The complete mitochondrial genome of Galba pervia (Gastropoda: Mollusca), an intermediate host snail of Fasciola spp
Complete mitochondrial (mt) genomes and the gene rearrangements are increasingly used as molecular markers for investigating phylogenetic relationships. Contributing to the complete mt genomes of Gastropoda, especially Pulmonata, we determined the mt genome of the freshwater snail Galba pervia, whic...
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| creator | Liu, Guo-Hua Wang, Shu-Yan Huang, Wei-Yi Zhao, Guang-Hui Wei, Shu-Jun Song, Hui-Qun Xu, Min-Jun Lin, Rui-Qing Zhou, Dong-Hui Zhu, Xing-Quan |
| description | Complete mitochondrial (mt) genomes and the gene rearrangements are increasingly used as molecular markers for investigating phylogenetic relationships. Contributing to the complete mt genomes of Gastropoda, especially Pulmonata, we determined the mt genome of the freshwater snail Galba pervia, which is an important intermediate host for Fasciola spp. in China. The complete mt genome of G. pervia is 13,768 bp in length. Its genome is circular, and consists of 37 genes, including 13 genes for proteins, 2 genes for rRNA, 22 genes for tRNA. The mt gene order of G. pervia showed novel arrangement (tRNA-His, tRNA-Gly and tRNA-Tyr change positions and directions) when compared with mt genomes of Pulmonata species sequenced to date, indicating divergence among different species within the Pulmonata. A total of 3655 amino acids were deduced to encode 13 protein genes. The most frequently used amino acid is Leu (15.05%), followed by Phe (11.24%), Ser (10.76%) and IIe (8.346%). Phylogenetic analyses using the concatenated amino acid sequences of the 13 protein-coding genes, with three different computational algorithms (maximum parsimony, maximum likelihood and bayesian analysis), all revealed that the families Lymnaeidae and Planorbidae are closely related two snail families, consistent with previous classifications based on morphological and molecular studies. The complete mt genome sequence of G. pervia showed a novel gene arrangement and it represents the first sequenced high quality mt genome of the family Lymnaeidae. These novel mtDNA data provide additional genetic markers for studying the epidemiology, population genetics and phylogeographics of freshwater snails, as well as for understanding interplay between the intermediate snail hosts and the intra-mollusca stages of Fasciola spp.. |
| doi_str_mv | 10.1371/journal.pone.0042172 |
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Contributing to the complete mt genomes of Gastropoda, especially Pulmonata, we determined the mt genome of the freshwater snail Galba pervia, which is an important intermediate host for Fasciola spp. in China. The complete mt genome of G. pervia is 13,768 bp in length. Its genome is circular, and consists of 37 genes, including 13 genes for proteins, 2 genes for rRNA, 22 genes for tRNA. The mt gene order of G. pervia showed novel arrangement (tRNA-His, tRNA-Gly and tRNA-Tyr change positions and directions) when compared with mt genomes of Pulmonata species sequenced to date, indicating divergence among different species within the Pulmonata. A total of 3655 amino acids were deduced to encode 13 protein genes. The most frequently used amino acid is Leu (15.05%), followed by Phe (11.24%), Ser (10.76%) and IIe (8.346%). Phylogenetic analyses using the concatenated amino acid sequences of the 13 protein-coding genes, with three different computational algorithms (maximum parsimony, maximum likelihood and bayesian analysis), all revealed that the families Lymnaeidae and Planorbidae are closely related two snail families, consistent with previous classifications based on morphological and molecular studies. The complete mt genome sequence of G. pervia showed a novel gene arrangement and it represents the first sequenced high quality mt genome of the family Lymnaeidae. These novel mtDNA data provide additional genetic markers for studying the epidemiology, population genetics and phylogeographics of freshwater snails, as well as for understanding interplay between the intermediate snail hosts and the intra-mollusca stages of Fasciola spp..</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0042172</identifier><identifier>PMID: 22844544</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Algorithms ; Amino acids ; Analysis ; Animal sciences ; Animals ; Bayesian analysis ; Bioinformatics ; Biology ; Codon - genetics ; Computer applications ; Deoxyribonucleic acid ; Divergence ; DNA ; Epidemiology ; Euthyneura ; Evolution ; Fasciola ; Fasciola - physiology ; Galba pervia ; Gastropoda ; Gene order ; Gene sequencing ; Genes ; Genes, Mitochondrial - genetics ; Genetic markers ; Genetic research ; Genetics ; Genome, Mitochondrial - genetics ; Genomes ; Genomics ; Glycine ; Host-Parasite Interactions ; Lymnaeidae ; Markers ; Mitochondria ; Mitochondrial DNA ; Mollusca ; Morphology ; Nucleotide sequence ; Opisthobranchia ; Parasitology ; Phylogenetics ; Phylogeny ; Planorbidae ; Population genetics ; Proteins ; Pulmonata ; RNA, Ribosomal - genetics ; RNA, Transfer - genetics ; rRNA ; Snails ; Snails - classification ; Snails - genetics ; Snails - parasitology ; Transfer RNA ; tRNA Gly ; tRNA His ; tRNA Tyr ; Veterinary medicine ; Veterinary Science ; Zoology</subject><ispartof>PloS one, 2012-07, Vol.7 (7), p.e42172-e42172</ispartof><rights>COPYRIGHT 2012 Public Library of Science</rights><rights>Liu et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2012 Liu et al 2012 Liu et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c659t-75be9f1334440f396afa84903fef7a63d0a60bf51cc016757d171093c2c784673</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3406003/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3406003/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2102,2928,23866,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22844544$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Ranganathan, Shoba</contributor><creatorcontrib>Liu, Guo-Hua</creatorcontrib><creatorcontrib>Wang, Shu-Yan</creatorcontrib><creatorcontrib>Huang, Wei-Yi</creatorcontrib><creatorcontrib>Zhao, Guang-Hui</creatorcontrib><creatorcontrib>Wei, Shu-Jun</creatorcontrib><creatorcontrib>Song, Hui-Qun</creatorcontrib><creatorcontrib>Xu, Min-Jun</creatorcontrib><creatorcontrib>Lin, Rui-Qing</creatorcontrib><creatorcontrib>Zhou, Dong-Hui</creatorcontrib><creatorcontrib>Zhu, Xing-Quan</creatorcontrib><title>The complete mitochondrial genome of Galba pervia (Gastropoda: Mollusca), an intermediate host snail of Fasciola spp</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Complete mitochondrial (mt) genomes and the gene rearrangements are increasingly used as molecular markers for investigating phylogenetic relationships. Contributing to the complete mt genomes of Gastropoda, especially Pulmonata, we determined the mt genome of the freshwater snail Galba pervia, which is an important intermediate host for Fasciola spp. in China. The complete mt genome of G. pervia is 13,768 bp in length. Its genome is circular, and consists of 37 genes, including 13 genes for proteins, 2 genes for rRNA, 22 genes for tRNA. The mt gene order of G. pervia showed novel arrangement (tRNA-His, tRNA-Gly and tRNA-Tyr change positions and directions) when compared with mt genomes of Pulmonata species sequenced to date, indicating divergence among different species within the Pulmonata. A total of 3655 amino acids were deduced to encode 13 protein genes. The most frequently used amino acid is Leu (15.05%), followed by Phe (11.24%), Ser (10.76%) and IIe (8.346%). Phylogenetic analyses using the concatenated amino acid sequences of the 13 protein-coding genes, with three different computational algorithms (maximum parsimony, maximum likelihood and bayesian analysis), all revealed that the families Lymnaeidae and Planorbidae are closely related two snail families, consistent with previous classifications based on morphological and molecular studies. The complete mt genome sequence of G. pervia showed a novel gene arrangement and it represents the first sequenced high quality mt genome of the family Lymnaeidae. These novel mtDNA data provide additional genetic markers for studying the epidemiology, population genetics and phylogeographics of freshwater snails, as well as for understanding interplay between the intermediate snail hosts and the intra-mollusca stages of Fasciola spp..</description><subject>Algorithms</subject><subject>Amino acids</subject><subject>Analysis</subject><subject>Animal sciences</subject><subject>Animals</subject><subject>Bayesian analysis</subject><subject>Bioinformatics</subject><subject>Biology</subject><subject>Codon - genetics</subject><subject>Computer applications</subject><subject>Deoxyribonucleic acid</subject><subject>Divergence</subject><subject>DNA</subject><subject>Epidemiology</subject><subject>Euthyneura</subject><subject>Evolution</subject><subject>Fasciola</subject><subject>Fasciola - physiology</subject><subject>Galba pervia</subject><subject>Gastropoda</subject><subject>Gene order</subject><subject>Gene sequencing</subject><subject>Genes</subject><subject>Genes, Mitochondrial - genetics</subject><subject>Genetic markers</subject><subject>Genetic research</subject><subject>Genetics</subject><subject>Genome, Mitochondrial - genetics</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Glycine</subject><subject>Host-Parasite Interactions</subject><subject>Lymnaeidae</subject><subject>Markers</subject><subject>Mitochondria</subject><subject>Mitochondrial DNA</subject><subject>Mollusca</subject><subject>Morphology</subject><subject>Nucleotide sequence</subject><subject>Opisthobranchia</subject><subject>Parasitology</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Planorbidae</subject><subject>Population genetics</subject><subject>Proteins</subject><subject>Pulmonata</subject><subject>RNA, Ribosomal - genetics</subject><subject>RNA, Transfer - genetics</subject><subject>rRNA</subject><subject>Snails</subject><subject>Snails - 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(Gastropoda: Mollusca), an intermediate host snail of Fasciola spp</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2012-07-26</date><risdate>2012</risdate><volume>7</volume><issue>7</issue><spage>e42172</spage><epage>e42172</epage><pages>e42172-e42172</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Complete mitochondrial (mt) genomes and the gene rearrangements are increasingly used as molecular markers for investigating phylogenetic relationships. Contributing to the complete mt genomes of Gastropoda, especially Pulmonata, we determined the mt genome of the freshwater snail Galba pervia, which is an important intermediate host for Fasciola spp. in China. The complete mt genome of G. pervia is 13,768 bp in length. Its genome is circular, and consists of 37 genes, including 13 genes for proteins, 2 genes for rRNA, 22 genes for tRNA. The mt gene order of G. pervia showed novel arrangement (tRNA-His, tRNA-Gly and tRNA-Tyr change positions and directions) when compared with mt genomes of Pulmonata species sequenced to date, indicating divergence among different species within the Pulmonata. A total of 3655 amino acids were deduced to encode 13 protein genes. The most frequently used amino acid is Leu (15.05%), followed by Phe (11.24%), Ser (10.76%) and IIe (8.346%). Phylogenetic analyses using the concatenated amino acid sequences of the 13 protein-coding genes, with three different computational algorithms (maximum parsimony, maximum likelihood and bayesian analysis), all revealed that the families Lymnaeidae and Planorbidae are closely related two snail families, consistent with previous classifications based on morphological and molecular studies. The complete mt genome sequence of G. pervia showed a novel gene arrangement and it represents the first sequenced high quality mt genome of the family Lymnaeidae. These novel mtDNA data provide additional genetic markers for studying the epidemiology, population genetics and phylogeographics of freshwater snails, as well as for understanding interplay between the intermediate snail hosts and the intra-mollusca stages of Fasciola spp..</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>22844544</pmid><doi>10.1371/journal.pone.0042172</doi><oa>free_for_read</oa></addata></record> |
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| identifier | ISSN: 1932-6203 |
| ispartof | PloS one, 2012-07, Vol.7 (7), p.e42172-e42172 |
| issn | 1932-6203 1932-6203 |
| language | eng |
| recordid | cdi_plos_journals_1325527283 |
| source | PubMed Central Free; MEDLINE; DOAJ Directory of Open Access Journals; Public Library of Science (PLoS) Journals Open Access; EZB-FREE-00999 freely available EZB journals; Free Full-Text Journals in Chemistry |
| subjects | Algorithms Amino acids Analysis Animal sciences Animals Bayesian analysis Bioinformatics Biology Codon - genetics Computer applications Deoxyribonucleic acid Divergence DNA Epidemiology Euthyneura Evolution Fasciola Fasciola - physiology Galba pervia Gastropoda Gene order Gene sequencing Genes Genes, Mitochondrial - genetics Genetic markers Genetic research Genetics Genome, Mitochondrial - genetics Genomes Genomics Glycine Host-Parasite Interactions Lymnaeidae Markers Mitochondria Mitochondrial DNA Mollusca Morphology Nucleotide sequence Opisthobranchia Parasitology Phylogenetics Phylogeny Planorbidae Population genetics Proteins Pulmonata RNA, Ribosomal - genetics RNA, Transfer - genetics rRNA Snails Snails - classification Snails - genetics Snails - parasitology Transfer RNA tRNA Gly tRNA His tRNA Tyr Veterinary medicine Veterinary Science Zoology |
| title | The complete mitochondrial genome of Galba pervia (Gastropoda: Mollusca), an intermediate host snail of Fasciola spp |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-18T18%3A50%3A24IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20complete%20mitochondrial%20genome%20of%20Galba%20pervia%20(Gastropoda:%20Mollusca),%20an%20intermediate%20host%20snail%20of%20Fasciola%20spp&rft.jtitle=PloS%20one&rft.au=Liu,%20Guo-Hua&rft.date=2012-07-26&rft.volume=7&rft.issue=7&rft.spage=e42172&rft.epage=e42172&rft.pages=e42172-e42172&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0042172&rft_dat=%3Cgale_plos_%3EA498251643%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1325527283&rft_id=info:pmid/22844544&rft_galeid=A498251643&rft_doaj_id=oai_doaj_org_article_52f972fdfbbb46328bc18e7ddac0f8af&rfr_iscdi=true |