High-resolution 3D structure determination of kaliotoxin by solid-state NMR spectroscopy
High-resolution solid-state NMR spectroscopy can provide structural information of proteins that cannot be studied by X-ray crystallography or solution NMR spectroscopy. Here we demonstrate that it is possible to determine a protein structure by solid-state NMR to a resolution comparable to that by...
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description | High-resolution solid-state NMR spectroscopy can provide structural information of proteins that cannot be studied by X-ray crystallography or solution NMR spectroscopy. Here we demonstrate that it is possible to determine a protein structure by solid-state NMR to a resolution comparable to that by solution NMR. Using an iterative assignment and structure calculation protocol, a large number of distance restraints was extracted from (1)H/(1)H mixing experiments recorded on a single uniformly labeled sample under magic angle spinning conditions. The calculated structure has a coordinate precision of 0.6 A and 1.3 A for the backbone and side chain heavy atoms, respectively, and deviates from the structure observed in solution. The approach is expected to be applicable to larger systems enabling the determination of high-resolution structures of amyloid or membrane proteins. |
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The approach is expected to be applicable to larger systems enabling the determination of high-resolution structures of amyloid or membrane proteins.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0002359</identifier><identifier>PMID: 18523586</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Amyloid ; Atomic structure ; Biology ; Biophysics ; Biophysics/Experimental Biophysical Methods ; Biophysics/Membrane Proteins and Energy Transduction ; Biophysics/Structural Genomics ; Chemistry ; Crystallography ; Experiments ; High resolution ; Magnetic resonance spectroscopy ; Mathematical analysis ; Membrane proteins ; Models, Molecular ; Molecular Structure ; NMR spectroscopy ; Nuclear magnetic resonance spectroscopy ; Potassium ; Protein structure ; Proteins ; Scorpion Venoms - chemistry ; Solid state ; Spectroscopy ; X-ray crystallography</subject><ispartof>PloS one, 2008-06, Vol.3 (6), p.e2359-e2359</ispartof><rights>COPYRIGHT 2008 Public Library of Science</rights><rights>2008 Korukottu et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Korukottu et al. 2008</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c662t-414935e7d21916375b7a9a6c769ce4a4868f9be6789ffd9362131ad5f9ef2dce3</citedby><cites>FETCH-LOGICAL-c662t-414935e7d21916375b7a9a6c769ce4a4868f9be6789ffd9362131ad5f9ef2dce3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2387072/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2387072/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,728,781,785,865,886,2103,2929,23868,27926,27927,53793,53795</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18523586$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Lu, Jianren</contributor><creatorcontrib>Korukottu, Jegannath</creatorcontrib><creatorcontrib>Schneider, Robert</creatorcontrib><creatorcontrib>Vijayan, Vinesh</creatorcontrib><creatorcontrib>Lange, Adam</creatorcontrib><creatorcontrib>Pongs, Olaf</creatorcontrib><creatorcontrib>Becker, Stefan</creatorcontrib><creatorcontrib>Baldus, Marc</creatorcontrib><creatorcontrib>Zweckstetter, Markus</creatorcontrib><title>High-resolution 3D structure determination of kaliotoxin by solid-state NMR spectroscopy</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>High-resolution solid-state NMR spectroscopy can provide structural information of proteins that cannot be studied by X-ray crystallography or solution NMR spectroscopy. Here we demonstrate that it is possible to determine a protein structure by solid-state NMR to a resolution comparable to that by solution NMR. Using an iterative assignment and structure calculation protocol, a large number of distance restraints was extracted from (1)H/(1)H mixing experiments recorded on a single uniformly labeled sample under magic angle spinning conditions. The calculated structure has a coordinate precision of 0.6 A and 1.3 A for the backbone and side chain heavy atoms, respectively, and deviates from the structure observed in solution. The approach is expected to be applicable to larger systems enabling the determination of high-resolution structures of amyloid or membrane proteins.</description><subject>Amyloid</subject><subject>Atomic structure</subject><subject>Biology</subject><subject>Biophysics</subject><subject>Biophysics/Experimental Biophysical Methods</subject><subject>Biophysics/Membrane Proteins and Energy Transduction</subject><subject>Biophysics/Structural Genomics</subject><subject>Chemistry</subject><subject>Crystallography</subject><subject>Experiments</subject><subject>High resolution</subject><subject>Magnetic resonance spectroscopy</subject><subject>Mathematical analysis</subject><subject>Membrane proteins</subject><subject>Models, Molecular</subject><subject>Molecular Structure</subject><subject>NMR spectroscopy</subject><subject>Nuclear magnetic resonance spectroscopy</subject><subject>Potassium</subject><subject>Protein structure</subject><subject>Proteins</subject><subject>Scorpion Venoms - 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proteins</topic><topic>Models, Molecular</topic><topic>Molecular Structure</topic><topic>NMR spectroscopy</topic><topic>Nuclear magnetic resonance spectroscopy</topic><topic>Potassium</topic><topic>Protein structure</topic><topic>Proteins</topic><topic>Scorpion Venoms - chemistry</topic><topic>Solid state</topic><topic>Spectroscopy</topic><topic>X-ray crystallography</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Korukottu, Jegannath</creatorcontrib><creatorcontrib>Schneider, Robert</creatorcontrib><creatorcontrib>Vijayan, Vinesh</creatorcontrib><creatorcontrib>Lange, Adam</creatorcontrib><creatorcontrib>Pongs, Olaf</creatorcontrib><creatorcontrib>Becker, Stefan</creatorcontrib><creatorcontrib>Baldus, Marc</creatorcontrib><creatorcontrib>Zweckstetter, Markus</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE 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Jianren</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>High-resolution 3D structure determination of kaliotoxin by solid-state NMR spectroscopy</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2008-06-04</date><risdate>2008</risdate><volume>3</volume><issue>6</issue><spage>e2359</spage><epage>e2359</epage><pages>e2359-e2359</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>High-resolution solid-state NMR spectroscopy can provide structural information of proteins that cannot be studied by X-ray crystallography or solution NMR spectroscopy. Here we demonstrate that it is possible to determine a protein structure by solid-state NMR to a resolution comparable to that by solution NMR. Using an iterative assignment and structure calculation protocol, a large number of distance restraints was extracted from (1)H/(1)H mixing experiments recorded on a single uniformly labeled sample under magic angle spinning conditions. The calculated structure has a coordinate precision of 0.6 A and 1.3 A for the backbone and side chain heavy atoms, respectively, and deviates from the structure observed in solution. The approach is expected to be applicable to larger systems enabling the determination of high-resolution structures of amyloid or membrane proteins.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>18523586</pmid><doi>10.1371/journal.pone.0002359</doi><tpages>e2359</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amyloid Atomic structure Biology Biophysics Biophysics/Experimental Biophysical Methods Biophysics/Membrane Proteins and Energy Transduction Biophysics/Structural Genomics Chemistry Crystallography Experiments High resolution Magnetic resonance spectroscopy Mathematical analysis Membrane proteins Models, Molecular Molecular Structure NMR spectroscopy Nuclear magnetic resonance spectroscopy Potassium Protein structure Proteins Scorpion Venoms - chemistry Solid state Spectroscopy X-ray crystallography |
title | High-resolution 3D structure determination of kaliotoxin by solid-state NMR spectroscopy |
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