Rhythmic dynamics and synchronization via dimensionality reduction: application to human gait
Reliable characterization of locomotor dynamics of human walking is vital to understanding the neuromuscular control of human locomotion and disease diagnosis. However, the inherent oscillation and ubiquity of noise in such non-strictly periodic signals pose great challenges to current methodologies...
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description | Reliable characterization of locomotor dynamics of human walking is vital to understanding the neuromuscular control of human locomotion and disease diagnosis. However, the inherent oscillation and ubiquity of noise in such non-strictly periodic signals pose great challenges to current methodologies. To this end, we exploit the state-of-the-art technology in pattern recognition and, specifically, dimensionality reduction techniques, and propose to reconstruct and characterize the dynamics accurately on the cycle scale of the signal. This is achieved by deriving a low-dimensional representation of the cycles through global optimization, which effectively preserves the topology of the cycles that are embedded in a high-dimensional Euclidian space. Our approach demonstrates a clear advantage in capturing the intrinsic dynamics and probing the subtle synchronization patterns from uni/bivariate oscillatory signals over traditional methods. Application to human gait data for healthy subjects and diabetics reveals a significant difference in the dynamics of ankle movements and ankle-knee coordination, but not in knee movements. These results indicate that the impaired sensory feedback from the feet due to diabetes does not influence the knee movement in general, and that normal human walking is not critically dependent on the feedback from the peripheral nervous system. |
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National Energy Research Scientific Computing Center (NERSC) ; Kurths, Jürgen</creatorcontrib><description>Reliable characterization of locomotor dynamics of human walking is vital to understanding the neuromuscular control of human locomotion and disease diagnosis. However, the inherent oscillation and ubiquity of noise in such non-strictly periodic signals pose great challenges to current methodologies. To this end, we exploit the state-of-the-art technology in pattern recognition and, specifically, dimensionality reduction techniques, and propose to reconstruct and characterize the dynamics accurately on the cycle scale of the signal. This is achieved by deriving a low-dimensional representation of the cycles through global optimization, which effectively preserves the topology of the cycles that are embedded in a high-dimensional Euclidian space. Our approach demonstrates a clear advantage in capturing the intrinsic dynamics and probing the subtle synchronization patterns from uni/bivariate oscillatory signals over traditional methods. Application to human gait data for healthy subjects and diabetics reveals a significant difference in the dynamics of ankle movements and ankle-knee coordination, but not in knee movements. 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This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Citation: Zhang J, Zhang K, Feng J, Small M (2010) Rhythmic Dynamics and Synchronization via Dimensionality Reduction: Application to Human Gait. 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National Energy Research Scientific Computing Center (NERSC)</creatorcontrib><title>Rhythmic dynamics and synchronization via dimensionality reduction: application to human gait</title><title>PLoS computational biology</title><addtitle>PLoS Comput Biol</addtitle><description>Reliable characterization of locomotor dynamics of human walking is vital to understanding the neuromuscular control of human locomotion and disease diagnosis. However, the inherent oscillation and ubiquity of noise in such non-strictly periodic signals pose great challenges to current methodologies. To this end, we exploit the state-of-the-art technology in pattern recognition and, specifically, dimensionality reduction techniques, and propose to reconstruct and characterize the dynamics accurately on the cycle scale of the signal. This is achieved by deriving a low-dimensional representation of the cycles through global optimization, which effectively preserves the topology of the cycles that are embedded in a high-dimensional Euclidian space. Our approach demonstrates a clear advantage in capturing the intrinsic dynamics and probing the subtle synchronization patterns from uni/bivariate oscillatory signals over traditional methods. Application to human gait data for healthy subjects and diabetics reveals a significant difference in the dynamics of ankle movements and ankle-knee coordination, but not in knee movements. These results indicate that the impaired sensory feedback from the feet due to diabetes does not influence the knee movement in general, and that normal human walking is not critically dependent on the feedback from the peripheral nervous system.</description><subject>Ankle</subject><subject>Ankle - physiology</subject><subject>BASIC BIOLOGICAL SCIENCES</subject><subject>Biochemistry & Molecular Biology</subject><subject>Biomechanical Phenomena</subject><subject>Blood pressure</subject><subject>Computational Biology - methods</subject><subject>Feedback</subject><subject>Fourier analysis</subject><subject>Fourier transforms</subject><subject>Gait - physiology</subject><subject>Humans</subject><subject>Knee - physiology</subject><subject>Mathematical & Computational Biology</subject><subject>Methods</subject><subject>Models, Biological</subject><subject>Nervous system</subject><subject>Neural transmission</subject><subject>Noise</subject><subject>Physics/Interdisciplinary Physics</subject><subject>Physiological aspects</subject><subject>Signal processing</subject><subject>Studies</subject><subject>System theory</subject><subject>Walking</subject><subject>Walking - physiology</subject><issn>1553-7358</issn><issn>1553-734X</issn><issn>1553-7358</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>DOA</sourceid><recordid>eNqVkktv1DAQgCMEoqXwDxBEcEAcdvEjjmMOSFXFY6UKpAJHZDl-bLxK7GA7FcuvxyHbqitxQXOYsf3NwzNTFE8hWENM4Zudn4IT_XqUrV1DACDA-F5xCgnBK4pJc_-OfVI8inEHQDZZ_bA4QRA2lAF6Wvy46vapG6ws1d6JrGMpnCrj3skueGd_i2S9K6-tKJUdtIv5JHqb9mXQapLz49tSjGNv5UImX3bTIFy5FTY9Lh4Y0Uf95KDPiu8f3n-7-LS6_PJxc3F-uZIUkbSCNUAKwLYRpKUEt5DoFhlqGiawYm3TICErppWBirSGAaWNAogZDChUCGN8Vjxf4o69j_zQmcghztJUhFSZ2CyE8mLHx2AHEfbcC8v_Xviw5SIkK3vNWSVqwEhbQwMqVCNGMKwIzWbDKgxljvXukG1qB62kdimI_ijo8YuzHd_6a45BrprNxbxYAviYLI_SJi076Z3TMnFYI4oAy9CrQ5bgf046Jj7YKHXfC6f9FHmDIGG0ZvPvXy7kVuTyrTM-Z5Uzzc9RRXL9gIBMrf9BZVE6j907bWy-P3J4feSQmaR_pa2YYuSbr1f_wX4-ZquFlcHHGLS57RwEfF7tmwHyebX5YbWz27O7Xb91utll_Ae2ePRy</recordid><startdate>20101201</startdate><enddate>20101201</enddate><creator>Zhang, Jie</creator><creator>Zhang, Kai</creator><creator>Feng, Jianfeng</creator><creator>Small, Michael</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISN</scope><scope>ISR</scope><scope>7X8</scope><scope>OIOZB</scope><scope>OTOTI</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20101201</creationdate><title>Rhythmic dynamics and synchronization via dimensionality reduction: application to human gait</title><author>Zhang, Jie ; Zhang, Kai ; Feng, Jianfeng ; Small, Michael</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c725t-1602d01b8a5b753b15eb2f7f89a3d9b882ac49edf1d5bf90defd029f3071d2333</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Ankle</topic><topic>Ankle - physiology</topic><topic>BASIC BIOLOGICAL SCIENCES</topic><topic>Biochemistry & Molecular Biology</topic><topic>Biomechanical Phenomena</topic><topic>Blood pressure</topic><topic>Computational Biology - methods</topic><topic>Feedback</topic><topic>Fourier analysis</topic><topic>Fourier transforms</topic><topic>Gait - physiology</topic><topic>Humans</topic><topic>Knee - physiology</topic><topic>Mathematical & Computational Biology</topic><topic>Methods</topic><topic>Models, Biological</topic><topic>Nervous system</topic><topic>Neural transmission</topic><topic>Noise</topic><topic>Physics/Interdisciplinary Physics</topic><topic>Physiological aspects</topic><topic>Signal processing</topic><topic>Studies</topic><topic>System theory</topic><topic>Walking</topic><topic>Walking - physiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Jie</creatorcontrib><creatorcontrib>Zhang, Kai</creatorcontrib><creatorcontrib>Feng, Jianfeng</creatorcontrib><creatorcontrib>Small, Michael</creatorcontrib><creatorcontrib>Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC)</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Canada</collection><collection>Gale In Context: Science</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV - Hybrid</collection><collection>OSTI.GOV</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PLoS computational biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Jie</au><au>Zhang, Kai</au><au>Feng, Jianfeng</au><au>Small, Michael</au><au>Kurths, Jürgen</au><aucorp>Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Rhythmic dynamics and synchronization via dimensionality reduction: application to human gait</atitle><jtitle>PLoS computational biology</jtitle><addtitle>PLoS Comput Biol</addtitle><date>2010-12-01</date><risdate>2010</risdate><volume>6</volume><issue>12</issue><spage>e1001033</spage><epage>e1001033</epage><pages>e1001033-e1001033</pages><issn>1553-7358</issn><issn>1553-734X</issn><eissn>1553-7358</eissn><abstract>Reliable characterization of locomotor dynamics of human walking is vital to understanding the neuromuscular control of human locomotion and disease diagnosis. However, the inherent oscillation and ubiquity of noise in such non-strictly periodic signals pose great challenges to current methodologies. To this end, we exploit the state-of-the-art technology in pattern recognition and, specifically, dimensionality reduction techniques, and propose to reconstruct and characterize the dynamics accurately on the cycle scale of the signal. This is achieved by deriving a low-dimensional representation of the cycles through global optimization, which effectively preserves the topology of the cycles that are embedded in a high-dimensional Euclidian space. Our approach demonstrates a clear advantage in capturing the intrinsic dynamics and probing the subtle synchronization patterns from uni/bivariate oscillatory signals over traditional methods. Application to human gait data for healthy subjects and diabetics reveals a significant difference in the dynamics of ankle movements and ankle-knee coordination, but not in knee movements. These results indicate that the impaired sensory feedback from the feet due to diabetes does not influence the knee movement in general, and that normal human walking is not critically dependent on the feedback from the peripheral nervous system.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>21187907</pmid><doi>10.1371/journal.pcbi.1001033</doi><oa>free_for_read</oa></addata></record> |
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subjects | Ankle Ankle - physiology BASIC BIOLOGICAL SCIENCES Biochemistry & Molecular Biology Biomechanical Phenomena Blood pressure Computational Biology - methods Feedback Fourier analysis Fourier transforms Gait - physiology Humans Knee - physiology Mathematical & Computational Biology Methods Models, Biological Nervous system Neural transmission Noise Physics/Interdisciplinary Physics Physiological aspects Signal processing Studies System theory Walking Walking - physiology |
title | Rhythmic dynamics and synchronization via dimensionality reduction: application to human gait |
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