Gene expression from bronchoscopy obtained tumour samples as a predictor of outcome in advanced inoperable lung cancer
Several studies have shown the prognostic and predictive potential of molecular markers in combined therapy for lung cancer. Most of them referred, however, to operable early stage NSCLC. The aim of the present study is to correlate the expression of multiple mRNA markers in bronchoscopy obtained ca...
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| Veröffentlicht in: | PloS one 2012-07, Vol.7 (7), p.e41379-e41379 |
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| creator | Suwinski, Rafal Klusek, Artur Tyszkiewicz, Tomasz Kowalska, Maria Szczesniak-Klusek, Bogna Gawkowska-Suwinska, Marzena Tukiendorf, Andrzej Kozielski, Jerzy Jarzab, Michal |
| description | Several studies have shown the prognostic and predictive potential of molecular markers in combined therapy for lung cancer. Most of them referred, however, to operable early stage NSCLC. The aim of the present study is to correlate the expression of multiple mRNA markers in bronchoscopy obtained cancer specimens with clinical outcome of advanced lung cancer.
Bronchoscopy cancer specimens were taken from 123 patients with radiological diagnosis of advanced lung tumor. Out of 123 patients 50 were diagnosed with squamous cell cancer, 17 with adenocarcinoma, 12 with NOS, 32 with SCLC and one with large cell neuroendocrinal cancer. In 11 patients other tumours were diagnosed. The group was heterogeneous with respect to clinical stage, performance of the patients and treatment. Quantitative real time PCR was carried out by ABI 7900 HT machine, with Universal Probe Library (Roche) fluorescent probes. The genes selected for the analysis were ERCC1, EGFR, BRCA1, CSF1, CA9, DUSP6, STAT1, ERBB3, MMD, FN1, and CDKN1B.
More than 50 ng of RNA (the amount considered sufficient for the analysis) was isolated in 82 out of 112 lung cancer specimens (73%), including 60/80 (75.0%) of NSCLC specimens and 22/32 (68,7%) of SCLC samples. The highest Cohen's κ coefficient for discrimination between small cell, squamous cell and adenocarcinoma was found for CDKN1B, CSF and EGFR1 (κ = 0.177, p = 0.0041). A multivariate Cox regression model has shown a significant impact of clinical stage (p |
| doi_str_mv | 10.1371/journal.pone.0041379 |
| format | Article |
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Bronchoscopy cancer specimens were taken from 123 patients with radiological diagnosis of advanced lung tumor. Out of 123 patients 50 were diagnosed with squamous cell cancer, 17 with adenocarcinoma, 12 with NOS, 32 with SCLC and one with large cell neuroendocrinal cancer. In 11 patients other tumours were diagnosed. The group was heterogeneous with respect to clinical stage, performance of the patients and treatment. Quantitative real time PCR was carried out by ABI 7900 HT machine, with Universal Probe Library (Roche) fluorescent probes. The genes selected for the analysis were ERCC1, EGFR, BRCA1, CSF1, CA9, DUSP6, STAT1, ERBB3, MMD, FN1, and CDKN1B.
More than 50 ng of RNA (the amount considered sufficient for the analysis) was isolated in 82 out of 112 lung cancer specimens (73%), including 60/80 (75.0%) of NSCLC specimens and 22/32 (68,7%) of SCLC samples. The highest Cohen's κ coefficient for discrimination between small cell, squamous cell and adenocarcinoma was found for CDKN1B, CSF and EGFR1 (κ = 0.177, p = 0.0041). A multivariate Cox regression model has shown a significant impact of clinical stage (p<0.001, RR = 4.19), ERCC1 (p = 0.01, RR = 0.43) and CA9 (p = 0.03, RR = 2.11) expression on overall survival in a group of 60 patients with NSCLC.
These results show the feasibility of multiple gene expression analysis in bronchoscopy obtained cancer specimens as prognostic markers in radiotherapy and chemotherapy for advanced lung cancer. A limiting factor was relatively high proportion of samples from which sufficient amount of RNA could not be isolated.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0041379</identifier><identifier>PMID: 22848476</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Adenocarcinoma ; Adult ; Aged ; Analysis ; Biology ; BRCA1 protein ; Breast cancer ; Bronchoscopy ; Cancer ; Care and treatment ; Cerebrospinal fluid ; Chemotherapy ; Correlation analysis ; Cyclin-dependent kinases ; Disease-Free Survival ; DNA probes ; Endocrinology ; Epidermal growth factor receptors ; ErbB-3 protein ; ERCC1 protein ; Feasibility studies ; Female ; Fibronectins ; Fluorescence ; Fluorescent indicators ; Gene expression ; Gene Expression Profiling ; Gene Expression Regulation, Neoplastic ; Genes ; Genetic research ; Humans ; Kinases ; Lung cancer ; Lung diseases ; Lung Neoplasms - metabolism ; Lung Neoplasms - mortality ; Lung Neoplasms - pathology ; Male ; Markers ; Medical diagnosis ; Medical prognosis ; Medicine ; Middle Aged ; Neoplasm Proteins - biosynthesis ; Nitric-oxide synthase ; Non-small cell lung cancer ; Non-small cell lung carcinoma ; Nuclear medicine ; Oncology ; Pathology ; Patient outcomes ; Patients ; Radiation therapy ; Radiotherapy ; Regression analysis ; Regression models ; Ribonucleic acid ; RNA ; Small cell lung carcinoma ; Stat1 protein ; Surgery ; Survival Rate ; Teaching hospitals ; Tumors</subject><ispartof>PloS one, 2012-07, Vol.7 (7), p.e41379-e41379</ispartof><rights>COPYRIGHT 2012 Public Library of Science</rights><rights>Suwinski et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2012 Suwinski et al 2012 Suwinski et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-5a1e513d1ebbbeb3bd49e2f3e0d5e002bd5844e5ba0c89c8c150533f4f55103</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3407200/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3407200/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2100,2926,23865,27923,27924,53790,53792,79371,79372</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22848476$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Navarro, Alfons</contributor><creatorcontrib>Suwinski, Rafal</creatorcontrib><creatorcontrib>Klusek, Artur</creatorcontrib><creatorcontrib>Tyszkiewicz, Tomasz</creatorcontrib><creatorcontrib>Kowalska, Maria</creatorcontrib><creatorcontrib>Szczesniak-Klusek, Bogna</creatorcontrib><creatorcontrib>Gawkowska-Suwinska, Marzena</creatorcontrib><creatorcontrib>Tukiendorf, Andrzej</creatorcontrib><creatorcontrib>Kozielski, Jerzy</creatorcontrib><creatorcontrib>Jarzab, Michal</creatorcontrib><title>Gene expression from bronchoscopy obtained tumour samples as a predictor of outcome in advanced inoperable lung cancer</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Several studies have shown the prognostic and predictive potential of molecular markers in combined therapy for lung cancer. Most of them referred, however, to operable early stage NSCLC. The aim of the present study is to correlate the expression of multiple mRNA markers in bronchoscopy obtained cancer specimens with clinical outcome of advanced lung cancer.
Bronchoscopy cancer specimens were taken from 123 patients with radiological diagnosis of advanced lung tumor. Out of 123 patients 50 were diagnosed with squamous cell cancer, 17 with adenocarcinoma, 12 with NOS, 32 with SCLC and one with large cell neuroendocrinal cancer. In 11 patients other tumours were diagnosed. The group was heterogeneous with respect to clinical stage, performance of the patients and treatment. Quantitative real time PCR was carried out by ABI 7900 HT machine, with Universal Probe Library (Roche) fluorescent probes. The genes selected for the analysis were ERCC1, EGFR, BRCA1, CSF1, CA9, DUSP6, STAT1, ERBB3, MMD, FN1, and CDKN1B.
More than 50 ng of RNA (the amount considered sufficient for the analysis) was isolated in 82 out of 112 lung cancer specimens (73%), including 60/80 (75.0%) of NSCLC specimens and 22/32 (68,7%) of SCLC samples. The highest Cohen's κ coefficient for discrimination between small cell, squamous cell and adenocarcinoma was found for CDKN1B, CSF and EGFR1 (κ = 0.177, p = 0.0041). A multivariate Cox regression model has shown a significant impact of clinical stage (p<0.001, RR = 4.19), ERCC1 (p = 0.01, RR = 0.43) and CA9 (p = 0.03, RR = 2.11) expression on overall survival in a group of 60 patients with NSCLC.
These results show the feasibility of multiple gene expression analysis in bronchoscopy obtained cancer specimens as prognostic markers in radiotherapy and chemotherapy for advanced lung cancer. A limiting factor was relatively high proportion of samples from which sufficient amount of RNA could not be isolated.</description><subject>Adenocarcinoma</subject><subject>Adult</subject><subject>Aged</subject><subject>Analysis</subject><subject>Biology</subject><subject>BRCA1 protein</subject><subject>Breast cancer</subject><subject>Bronchoscopy</subject><subject>Cancer</subject><subject>Care and treatment</subject><subject>Cerebrospinal fluid</subject><subject>Chemotherapy</subject><subject>Correlation analysis</subject><subject>Cyclin-dependent kinases</subject><subject>Disease-Free Survival</subject><subject>DNA probes</subject><subject>Endocrinology</subject><subject>Epidermal growth factor receptors</subject><subject>ErbB-3 protein</subject><subject>ERCC1 protein</subject><subject>Feasibility studies</subject><subject>Female</subject><subject>Fibronectins</subject><subject>Fluorescence</subject><subject>Fluorescent indicators</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Neoplastic</subject><subject>Genes</subject><subject>Genetic research</subject><subject>Humans</subject><subject>Kinases</subject><subject>Lung cancer</subject><subject>Lung diseases</subject><subject>Lung Neoplasms - metabolism</subject><subject>Lung Neoplasms - mortality</subject><subject>Lung Neoplasms - pathology</subject><subject>Male</subject><subject>Markers</subject><subject>Medical diagnosis</subject><subject>Medical prognosis</subject><subject>Medicine</subject><subject>Middle Aged</subject><subject>Neoplasm Proteins - biosynthesis</subject><subject>Nitric-oxide synthase</subject><subject>Non-small cell lung cancer</subject><subject>Non-small cell lung carcinoma</subject><subject>Nuclear medicine</subject><subject>Oncology</subject><subject>Pathology</subject><subject>Patient outcomes</subject><subject>Patients</subject><subject>Radiation therapy</subject><subject>Radiotherapy</subject><subject>Regression analysis</subject><subject>Regression models</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Small cell lung carcinoma</subject><subject>Stat1 protein</subject><subject>Surgery</subject><subject>Survival Rate</subject><subject>Teaching 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Survival</topic><topic>DNA probes</topic><topic>Endocrinology</topic><topic>Epidermal growth factor receptors</topic><topic>ErbB-3 protein</topic><topic>ERCC1 protein</topic><topic>Feasibility studies</topic><topic>Female</topic><topic>Fibronectins</topic><topic>Fluorescence</topic><topic>Fluorescent indicators</topic><topic>Gene expression</topic><topic>Gene Expression Profiling</topic><topic>Gene Expression Regulation, Neoplastic</topic><topic>Genes</topic><topic>Genetic research</topic><topic>Humans</topic><topic>Kinases</topic><topic>Lung cancer</topic><topic>Lung diseases</topic><topic>Lung Neoplasms - metabolism</topic><topic>Lung Neoplasms - mortality</topic><topic>Lung Neoplasms - pathology</topic><topic>Male</topic><topic>Markers</topic><topic>Medical diagnosis</topic><topic>Medical prognosis</topic><topic>Medicine</topic><topic>Middle Aged</topic><topic>Neoplasm Proteins - biosynthesis</topic><topic>Nitric-oxide synthase</topic><topic>Non-small cell lung 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Maria</au><au>Szczesniak-Klusek, Bogna</au><au>Gawkowska-Suwinska, Marzena</au><au>Tukiendorf, Andrzej</au><au>Kozielski, Jerzy</au><au>Jarzab, Michal</au><au>Navarro, Alfons</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Gene expression from bronchoscopy obtained tumour samples as a predictor of outcome in advanced inoperable lung cancer</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2012-07-27</date><risdate>2012</risdate><volume>7</volume><issue>7</issue><spage>e41379</spage><epage>e41379</epage><pages>e41379-e41379</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Several studies have shown the prognostic and predictive potential of molecular markers in combined therapy for lung cancer. Most of them referred, however, to operable early stage NSCLC. The aim of the present study is to correlate the expression of multiple mRNA markers in bronchoscopy obtained cancer specimens with clinical outcome of advanced lung cancer.
Bronchoscopy cancer specimens were taken from 123 patients with radiological diagnosis of advanced lung tumor. Out of 123 patients 50 were diagnosed with squamous cell cancer, 17 with adenocarcinoma, 12 with NOS, 32 with SCLC and one with large cell neuroendocrinal cancer. In 11 patients other tumours were diagnosed. The group was heterogeneous with respect to clinical stage, performance of the patients and treatment. Quantitative real time PCR was carried out by ABI 7900 HT machine, with Universal Probe Library (Roche) fluorescent probes. The genes selected for the analysis were ERCC1, EGFR, BRCA1, CSF1, CA9, DUSP6, STAT1, ERBB3, MMD, FN1, and CDKN1B.
More than 50 ng of RNA (the amount considered sufficient for the analysis) was isolated in 82 out of 112 lung cancer specimens (73%), including 60/80 (75.0%) of NSCLC specimens and 22/32 (68,7%) of SCLC samples. The highest Cohen's κ coefficient for discrimination between small cell, squamous cell and adenocarcinoma was found for CDKN1B, CSF and EGFR1 (κ = 0.177, p = 0.0041). A multivariate Cox regression model has shown a significant impact of clinical stage (p<0.001, RR = 4.19), ERCC1 (p = 0.01, RR = 0.43) and CA9 (p = 0.03, RR = 2.11) expression on overall survival in a group of 60 patients with NSCLC.
These results show the feasibility of multiple gene expression analysis in bronchoscopy obtained cancer specimens as prognostic markers in radiotherapy and chemotherapy for advanced lung cancer. A limiting factor was relatively high proportion of samples from which sufficient amount of RNA could not be isolated.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>22848476</pmid><doi>10.1371/journal.pone.0041379</doi><tpages>e41379</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1932-6203 |
| ispartof | PloS one, 2012-07, Vol.7 (7), p.e41379-e41379 |
| issn | 1932-6203 1932-6203 |
| language | eng |
| recordid | cdi_plos_journals_1325521542 |
| source | MEDLINE; DOAJ Directory of Open Access Journals; Public Library of Science (PLoS); EZB-FREE-00999 freely available EZB journals; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Adenocarcinoma Adult Aged Analysis Biology BRCA1 protein Breast cancer Bronchoscopy Cancer Care and treatment Cerebrospinal fluid Chemotherapy Correlation analysis Cyclin-dependent kinases Disease-Free Survival DNA probes Endocrinology Epidermal growth factor receptors ErbB-3 protein ERCC1 protein Feasibility studies Female Fibronectins Fluorescence Fluorescent indicators Gene expression Gene Expression Profiling Gene Expression Regulation, Neoplastic Genes Genetic research Humans Kinases Lung cancer Lung diseases Lung Neoplasms - metabolism Lung Neoplasms - mortality Lung Neoplasms - pathology Male Markers Medical diagnosis Medical prognosis Medicine Middle Aged Neoplasm Proteins - biosynthesis Nitric-oxide synthase Non-small cell lung cancer Non-small cell lung carcinoma Nuclear medicine Oncology Pathology Patient outcomes Patients Radiation therapy Radiotherapy Regression analysis Regression models Ribonucleic acid RNA Small cell lung carcinoma Stat1 protein Surgery Survival Rate Teaching hospitals Tumors |
| title | Gene expression from bronchoscopy obtained tumour samples as a predictor of outcome in advanced inoperable lung cancer |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-11T14%3A00%3A59IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Gene%20expression%20from%20bronchoscopy%20obtained%20tumour%20samples%20as%20a%20predictor%20of%20outcome%20in%20advanced%20inoperable%20lung%20cancer&rft.jtitle=PloS%20one&rft.au=Suwinski,%20Rafal&rft.date=2012-07-27&rft.volume=7&rft.issue=7&rft.spage=e41379&rft.epage=e41379&rft.pages=e41379-e41379&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0041379&rft_dat=%3Cgale_plos_%3EA498244986%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1325521542&rft_id=info:pmid/22848476&rft_galeid=A498244986&rft_doaj_id=oai_doaj_org_article_60108ce85030437298a00094ca3c07b6&rfr_iscdi=true |