAYSyiLazrUswuFy4UN-dXy8t35Mhqn_H9fJ6SP1fff1_8LJe_flxfnC9L01R8LIVkwHnPG2sFVtpQCS2jQDlrbAt9j0JUttNImbCtNFJihw03neATUXSMnZJPB92Nj1nN5rMCVguoqlbyCXF9QPRRr9UmuUGnOxW1U_8uYlopnUZnPCpEbSUHaiSYupYgDWrkLdYItmbWTFpf527bbsDeTO6T9s9En78Ed6tWcacYr_e7mATOZoEU_24xj2pw2aD3OmDcHuZuKICACfr5P-jL7uoDykz_nxPax2GAqn0gHlhqHwg1B2KifXxq5JH0kAB2D8A7s1I</recordid><startdate>20130430</startdate><enddate>20130430</enddate><creator>Sowa, Jan-Peter</creator><creator>Heider, Dominik</creator><creator>Bechmann, Lars Peter</creator><creator>Gerken, Guido</creator><creator>Hoffmann, Daniel</creator><creator>Canbay, Ali</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20130430</creationdate><title>Novel algorithm for non-invasive assessment of fibrosis in NAFLD</title><author>Sowa, Jan-Peter ; Heider, Dominik ; Bechmann, Lars Peter ; Gerken, Guido ; Hoffmann, Daniel ; Canbay, Ali</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c526t-893166d65ff8e2ac09173010635f71dde882fbae038f79c99ebe56cb869318b33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Adult</topic><topic>Algorithms</topic><topic>Apoptosis</topic><topic>Artificial Intelligence</topic><topic>Bioinformatics</topic><topic>Biology</topic><topic>Biomarkers</topic><topic>Biopsy</topic><topic>Cell death</topic><topic>Decision Trees</topic><topic>Fatty liver</topic><topic>Fatty Liver - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sowa, Jan-Peter</au><au>Heider, Dominik</au><au>Bechmann, Lars Peter</au><au>Gerken, Guido</au><au>Hoffmann, Daniel</au><au>Canbay, Ali</au><au>Syn, Wing-Kin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Novel algorithm for non-invasive assessment of fibrosis in NAFLD</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2013-04-30</date><risdate>2013</risdate><volume>8</volume><issue>4</issue><spage>e62439</spage><epage>e62439</epage><pages>e62439-e62439</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Various conditions of liver disease and the downsides of liver biopsy call for a non-invasive option to assess liver fibrosis. A non-invasive score would be especially useful to identify patients with slow advancing fibrotic processes, as in Non-Alcoholic Fatty Liver Disease (NAFLD), which should undergo histological examination for fibrosis.
Classic liver serum parameters, hyaluronic acid (HA) and cell death markers of 126 patients undergoing bariatric surgery for morbid obesity were analyzed by machine learning techniques (logistic regression, k-nearest neighbors, linear support vector machines, rule-based systems, decision trees and random forest (RF)). Specificity, sensitivity and accuracy of the evaluated datasets to predict fibrosis were assessed.
None of the single parameters (ALT, AST, M30, M60, HA) did differ significantly between patients with a fibrosis score 1 or 2. However, combining these parameters using RFs reached 79% accuracy in fibrosis prediction with a sensitivity of more than 60% and specificity of 77%. Moreover, RFs identified the cell death markers M30 and M65 as more important for the decision than the classic liver parameters.
On the basis of serum parameters the generation of a fibrosis scoring system seems feasible, even when only marginally fibrotic tissue is available. Prospective evaluation of novel markers, i.e. cell death parameters, should be performed to identify an optimal set of fibrosis predictors.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>23638085</pmid><doi>10.1371/journal.pone.0062439</doi><oa>free_for_read</oa></addata></record> |
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subjects | Adult Algorithms Apoptosis Artificial Intelligence Bioinformatics Biology Biomarkers Biopsy Cell death Decision Trees Fatty liver Fatty Liver - blood Fatty Liver - complications Fatty Liver - pathology Feasibility studies Female Fibrosis Gastroenterology Gastrointestinal surgery Hepatology Hospitals Humans Hyaluronic acid Learning algorithms Liver Liver - pathology Liver cirrhosis Liver Cirrhosis - blood Liver Cirrhosis - complications Liver Cirrhosis - diagnosis Liver Cirrhosis - pathology Liver diseases Machine learning Male Markers Medicine Middle Aged Mortality Non-alcoholic Fatty Liver Disease Parameter identification Parameter sensitivity Patients Prognosis Regression analysis Sensitivity Sensitivity analysis Support vector machines Surgery |
title | Novel algorithm for non-invasive assessment of fibrosis in NAFLD |
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