Structural properties of the Caenorhabditis elegans neuronal network
Despite recent interest in reconstructing neuronal networks, complete wiring diagrams on the level of individual synapses remain scarce and the insights into function they can provide remain unclear. Even for Caenorhabditis elegans, whose neuronal network is relatively small and stereotypical from a...
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description | Despite recent interest in reconstructing neuronal networks, complete wiring diagrams on the level of individual synapses remain scarce and the insights into function they can provide remain unclear. Even for Caenorhabditis elegans, whose neuronal network is relatively small and stereotypical from animal to animal, published wiring diagrams are neither accurate nor complete and self-consistent. Using materials from White et al. and new electron micrographs we assemble whole, self-consistent gap junction and chemical synapse networks of hermaphrodite C. elegans. We propose a method to visualize the wiring diagram, which reflects network signal flow. We calculate statistical and topological properties of the network, such as degree distributions, synaptic multiplicities, and small-world properties, that help in understanding network signal propagation. We identify neurons that may play central roles in information processing, and network motifs that could serve as functional modules of the network. We explore propagation of neuronal activity in response to sensory or artificial stimulation using linear systems theory and find several activity patterns that could serve as substrates of previously described behaviors. Finally, we analyze the interaction between the gap junction and the chemical synapse networks. Since several statistical properties of the C. elegans network, such as multiplicity and motif distributions are similar to those found in mammalian neocortex, they likely point to general principles of neuronal networks. The wiring diagram reported here can help in understanding the mechanistic basis of behavior by generating predictions about future experiments involving genetic perturbations, laser ablations, or monitoring propagation of neuronal activity in response to stimulation. |
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Even for Caenorhabditis elegans, whose neuronal network is relatively small and stereotypical from animal to animal, published wiring diagrams are neither accurate nor complete and self-consistent. Using materials from White et al. and new electron micrographs we assemble whole, self-consistent gap junction and chemical synapse networks of hermaphrodite C. elegans. We propose a method to visualize the wiring diagram, which reflects network signal flow. We calculate statistical and topological properties of the network, such as degree distributions, synaptic multiplicities, and small-world properties, that help in understanding network signal propagation. We identify neurons that may play central roles in information processing, and network motifs that could serve as functional modules of the network. We explore propagation of neuronal activity in response to sensory or artificial stimulation using linear systems theory and find several activity patterns that could serve as substrates of previously described behaviors. Finally, we analyze the interaction between the gap junction and the chemical synapse networks. Since several statistical properties of the C. elegans network, such as multiplicity and motif distributions are similar to those found in mammalian neocortex, they likely point to general principles of neuronal networks. 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This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Varshney LR, Chen BL, Paniagua E, Hall DH, Chklovskii DB (2011) Structural Properties of the Caenorhabditis elegans Neuronal Network. 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Even for Caenorhabditis elegans, whose neuronal network is relatively small and stereotypical from animal to animal, published wiring diagrams are neither accurate nor complete and self-consistent. Using materials from White et al. and new electron micrographs we assemble whole, self-consistent gap junction and chemical synapse networks of hermaphrodite C. elegans. We propose a method to visualize the wiring diagram, which reflects network signal flow. We calculate statistical and topological properties of the network, such as degree distributions, synaptic multiplicities, and small-world properties, that help in understanding network signal propagation. We identify neurons that may play central roles in information processing, and network motifs that could serve as functional modules of the network. We explore propagation of neuronal activity in response to sensory or artificial stimulation using linear systems theory and find several activity patterns that could serve as substrates of previously described behaviors. Finally, we analyze the interaction between the gap junction and the chemical synapse networks. Since several statistical properties of the C. elegans network, such as multiplicity and motif distributions are similar to those found in mammalian neocortex, they likely point to general principles of neuronal networks. The wiring diagram reported here can help in understanding the mechanistic basis of behavior by generating predictions about future experiments involving genetic perturbations, laser ablations, or monitoring propagation of neuronal activity in response to stimulation.</description><subject>Animals</subject><subject>Behavior</subject><subject>Caenorhabditis elegans</subject><subject>Caenorhabditis elegans - anatomy & histology</subject><subject>Caenorhabditis elegans - physiology</subject><subject>Computational Biology</subject><subject>Experiments</subject><subject>Gap Junctions - physiology</subject><subject>Gap Junctions - ultrastructure</subject><subject>Genetic aspects</subject><subject>Hypotheses</subject><subject>Interneurons - cytology</subject><subject>Interneurons - physiology</subject><subject>Mathematical Concepts</subject><subject>Models, Anatomic</subject><subject>Models, Neurological</subject><subject>Motor Neurons - cytology</subject><subject>Motor Neurons - physiology</subject><subject>Nematoda</subject><subject>Nematodes</subject><subject>Nerve Net - anatomy & histology</subject><subject>Nerve Net - physiology</subject><subject>Neural circuitry</subject><subject>Neural networks</subject><subject>Neurons</subject><subject>Neuroscience/Motor Systems</subject><subject>Neuroscience/Sensory Systems</subject><subject>Neuroscience/Theoretical Neuroscience</subject><subject>Neurosciences</subject><subject>Propagation</subject><subject>Sensory Receptor Cells - cytology</subject><subject>Sensory Receptor Cells - physiology</subject><subject>Studies</subject><subject>Synapses - physiology</subject><subject>Synapses - ultrastructure</subject><subject>System theory</subject><subject>Systems Biology</subject><issn>1553-7358</issn><issn>1553-734X</issn><issn>1553-7358</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>DOA</sourceid><recordid>eNqVksFu1DAQhiMEoqXwBghyQxx2sePYji9I1VJgpQokCmfLdsZZL9k4tR0ob4-3m1bdE0I-eDT-5h_N7ymKlxgtMeH43dZPYVD9cjTaLTFCGDH2qDjFlJIFJ7R5_CA-KZ7FuEUoh4I9LU4qTFAtCDotPlylMJk0BdWXY_AjhOQglt6WaQPlSsHgw0bp1iUXS-ihU0MsB5iCz71zkH778PN58cSqPsKL-T4rfny8-L76vLj8-mm9Or9cGI6qtNCYC8u1IZhoyytSUYQomNYYzCyqrRBG20a0tqqBcMUFE1ojpU1NMK4qTs6K1wfdsfdRzgZEiQmuKeI1EplYH4jWq60cg9up8Ed65eRtwodOqjyh6UEyxTQikFvQuq61aUyjBVWt4FSYhu-13s_dJr2D1sCQsktHoscvg9vIzv-SBBFCWJUF3swCwV9PEJPcuWig79UAfopSII7p3oZ_kg29nZ-zTC4PZKfyDG6wPrc2-bSwc8YPYF3On2drGedZPhe8PSrITIKb1KkpRrm--vYf7Jdjtj6wJvgYA9h7YzCS-wW9-x-5X1A5L2gue_XQ1Puiu40kfwHHruKg</recordid><startdate>20110203</startdate><enddate>20110203</enddate><creator>Varshney, Lav R</creator><creator>Chen, Beth L</creator><creator>Paniagua, Eric</creator><creator>Hall, David H</creator><creator>Chklovskii, Dmitri B</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISN</scope><scope>ISR</scope><scope>7X8</scope><scope>7TK</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20110203</creationdate><title>Structural properties of the Caenorhabditis elegans neuronal network</title><author>Varshney, Lav R ; Chen, Beth L ; Paniagua, Eric ; Hall, David H ; Chklovskii, Dmitri B</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c702t-b179f7bc313bf72325005ecdcc16f04f99cbf89df24e37a7969bb0abc43112273</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Animals</topic><topic>Behavior</topic><topic>Caenorhabditis elegans</topic><topic>Caenorhabditis elegans - anatomy & histology</topic><topic>Caenorhabditis elegans - physiology</topic><topic>Computational Biology</topic><topic>Experiments</topic><topic>Gap Junctions - physiology</topic><topic>Gap Junctions - ultrastructure</topic><topic>Genetic aspects</topic><topic>Hypotheses</topic><topic>Interneurons - cytology</topic><topic>Interneurons - physiology</topic><topic>Mathematical Concepts</topic><topic>Models, Anatomic</topic><topic>Models, Neurological</topic><topic>Motor Neurons - cytology</topic><topic>Motor Neurons - physiology</topic><topic>Nematoda</topic><topic>Nematodes</topic><topic>Nerve Net - anatomy & histology</topic><topic>Nerve Net - physiology</topic><topic>Neural circuitry</topic><topic>Neural networks</topic><topic>Neurons</topic><topic>Neuroscience/Motor Systems</topic><topic>Neuroscience/Sensory Systems</topic><topic>Neuroscience/Theoretical Neuroscience</topic><topic>Neurosciences</topic><topic>Propagation</topic><topic>Sensory Receptor Cells - cytology</topic><topic>Sensory Receptor Cells - physiology</topic><topic>Studies</topic><topic>Synapses - physiology</topic><topic>Synapses - ultrastructure</topic><topic>System theory</topic><topic>Systems Biology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Varshney, Lav R</creatorcontrib><creatorcontrib>Chen, Beth L</creatorcontrib><creatorcontrib>Paniagua, Eric</creatorcontrib><creatorcontrib>Hall, David H</creatorcontrib><creatorcontrib>Chklovskii, Dmitri B</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Canada</collection><collection>Gale In Context: Science</collection><collection>MEDLINE - Academic</collection><collection>Neurosciences Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PLoS computational biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Varshney, Lav R</au><au>Chen, Beth L</au><au>Paniagua, Eric</au><au>Hall, David H</au><au>Chklovskii, Dmitri B</au><au>Sporns, Olaf</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Structural properties of the Caenorhabditis elegans neuronal network</atitle><jtitle>PLoS computational biology</jtitle><addtitle>PLoS Comput Biol</addtitle><date>2011-02-03</date><risdate>2011</risdate><volume>7</volume><issue>2</issue><spage>e1001066</spage><epage>e1001066</epage><pages>e1001066-e1001066</pages><issn>1553-7358</issn><issn>1553-734X</issn><eissn>1553-7358</eissn><abstract>Despite recent interest in reconstructing neuronal networks, complete wiring diagrams on the level of individual synapses remain scarce and the insights into function they can provide remain unclear. Even for Caenorhabditis elegans, whose neuronal network is relatively small and stereotypical from animal to animal, published wiring diagrams are neither accurate nor complete and self-consistent. Using materials from White et al. and new electron micrographs we assemble whole, self-consistent gap junction and chemical synapse networks of hermaphrodite C. elegans. We propose a method to visualize the wiring diagram, which reflects network signal flow. We calculate statistical and topological properties of the network, such as degree distributions, synaptic multiplicities, and small-world properties, that help in understanding network signal propagation. We identify neurons that may play central roles in information processing, and network motifs that could serve as functional modules of the network. We explore propagation of neuronal activity in response to sensory or artificial stimulation using linear systems theory and find several activity patterns that could serve as substrates of previously described behaviors. Finally, we analyze the interaction between the gap junction and the chemical synapse networks. Since several statistical properties of the C. elegans network, such as multiplicity and motif distributions are similar to those found in mammalian neocortex, they likely point to general principles of neuronal networks. The wiring diagram reported here can help in understanding the mechanistic basis of behavior by generating predictions about future experiments involving genetic perturbations, laser ablations, or monitoring propagation of neuronal activity in response to stimulation.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>21304930</pmid><doi>10.1371/journal.pcbi.1001066</doi><oa>free_for_read</oa></addata></record> |
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subjects | Animals Behavior Caenorhabditis elegans Caenorhabditis elegans - anatomy & histology Caenorhabditis elegans - physiology Computational Biology Experiments Gap Junctions - physiology Gap Junctions - ultrastructure Genetic aspects Hypotheses Interneurons - cytology Interneurons - physiology Mathematical Concepts Models, Anatomic Models, Neurological Motor Neurons - cytology Motor Neurons - physiology Nematoda Nematodes Nerve Net - anatomy & histology Nerve Net - physiology Neural circuitry Neural networks Neurons Neuroscience/Motor Systems Neuroscience/Sensory Systems Neuroscience/Theoretical Neuroscience Neurosciences Propagation Sensory Receptor Cells - cytology Sensory Receptor Cells - physiology Studies Synapses - physiology Synapses - ultrastructure System theory Systems Biology |
title | Structural properties of the Caenorhabditis elegans neuronal network |
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