Time series analysis of onchocerciasis data from Mexico: a trend towards elimination
In Latin America, there are 13 geographically isolated endemic foci distributed among Mexico, Guatemala, Colombia, Venezuela, Brazil and Ecuador. The communities of the three endemic foci found within Mexico have been receiving ivermectin treatment since 1989. In this study, we predicted the trend o...
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creator | Lara-Ramírez, Edgar E Rodríguez-Pérez, Mario A Pérez-Rodríguez, Miguel A Adeleke, Monsuru A Orozco-Algarra, María E Arrendondo-Jiménez, Juan I Guo, Xianwu |
description | In Latin America, there are 13 geographically isolated endemic foci distributed among Mexico, Guatemala, Colombia, Venezuela, Brazil and Ecuador. The communities of the three endemic foci found within Mexico have been receiving ivermectin treatment since 1989. In this study, we predicted the trend of occurrence of cases in Mexico by applying time series analysis to monthly onchocerciasis data reported by the Mexican Secretariat of Health between 1988 and 2011 using the software R.
A total of 15,584 cases were reported in Mexico from 1988 to 2011. The data of onchocerciasis cases are mainly from the main endemic foci of Chiapas and Oaxaca. The last case in Oaxaca was reported in 1998, but new cases were reported in the Chiapas foci up to 2011. Time series analysis performed for the foci in Mexico showed a decreasing trend of the disease over time. The best-fitted models with the smallest Akaike Information Criterion (AIC) were Auto-Regressive Integrated Moving Average (ARIMA) models, which were used to predict the tendency of onchocerciasis cases for two years ahead. According to the ARIMA models predictions, the cases in very low number (below 1) are expected for the disease between 2012 and 2013 in Chiapas, the last endemic region in Mexico.
The endemic regions of Mexico evolved from high onchocerciasis-endemic states to the interruption of transmission due to the strategies followed by the MSH, based on treatment with ivermectin. The extremely low level of expected cases as predicted by ARIMA models for the next two years suggest that the onchocerciasis is being eliminated in Mexico. To our knowledge, it is the first study utilizing time series for predicting case dynamics of onchocerciasis, which could be used as a benchmark during monitoring and post-treatment surveillance. |
doi_str_mv | 10.1371/journal.pntd.0002033 |
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A total of 15,584 cases were reported in Mexico from 1988 to 2011. The data of onchocerciasis cases are mainly from the main endemic foci of Chiapas and Oaxaca. The last case in Oaxaca was reported in 1998, but new cases were reported in the Chiapas foci up to 2011. Time series analysis performed for the foci in Mexico showed a decreasing trend of the disease over time. The best-fitted models with the smallest Akaike Information Criterion (AIC) were Auto-Regressive Integrated Moving Average (ARIMA) models, which were used to predict the tendency of onchocerciasis cases for two years ahead. According to the ARIMA models predictions, the cases in very low number (below 1) are expected for the disease between 2012 and 2013 in Chiapas, the last endemic region in Mexico.
The endemic regions of Mexico evolved from high onchocerciasis-endemic states to the interruption of transmission due to the strategies followed by the MSH, based on treatment with ivermectin. The extremely low level of expected cases as predicted by ARIMA models for the next two years suggest that the onchocerciasis is being eliminated in Mexico. To our knowledge, it is the first study utilizing time series for predicting case dynamics of onchocerciasis, which could be used as a benchmark during monitoring and post-treatment surveillance.</description><identifier>ISSN: 1935-2735</identifier><identifier>ISSN: 1935-2727</identifier><identifier>EISSN: 1935-2735</identifier><identifier>DOI: 10.1371/journal.pntd.0002033</identifier><identifier>PMID: 23459370</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Anthelmintics - therapeutic use ; Confidence intervals ; Disease ; Disease Eradication ; Distribution ; Dosage and administration ; Drug therapy ; Economic models ; Endemic Diseases ; Humans ; Incidence ; Ivermectin ; Ivermectin - therapeutic use ; Medicine ; Mexico - epidemiology ; Onchocerciasis ; Onchocerciasis - drug therapy ; Onchocerciasis - epidemiology ; Prevalence ; Statistical methods ; Studies ; Time series ; Tropical diseases</subject><ispartof>PLoS neglected tropical diseases, 2013-02, Vol.7 (2), p.e2033-e2033</ispartof><rights>COPYRIGHT 2013 Public Library of Science</rights><rights>2013 Lara-Ramírez et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Lara-Ramírez EE, Rodríguez-Pérez MA, Pérez-Rodríguez MA, Adeleke MA, Orozco-Algarra ME, et al. (2013) Time Series Analysis of Onchocerciasis Data from Mexico: A Trend towards Elimination. PLoS Negl Trop Dis 7(2): e2033. doi:10.1371/journal.pntd.0002033</rights><rights>2013 Lara-Ramírez et al 2013 Lara-Ramírez et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c690t-8e628177386427bcc91aa10e0761f49a612aa8f665aa9e783b94aff6258b8dc23</citedby><cites>FETCH-LOGICAL-c690t-8e628177386427bcc91aa10e0761f49a612aa8f665aa9e783b94aff6258b8dc23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3573083/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3573083/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2095,2914,23846,27903,27904,53770,53772,79347,79348</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23459370$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Basáñez, María-Gloria</contributor><creatorcontrib>Lara-Ramírez, Edgar E</creatorcontrib><creatorcontrib>Rodríguez-Pérez, Mario A</creatorcontrib><creatorcontrib>Pérez-Rodríguez, Miguel A</creatorcontrib><creatorcontrib>Adeleke, Monsuru A</creatorcontrib><creatorcontrib>Orozco-Algarra, María E</creatorcontrib><creatorcontrib>Arrendondo-Jiménez, Juan I</creatorcontrib><creatorcontrib>Guo, Xianwu</creatorcontrib><title>Time series analysis of onchocerciasis data from Mexico: a trend towards elimination</title><title>PLoS neglected tropical diseases</title><addtitle>PLoS Negl Trop Dis</addtitle><description>In Latin America, there are 13 geographically isolated endemic foci distributed among Mexico, Guatemala, Colombia, Venezuela, Brazil and Ecuador. The communities of the three endemic foci found within Mexico have been receiving ivermectin treatment since 1989. In this study, we predicted the trend of occurrence of cases in Mexico by applying time series analysis to monthly onchocerciasis data reported by the Mexican Secretariat of Health between 1988 and 2011 using the software R.
A total of 15,584 cases were reported in Mexico from 1988 to 2011. The data of onchocerciasis cases are mainly from the main endemic foci of Chiapas and Oaxaca. The last case in Oaxaca was reported in 1998, but new cases were reported in the Chiapas foci up to 2011. Time series analysis performed for the foci in Mexico showed a decreasing trend of the disease over time. The best-fitted models with the smallest Akaike Information Criterion (AIC) were Auto-Regressive Integrated Moving Average (ARIMA) models, which were used to predict the tendency of onchocerciasis cases for two years ahead. According to the ARIMA models predictions, the cases in very low number (below 1) are expected for the disease between 2012 and 2013 in Chiapas, the last endemic region in Mexico.
The endemic regions of Mexico evolved from high onchocerciasis-endemic states to the interruption of transmission due to the strategies followed by the MSH, based on treatment with ivermectin. The extremely low level of expected cases as predicted by ARIMA models for the next two years suggest that the onchocerciasis is being eliminated in Mexico. 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therapeutic use</topic><topic>Confidence intervals</topic><topic>Disease</topic><topic>Disease Eradication</topic><topic>Distribution</topic><topic>Dosage and administration</topic><topic>Drug therapy</topic><topic>Economic models</topic><topic>Endemic Diseases</topic><topic>Humans</topic><topic>Incidence</topic><topic>Ivermectin</topic><topic>Ivermectin - therapeutic use</topic><topic>Medicine</topic><topic>Mexico - epidemiology</topic><topic>Onchocerciasis</topic><topic>Onchocerciasis - drug therapy</topic><topic>Onchocerciasis - epidemiology</topic><topic>Prevalence</topic><topic>Statistical methods</topic><topic>Studies</topic><topic>Time series</topic><topic>Tropical diseases</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lara-Ramírez, Edgar E</creatorcontrib><creatorcontrib>Rodríguez-Pérez, Mario A</creatorcontrib><creatorcontrib>Pérez-Rodríguez, Miguel A</creatorcontrib><creatorcontrib>Adeleke, Monsuru A</creatorcontrib><creatorcontrib>Orozco-Algarra, María E</creatorcontrib><creatorcontrib>Arrendondo-Jiménez, Juan I</creatorcontrib><creatorcontrib>Guo, Xianwu</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Health and Safety Science Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PLoS neglected tropical diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lara-Ramírez, Edgar E</au><au>Rodríguez-Pérez, Mario A</au><au>Pérez-Rodríguez, Miguel A</au><au>Adeleke, Monsuru A</au><au>Orozco-Algarra, María E</au><au>Arrendondo-Jiménez, Juan I</au><au>Guo, Xianwu</au><au>Basáñez, María-Gloria</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Time series analysis of onchocerciasis data from Mexico: a trend towards elimination</atitle><jtitle>PLoS neglected tropical diseases</jtitle><addtitle>PLoS Negl Trop Dis</addtitle><date>2013-02-01</date><risdate>2013</risdate><volume>7</volume><issue>2</issue><spage>e2033</spage><epage>e2033</epage><pages>e2033-e2033</pages><issn>1935-2735</issn><issn>1935-2727</issn><eissn>1935-2735</eissn><abstract>In Latin America, there are 13 geographically isolated endemic foci distributed among Mexico, Guatemala, Colombia, Venezuela, Brazil and Ecuador. The communities of the three endemic foci found within Mexico have been receiving ivermectin treatment since 1989. In this study, we predicted the trend of occurrence of cases in Mexico by applying time series analysis to monthly onchocerciasis data reported by the Mexican Secretariat of Health between 1988 and 2011 using the software R.
A total of 15,584 cases were reported in Mexico from 1988 to 2011. The data of onchocerciasis cases are mainly from the main endemic foci of Chiapas and Oaxaca. The last case in Oaxaca was reported in 1998, but new cases were reported in the Chiapas foci up to 2011. Time series analysis performed for the foci in Mexico showed a decreasing trend of the disease over time. The best-fitted models with the smallest Akaike Information Criterion (AIC) were Auto-Regressive Integrated Moving Average (ARIMA) models, which were used to predict the tendency of onchocerciasis cases for two years ahead. According to the ARIMA models predictions, the cases in very low number (below 1) are expected for the disease between 2012 and 2013 in Chiapas, the last endemic region in Mexico.
The endemic regions of Mexico evolved from high onchocerciasis-endemic states to the interruption of transmission due to the strategies followed by the MSH, based on treatment with ivermectin. The extremely low level of expected cases as predicted by ARIMA models for the next two years suggest that the onchocerciasis is being eliminated in Mexico. To our knowledge, it is the first study utilizing time series for predicting case dynamics of onchocerciasis, which could be used as a benchmark during monitoring and post-treatment surveillance.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>23459370</pmid><doi>10.1371/journal.pntd.0002033</doi><oa>free_for_read</oa></addata></record> |
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subjects | Anthelmintics - therapeutic use Confidence intervals Disease Disease Eradication Distribution Dosage and administration Drug therapy Economic models Endemic Diseases Humans Incidence Ivermectin Ivermectin - therapeutic use Medicine Mexico - epidemiology Onchocerciasis Onchocerciasis - drug therapy Onchocerciasis - epidemiology Prevalence Statistical methods Studies Time series Tropical diseases |
title | Time series analysis of onchocerciasis data from Mexico: a trend towards elimination |
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