Establishment of a TGFβ-induced post-transcriptional EMT gene signature

A major challenge in the clinical management of human cancers is to accurately stratify patients according to risk and likelihood of a favorable response. Stratification is confounded by significant phenotypic heterogeneity in some tumor types, often without obvious criteria for subdivision. Despite...

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Veröffentlicht in:PloS one 2012-12, Vol.7 (12), p.e52624
Hauptverfasser: Hussey, George S, Link, Laura A, Brown, Andrew S, Howley, Breege V, Chaudhury, Arindam, Howe, Philip H
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creator Hussey, George S
Link, Laura A
Brown, Andrew S
Howley, Breege V
Chaudhury, Arindam
Howe, Philip H
description A major challenge in the clinical management of human cancers is to accurately stratify patients according to risk and likelihood of a favorable response. Stratification is confounded by significant phenotypic heterogeneity in some tumor types, often without obvious criteria for subdivision. Despite intensive transcriptional array analyses, the identity and validation of cancer specific 'signature genes' remains elusive, partially because the transcriptome does not mirror the proteome. The simplification associated with transcriptomic profiling does not take into consideration changes in the relative expression among transcripts that arise due to post-transcriptional regulatory events. We have previously shown that TGFβ post-transcriptionally regulates epithelial-mesenchymal transition (EMT) by causing increased expression of two transcripts, Dab2 and ILEI, by modulating hnRNP E1 phosphorylation. Using a genome-wide combinatorial approach involving expression profiling and RIP-Chip analysis, we have identified a cohort of translationally regulated mRNAs that are induced during TGFβ-mediated EMT. Coordinated translational regulation by hnRNP E1 constitutes a post-transcriptional regulon inhibiting the expression of related EMT-facilitating genes, thus enabling the cell to rapidly and coordinately regulate multiple EMT-facilitating genes.
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Stratification is confounded by significant phenotypic heterogeneity in some tumor types, often without obvious criteria for subdivision. Despite intensive transcriptional array analyses, the identity and validation of cancer specific 'signature genes' remains elusive, partially because the transcriptome does not mirror the proteome. The simplification associated with transcriptomic profiling does not take into consideration changes in the relative expression among transcripts that arise due to post-transcriptional regulatory events. We have previously shown that TGFβ post-transcriptionally regulates epithelial-mesenchymal transition (EMT) by causing increased expression of two transcripts, Dab2 and ILEI, by modulating hnRNP E1 phosphorylation. Using a genome-wide combinatorial approach involving expression profiling and RIP-Chip analysis, we have identified a cohort of translationally regulated mRNAs that are induced during TGFβ-mediated EMT. 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subjects Animals
Base Sequence
Biochemistry
Biology
Cancer
Cluster Analysis
Combinatorial analysis
EMT gene
Epithelial-Mesenchymal Transition - genetics
Gene expression
Gene Expression Profiling
Gene Expression Regulation - drug effects
Genes
Genomes
Genomics
Heterogeneous-Nuclear Ribonucleoproteins - metabolism
Identification
Kinases
Medicine
Mesenchyme
Metastasis
Mice
Molecular biology
Nucleic Acid Conformation
Phosphorylation
Post-transcription
Protein Binding
Protein Biosynthesis
Proteomes
Proteomics
Reproducibility of Results
Response Elements
RNA Processing, Post-Transcriptional - drug effects
RNA, Messenger - chemistry
RNA, Messenger - genetics
RNA, Messenger - metabolism
Transforming Growth Factor beta - pharmacology
Yeast
title Establishment of a TGFβ-induced post-transcriptional EMT gene signature
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