Effect of host species on the distribution of mutational fitness effects for an RNA virus
Knowledge about the distribution of mutational fitness effects (DMFE) is essential for many evolutionary models. In recent years, the properties of the DMFE have been carefully described for some microorganisms. In most cases, however, this information has been obtained only for a single environment...
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description | Knowledge about the distribution of mutational fitness effects (DMFE) is essential for many evolutionary models. In recent years, the properties of the DMFE have been carefully described for some microorganisms. In most cases, however, this information has been obtained only for a single environment, and very few studies have explored the effect that environmental variation may have on the DMFE. Environmental effects are particularly relevant for the evolution of multi-host parasites and thus for the emergence of new pathogens. Here we characterize the DMFE for a collection of twenty single-nucleotide substitution mutants of Tobacco etch potyvirus (TEV) across a set of eight host environments. Five of these host species were naturally infected by TEV, all belonging to family Solanaceae, whereas the other three were partially susceptible hosts belonging to three other plant families. First, we found a significant virus genotype-by-host species interaction, which was sustained by differences in genetic variance for fitness and the pleiotropic effect of mutations among hosts. Second, we found that the DMFEs were markedly different between Solanaceae and non-Solanaceae hosts. Exposure of TEV genotypes to non-Solanaceae hosts led to a large reduction of mean viral fitness, while the variance remained constant and skewness increased towards the right tail. Within the Solanaceae hosts, the distribution contained an excess of deleterious mutations, whereas for the non-Solanaceae the fraction of beneficial mutations was significantly larger. All together, this result suggests that TEV may easily broaden its host range and improve fitness in new hosts, and that knowledge about the DMFE in the natural host does not allow for making predictions about its properties in an alternative host. |
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Second, we found that the DMFEs were markedly different between Solanaceae and non-Solanaceae hosts. Exposure of TEV genotypes to non-Solanaceae hosts led to a large reduction of mean viral fitness, while the variance remained constant and skewness increased towards the right tail. Within the Solanaceae hosts, the distribution contained an excess of deleterious mutations, whereas for the non-Solanaceae the fraction of beneficial mutations was significantly larger. 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This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Lali? J, Cuevas JM, Elena SF (2011) Effect of Host Species on the Distribution of Mutational Fitness Effects for an RNA Virus. 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In recent years, the properties of the DMFE have been carefully described for some microorganisms. In most cases, however, this information has been obtained only for a single environment, and very few studies have explored the effect that environmental variation may have on the DMFE. Environmental effects are particularly relevant for the evolution of multi-host parasites and thus for the emergence of new pathogens. Here we characterize the DMFE for a collection of twenty single-nucleotide substitution mutants of Tobacco etch potyvirus (TEV) across a set of eight host environments. Five of these host species were naturally infected by TEV, all belonging to family Solanaceae, whereas the other three were partially susceptible hosts belonging to three other plant families. First, we found a significant virus genotype-by-host species interaction, which was sustained by differences in genetic variance for fitness and the pleiotropic effect of mutations among hosts. Second, we found that the DMFEs were markedly different between Solanaceae and non-Solanaceae hosts. Exposure of TEV genotypes to non-Solanaceae hosts led to a large reduction of mean viral fitness, while the variance remained constant and skewness increased towards the right tail. Within the Solanaceae hosts, the distribution contained an excess of deleterious mutations, whereas for the non-Solanaceae the fraction of beneficial mutations was significantly larger. All together, this result suggests that TEV may easily broaden its host range and improve fitness in new hosts, and that knowledge about the DMFE in the natural host does not allow for making predictions about its properties in an alternative host.</description><subject>Amaranthaceae - genetics</subject><subject>Amaranthaceae - virology</subject><subject>Asteraceae - genetics</subject><subject>Asteraceae - virology</subject><subject>Biological Evolution</subject><subject>Biology</subject><subject>Experiments</subject><subject>Gene mutations</subject><subject>Generalized linear models</subject><subject>Genetic Fitness</subject><subject>Genetic Pleiotropy</subject><subject>Genotype</subject><subject>Host Specificity - genetics</subject><subject>Models, Genetic</subject><subject>Mutation</subject><subject>Nicotiana - genetics</subject><subject>Nicotiana - virology</subject><subject>Physiological aspects</subject><subject>Plant Diseases - genetics</subject><subject>Plant Diseases - virology</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Potyvirus - genetics</subject><subject>Potyvirus - pathogenicity</subject><subject>RNA viruses</subject><subject>Solanaceae - genetics</subject><subject>Solanaceae - virology</subject><subject>Virulence - genetics</subject><subject>Viruses</subject><issn>1553-7404</issn><issn>1553-7390</issn><issn>1553-7404</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>DOA</sourceid><recordid>eNqVk1trFDEUxwdRbK1-A9GAoPiwa66TmRdhKVUXSgv1Aj6FTOZkN8vsZJtkin57s5eWHfBByUNOTn7nn-ScnKJ4SfCUMEk-rPwQet1NNwvopwRjymT1qDglQrCJ5Jg_PrJPimcxrjBmoqrl0-KEUkIFr-Vp8fPCWjAJeYuWPiYUN2AcROR7lJaAWhdTcM2QXHZkZj0kvbV1h6xLPcSIYCcQkfUB6R7dXM3QnQtDfF48sbqL8OIwnxXfP118O_8yubz-PD-fXU6MLFmaGM0kk1iCaGzDsGxoyS0tiahtXnNSiVJgUjNrjJUtaW1VGmgYSMxoVYmGnRWv97qbzkd1yEpUhBEmuBA1zsR8T7Rer9QmuLUOv5XXTu0cPiyUDsmZDpRusDSSiJIC51w2lcW1rTnjUNdlw2nW-ng4bWjW0BroU9DdSHS807ulWvg7xSipSyyzwLuDQPC3A8Sk1i4a6Drdgx-iqnF-maRcZPLNnlzofDPXW58FzZZWM5pzRgQvWaamf6HyaGHtjO_BuuwfBbwfBWQmwa-00EOMav715j_Yq39nr3-M2bdH7BJ0l5bRd7tvFscg34Mm-BgD2IdME6y2bXBfcLVtA3Vogxz26rhKD0H3_579AaTIAPc</recordid><startdate>20111101</startdate><enddate>20111101</enddate><creator>Lalić, Jasna</creator><creator>Cuevas, José M</creator><creator>Elena, Santiago F</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISN</scope><scope>ISR</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20111101</creationdate><title>Effect of host species on the distribution of mutational fitness effects for an RNA virus</title><author>Lalić, Jasna ; Cuevas, José M ; Elena, Santiago F</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c763t-ca373707e5bfb307b264f26159ffb34185650193fccf7d1df86ceb3e7032885b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Amaranthaceae - genetics</topic><topic>Amaranthaceae - virology</topic><topic>Asteraceae - genetics</topic><topic>Asteraceae - virology</topic><topic>Biological Evolution</topic><topic>Biology</topic><topic>Experiments</topic><topic>Gene mutations</topic><topic>Generalized linear models</topic><topic>Genetic Fitness</topic><topic>Genetic Pleiotropy</topic><topic>Genotype</topic><topic>Host Specificity - genetics</topic><topic>Models, Genetic</topic><topic>Mutation</topic><topic>Nicotiana - genetics</topic><topic>Nicotiana - virology</topic><topic>Physiological aspects</topic><topic>Plant Diseases - genetics</topic><topic>Plant Diseases - virology</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Potyvirus - genetics</topic><topic>Potyvirus - pathogenicity</topic><topic>RNA viruses</topic><topic>Solanaceae - genetics</topic><topic>Solanaceae - virology</topic><topic>Virulence - genetics</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lalić, Jasna</creatorcontrib><creatorcontrib>Cuevas, José M</creatorcontrib><creatorcontrib>Elena, Santiago F</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Canada</collection><collection>Gale In Context: Science</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PLoS genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lalić, Jasna</au><au>Cuevas, José M</au><au>Elena, Santiago F</au><au>Guttman, David S.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Effect of host species on the distribution of mutational fitness effects for an RNA virus</atitle><jtitle>PLoS genetics</jtitle><addtitle>PLoS Genet</addtitle><date>2011-11-01</date><risdate>2011</risdate><volume>7</volume><issue>11</issue><spage>e1002378</spage><epage>e1002378</epage><pages>e1002378-e1002378</pages><issn>1553-7404</issn><issn>1553-7390</issn><eissn>1553-7404</eissn><abstract>Knowledge about the distribution of mutational fitness effects (DMFE) is essential for many evolutionary models. In recent years, the properties of the DMFE have been carefully described for some microorganisms. In most cases, however, this information has been obtained only for a single environment, and very few studies have explored the effect that environmental variation may have on the DMFE. Environmental effects are particularly relevant for the evolution of multi-host parasites and thus for the emergence of new pathogens. Here we characterize the DMFE for a collection of twenty single-nucleotide substitution mutants of Tobacco etch potyvirus (TEV) across a set of eight host environments. Five of these host species were naturally infected by TEV, all belonging to family Solanaceae, whereas the other three were partially susceptible hosts belonging to three other plant families. First, we found a significant virus genotype-by-host species interaction, which was sustained by differences in genetic variance for fitness and the pleiotropic effect of mutations among hosts. Second, we found that the DMFEs were markedly different between Solanaceae and non-Solanaceae hosts. Exposure of TEV genotypes to non-Solanaceae hosts led to a large reduction of mean viral fitness, while the variance remained constant and skewness increased towards the right tail. Within the Solanaceae hosts, the distribution contained an excess of deleterious mutations, whereas for the non-Solanaceae the fraction of beneficial mutations was significantly larger. All together, this result suggests that TEV may easily broaden its host range and improve fitness in new hosts, and that knowledge about the DMFE in the natural host does not allow for making predictions about its properties in an alternative host.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>22125497</pmid><doi>10.1371/journal.pgen.1002378</doi><oa>free_for_read</oa></addata></record> |
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subjects | Amaranthaceae - genetics Amaranthaceae - virology Asteraceae - genetics Asteraceae - virology Biological Evolution Biology Experiments Gene mutations Generalized linear models Genetic Fitness Genetic Pleiotropy Genotype Host Specificity - genetics Models, Genetic Mutation Nicotiana - genetics Nicotiana - virology Physiological aspects Plant Diseases - genetics Plant Diseases - virology Polymorphism, Single Nucleotide Potyvirus - genetics Potyvirus - pathogenicity RNA viruses Solanaceae - genetics Solanaceae - virology Virulence - genetics Viruses |
title | Effect of host species on the distribution of mutational fitness effects for an RNA virus |
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