Variation in seed dormancy quantitative trait loci in Arabidopsis thaliana originating from one site
A Quantitative Trait Locus (QTL) analysis was performed using two novel Recombinant Inbred Line (RIL) populations, derived from the progeny between two Arabidopsis thaliana genotypes collected at the same site in Kyoto (Japan) crossed with the reference laboratory strain Landsberg erecta (Ler). We u...
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| creator | Silady, Rebecca A Effgen, Sigi Koornneef, Maarten Reymond, Matthieu |
| description | A Quantitative Trait Locus (QTL) analysis was performed using two novel Recombinant Inbred Line (RIL) populations, derived from the progeny between two Arabidopsis thaliana genotypes collected at the same site in Kyoto (Japan) crossed with the reference laboratory strain Landsberg erecta (Ler). We used these two RIL populations to determine the genetic basis of seed dormancy and flowering time, which are assumed to be the main traits controlling life history variation in Arabidopsis. The analysis revealed quantitative variation for seed dormancy that is associated with allelic variation at the seed dormancy QTL DOG1 (for Delay Of Germination 1) in one population and at DOG6 in both. These DOG QTL have been previously identified using mapping populations derived from accessions collected at different sites around the world. Genetic variation within a population may enhance its ability to respond accurately to variation within and between seasons. In contrast, variation for flowering time, which also segregated within each mapping population, is mainly governed by the same QTL. |
| doi_str_mv | 10.1371/journal.pone.0020886 |
| format | Article |
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We used these two RIL populations to determine the genetic basis of seed dormancy and flowering time, which are assumed to be the main traits controlling life history variation in Arabidopsis. The analysis revealed quantitative variation for seed dormancy that is associated with allelic variation at the seed dormancy QTL DOG1 (for Delay Of Germination 1) in one population and at DOG6 in both. These DOG QTL have been previously identified using mapping populations derived from accessions collected at different sites around the world. Genetic variation within a population may enhance its ability to respond accurately to variation within and between seasons. In contrast, variation for flowering time, which also segregated within each mapping population, is mainly governed by the same QTL.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0020886</identifier><identifier>PMID: 21738591</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Adaptation ; Analysis ; Arabidopsis ; Arabidopsis - genetics ; Arabidopsis - physiology ; Arabidopsis Proteins - genetics ; Arabidopsis thaliana ; Biology ; Chromosomes ; Dormancy ; Flowering ; flowering-time ; Gene mapping ; Genetic aspects ; Genetic crosses ; Genetic diversity ; Genotype & phenotype ; Genotypes ; Germination ; inbred line populations ; Inbreeding ; Laboratories ; Life history ; Loci ; Mapping ; Molecular biology ; natural variation ; Plant Dormancy - genetics ; Plant Dormancy - physiology ; Plants, Genetically Modified - genetics ; Plants, Genetically Modified - physiology ; Population ; Population genetics ; Populations ; Progeny ; Quantitative genetics ; Quantitative trait loci ; Quantitative Trait Loci - genetics ; recombinant ; Seeds ; Studies ; Variation</subject><ispartof>PloS one, 2011-06, Vol.6 (6), p.e20886-e20886</ispartof><rights>COPYRIGHT 2011 Public Library of Science</rights><rights>2011 Silady et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Silady et al. 2011</rights><rights>Wageningen University & Research</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c742t-23caee544439207d047a0dcd1d0978787429f86348f622b6aa2e548cd4fbf9a83</citedby><cites>FETCH-LOGICAL-c742t-23caee544439207d047a0dcd1d0978787429f86348f622b6aa2e548cd4fbf9a83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3127951/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3127951/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,728,781,785,865,886,2103,2929,23871,27929,27930,53796,53798</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21738591$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Kliebenstein, Daniel J.</contributor><creatorcontrib>Silady, Rebecca A</creatorcontrib><creatorcontrib>Effgen, Sigi</creatorcontrib><creatorcontrib>Koornneef, Maarten</creatorcontrib><creatorcontrib>Reymond, Matthieu</creatorcontrib><title>Variation in seed dormancy quantitative trait loci in Arabidopsis thaliana originating from one site</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>A Quantitative Trait Locus (QTL) analysis was performed using two novel Recombinant Inbred Line (RIL) populations, derived from the progeny between two Arabidopsis thaliana genotypes collected at the same site in Kyoto (Japan) crossed with the reference laboratory strain Landsberg erecta (Ler). We used these two RIL populations to determine the genetic basis of seed dormancy and flowering time, which are assumed to be the main traits controlling life history variation in Arabidopsis. The analysis revealed quantitative variation for seed dormancy that is associated with allelic variation at the seed dormancy QTL DOG1 (for Delay Of Germination 1) in one population and at DOG6 in both. These DOG QTL have been previously identified using mapping populations derived from accessions collected at different sites around the world. Genetic variation within a population may enhance its ability to respond accurately to variation within and between seasons. In contrast, variation for flowering time, which also segregated within each mapping population, is mainly governed by the same QTL.</description><subject>Adaptation</subject><subject>Analysis</subject><subject>Arabidopsis</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - physiology</subject><subject>Arabidopsis Proteins - genetics</subject><subject>Arabidopsis thaliana</subject><subject>Biology</subject><subject>Chromosomes</subject><subject>Dormancy</subject><subject>Flowering</subject><subject>flowering-time</subject><subject>Gene mapping</subject><subject>Genetic aspects</subject><subject>Genetic crosses</subject><subject>Genetic diversity</subject><subject>Genotype & phenotype</subject><subject>Genotypes</subject><subject>Germination</subject><subject>inbred line populations</subject><subject>Inbreeding</subject><subject>Laboratories</subject><subject>Life history</subject><subject>Loci</subject><subject>Mapping</subject><subject>Molecular biology</subject><subject>natural variation</subject><subject>Plant Dormancy - 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We used these two RIL populations to determine the genetic basis of seed dormancy and flowering time, which are assumed to be the main traits controlling life history variation in Arabidopsis. The analysis revealed quantitative variation for seed dormancy that is associated with allelic variation at the seed dormancy QTL DOG1 (for Delay Of Germination 1) in one population and at DOG6 in both. These DOG QTL have been previously identified using mapping populations derived from accessions collected at different sites around the world. Genetic variation within a population may enhance its ability to respond accurately to variation within and between seasons. In contrast, variation for flowering time, which also segregated within each mapping population, is mainly governed by the same QTL.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>21738591</pmid><doi>10.1371/journal.pone.0020886</doi><tpages>e20886</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Adaptation Analysis Arabidopsis Arabidopsis - genetics Arabidopsis - physiology Arabidopsis Proteins - genetics Arabidopsis thaliana Biology Chromosomes Dormancy Flowering flowering-time Gene mapping Genetic aspects Genetic crosses Genetic diversity Genotype & phenotype Genotypes Germination inbred line populations Inbreeding Laboratories Life history Loci Mapping Molecular biology natural variation Plant Dormancy - genetics Plant Dormancy - physiology Plants, Genetically Modified - genetics Plants, Genetically Modified - physiology Population Population genetics Populations Progeny Quantitative genetics Quantitative trait loci Quantitative Trait Loci - genetics recombinant Seeds Studies Variation |
| title | Variation in seed dormancy quantitative trait loci in Arabidopsis thaliana originating from one site |
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