Functional organization of hsp70 cluster in camel (Camelus dromedarius) and other mammals
Heat shock protein 70 (Hsp70) is a molecular chaperone providing tolerance to heat and other challenges at the cellular and organismal levels. We sequenced a genomic cluster containing three hsp70 family genes linked with major histocompatibility complex (MHC) class III region from an extremely heat...
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description | Heat shock protein 70 (Hsp70) is a molecular chaperone providing tolerance to heat and other challenges at the cellular and organismal levels. We sequenced a genomic cluster containing three hsp70 family genes linked with major histocompatibility complex (MHC) class III region from an extremely heat tolerant animal, camel (Camelus dromedarius). Two hsp70 family genes comprising the cluster contain heat shock elements (HSEs), while the third gene lacks HSEs and should not be induced by heat shock. Comparison of the camel hsp70 cluster with the corresponding regions from several mammalian species revealed similar organization of genes forming the cluster. Specifically, the two heat inducible hsp70 genes are arranged in tandem, while the third constitutively expressed hsp70 family member is present in inverted orientation. Comparison of regulatory regions of hsp70 genes from camel and other mammals demonstrates that transcription factor matches with highest significance are located in the highly conserved 250-bp upstream region and correspond to HSEs followed by NF-Y and Sp1 binding sites. The high degree of sequence conservation leaves little room for putative camel-specific regulatory elements. Surprisingly, RT-PCR and 5'/3'-RACE analysis demonstrated that all three hsp70 genes are expressed in camel's muscle and blood cells not only after heat shock, but under normal physiological conditions as well, and may account for tolerance of camel cells to extreme environmental conditions. A high degree of evolutionary conservation observed for the hsp70 cluster always linked with MHC locus in mammals suggests an important role of such organization for coordinated functioning of these vital genes. |
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We sequenced a genomic cluster containing three hsp70 family genes linked with major histocompatibility complex (MHC) class III region from an extremely heat tolerant animal, camel (Camelus dromedarius). Two hsp70 family genes comprising the cluster contain heat shock elements (HSEs), while the third gene lacks HSEs and should not be induced by heat shock. Comparison of the camel hsp70 cluster with the corresponding regions from several mammalian species revealed similar organization of genes forming the cluster. Specifically, the two heat inducible hsp70 genes are arranged in tandem, while the third constitutively expressed hsp70 family member is present in inverted orientation. Comparison of regulatory regions of hsp70 genes from camel and other mammals demonstrates that transcription factor matches with highest significance are located in the highly conserved 250-bp upstream region and correspond to HSEs followed by NF-Y and Sp1 binding sites. The high degree of sequence conservation leaves little room for putative camel-specific regulatory elements. Surprisingly, RT-PCR and 5'/3'-RACE analysis demonstrated that all three hsp70 genes are expressed in camel's muscle and blood cells not only after heat shock, but under normal physiological conditions as well, and may account for tolerance of camel cells to extreme environmental conditions. A high degree of evolutionary conservation observed for the hsp70 cluster always linked with MHC locus in mammals suggests an important role of such organization for coordinated functioning of these vital genes.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0027205</identifier><identifier>PMID: 22096537</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Acids ; Adaptation ; Analysis ; Animals ; Binding sites ; Biology ; Blood cells ; Blood Cells - metabolism ; Blotting, Southern ; Camelus - genetics ; Camelus - metabolism ; Camelus dromedarius ; Cloning ; Clusters ; Conservation ; Conserved sequence ; DNA, Intergenic - genetics ; Drosophila ; Environmental conditions ; Evolutionary conservation ; Functional morphology ; Genes ; Genetic aspects ; Heat ; Heat shock ; Heat shock proteins ; HSP70 Heat-Shock Proteins - genetics ; HSP70 Heat-Shock Proteins - metabolism ; Hsp70 protein ; Insects ; Laboratories ; Lupus ; Major histocompatibility complex ; Mammals ; Mammals - genetics ; Mammals - metabolism ; Molecular biology ; Multigene Family - genetics ; Muscles - metabolism ; Open Reading Frames - genetics ; Organisms ; Physiological aspects ; Polymerase chain reaction ; Regulation ; Regulatory sequences ; Reverse Transcriptase Polymerase Chain Reaction ; Sp1 protein ; Studies ; Transcription (Genetics)</subject><ispartof>PloS one, 2011-11, Vol.6 (11), p.e27205-e27205</ispartof><rights>COPYRIGHT 2011 Public Library of Science</rights><rights>2011 Garbuz et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Garbuz et al. 2011</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c592t-225fc714372294f1e4ad36d5b12e44834eac7a177bb2cf3a94f3fce9e093f7393</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3212538/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3212538/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79342,79343</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22096537$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Garbuz, David G</creatorcontrib><creatorcontrib>Astakhova, Lubov N</creatorcontrib><creatorcontrib>Zatsepina, Olga G</creatorcontrib><creatorcontrib>Arkhipova, Irina R</creatorcontrib><creatorcontrib>Nudler, Eugene</creatorcontrib><creatorcontrib>Evgen'ev, Michael B</creatorcontrib><title>Functional organization of hsp70 cluster in camel (Camelus dromedarius) and other mammals</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Heat shock protein 70 (Hsp70) is a molecular chaperone providing tolerance to heat and other challenges at the cellular and organismal levels. We sequenced a genomic cluster containing three hsp70 family genes linked with major histocompatibility complex (MHC) class III region from an extremely heat tolerant animal, camel (Camelus dromedarius). Two hsp70 family genes comprising the cluster contain heat shock elements (HSEs), while the third gene lacks HSEs and should not be induced by heat shock. Comparison of the camel hsp70 cluster with the corresponding regions from several mammalian species revealed similar organization of genes forming the cluster. Specifically, the two heat inducible hsp70 genes are arranged in tandem, while the third constitutively expressed hsp70 family member is present in inverted orientation. Comparison of regulatory regions of hsp70 genes from camel and other mammals demonstrates that transcription factor matches with highest significance are located in the highly conserved 250-bp upstream region and correspond to HSEs followed by NF-Y and Sp1 binding sites. The high degree of sequence conservation leaves little room for putative camel-specific regulatory elements. Surprisingly, RT-PCR and 5'/3'-RACE analysis demonstrated that all three hsp70 genes are expressed in camel's muscle and blood cells not only after heat shock, but under normal physiological conditions as well, and may account for tolerance of camel cells to extreme environmental conditions. A high degree of evolutionary conservation observed for the hsp70 cluster always linked with MHC locus in mammals suggests an important role of such organization for coordinated functioning of these vital genes.</description><subject>Acids</subject><subject>Adaptation</subject><subject>Analysis</subject><subject>Animals</subject><subject>Binding sites</subject><subject>Biology</subject><subject>Blood cells</subject><subject>Blood Cells - metabolism</subject><subject>Blotting, Southern</subject><subject>Camelus - genetics</subject><subject>Camelus - metabolism</subject><subject>Camelus dromedarius</subject><subject>Cloning</subject><subject>Clusters</subject><subject>Conservation</subject><subject>Conserved sequence</subject><subject>DNA, Intergenic - genetics</subject><subject>Drosophila</subject><subject>Environmental conditions</subject><subject>Evolutionary conservation</subject><subject>Functional morphology</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Heat</subject><subject>Heat shock</subject><subject>Heat shock proteins</subject><subject>HSP70 Heat-Shock Proteins - genetics</subject><subject>HSP70 Heat-Shock Proteins - metabolism</subject><subject>Hsp70 protein</subject><subject>Insects</subject><subject>Laboratories</subject><subject>Lupus</subject><subject>Major histocompatibility complex</subject><subject>Mammals</subject><subject>Mammals - genetics</subject><subject>Mammals - metabolism</subject><subject>Molecular biology</subject><subject>Multigene Family - genetics</subject><subject>Muscles - metabolism</subject><subject>Open Reading Frames - genetics</subject><subject>Organisms</subject><subject>Physiological aspects</subject><subject>Polymerase chain reaction</subject><subject>Regulation</subject><subject>Regulatory sequences</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>Sp1 protein</subject><subject>Studies</subject><subject>Transcription (Genetics)</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNptUsGOFCEQ7RiNu67-gVESD-phRihoaC4mm4mrm2ziRQ-eCE3DDJNuGKHbRL9e2und7JgNh4Li1at6lVdVLwleEyrIh32cUtD9-hCDXWMMAnD9qDonksKKA6aP793Pqmc57zGuacP50-oMAEteU3Fe_biaghl9LEwopq0O_o-enyg6tMsHgZHppzzahHxARg-2R-82c5gy6lIcbKeTn_J7pEOH4rgrwEEPg-7z8-qJK8G-WOJF9f3q07fNl9XN18_Xm8ublakljCuA2hlBGBUAkjlime4o7-qWgGWsocxqIzQRom3BOKoLhjpjpcWSOkElvaheH3kPfcxq2UpWhBLArGZMFMT1EdFFvVeH5AedfquovfqXKLKVTqM3vVWG1h2X0jQUOtZA0xrJutLQAZfQcl64Pi7dpraINzaMSfcnpKc_we_UNv5SFAiU9ReCtwtBij8nm0c1-Gxs3-tg45SVxDUXgshZ2Jv_kA-LW1BbXeb3wcXS1syc6pIJ3nAKFBfU-gFUOZ0dvCkOcr7kTwrYscCkmHOy7k4iwWr23-0wavafWvxXyl7dX89d0a3h6F_TJtc0</recordid><startdate>20111109</startdate><enddate>20111109</enddate><creator>Garbuz, David G</creator><creator>Astakhova, Lubov N</creator><creator>Zatsepina, Olga G</creator><creator>Arkhipova, Irina R</creator><creator>Nudler, Eugene</creator><creator>Evgen'ev, Michael B</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20111109</creationdate><title>Functional organization of hsp70 cluster in camel (Camelus dromedarius) and other mammals</title><author>Garbuz, David G ; Astakhova, Lubov N ; Zatsepina, Olga G ; Arkhipova, Irina R ; Nudler, Eugene ; Evgen'ev, Michael B</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c592t-225fc714372294f1e4ad36d5b12e44834eac7a177bb2cf3a94f3fce9e093f7393</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Acids</topic><topic>Adaptation</topic><topic>Analysis</topic><topic>Animals</topic><topic>Binding sites</topic><topic>Biology</topic><topic>Blood cells</topic><topic>Blood Cells - metabolism</topic><topic>Blotting, Southern</topic><topic>Camelus - genetics</topic><topic>Camelus - metabolism</topic><topic>Camelus dromedarius</topic><topic>Cloning</topic><topic>Clusters</topic><topic>Conservation</topic><topic>Conserved sequence</topic><topic>DNA, Intergenic - genetics</topic><topic>Drosophila</topic><topic>Environmental conditions</topic><topic>Evolutionary conservation</topic><topic>Functional morphology</topic><topic>Genes</topic><topic>Genetic aspects</topic><topic>Heat</topic><topic>Heat shock</topic><topic>Heat shock proteins</topic><topic>HSP70 Heat-Shock Proteins - genetics</topic><topic>HSP70 Heat-Shock Proteins - metabolism</topic><topic>Hsp70 protein</topic><topic>Insects</topic><topic>Laboratories</topic><topic>Lupus</topic><topic>Major histocompatibility complex</topic><topic>Mammals</topic><topic>Mammals - genetics</topic><topic>Mammals - metabolism</topic><topic>Molecular biology</topic><topic>Multigene Family - genetics</topic><topic>Muscles - metabolism</topic><topic>Open Reading Frames - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Garbuz, David G</au><au>Astakhova, Lubov N</au><au>Zatsepina, Olga G</au><au>Arkhipova, Irina R</au><au>Nudler, Eugene</au><au>Evgen'ev, Michael B</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Functional organization of hsp70 cluster in camel (Camelus dromedarius) and other mammals</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2011-11-09</date><risdate>2011</risdate><volume>6</volume><issue>11</issue><spage>e27205</spage><epage>e27205</epage><pages>e27205-e27205</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Heat shock protein 70 (Hsp70) is a molecular chaperone providing tolerance to heat and other challenges at the cellular and organismal levels. We sequenced a genomic cluster containing three hsp70 family genes linked with major histocompatibility complex (MHC) class III region from an extremely heat tolerant animal, camel (Camelus dromedarius). Two hsp70 family genes comprising the cluster contain heat shock elements (HSEs), while the third gene lacks HSEs and should not be induced by heat shock. Comparison of the camel hsp70 cluster with the corresponding regions from several mammalian species revealed similar organization of genes forming the cluster. Specifically, the two heat inducible hsp70 genes are arranged in tandem, while the third constitutively expressed hsp70 family member is present in inverted orientation. Comparison of regulatory regions of hsp70 genes from camel and other mammals demonstrates that transcription factor matches with highest significance are located in the highly conserved 250-bp upstream region and correspond to HSEs followed by NF-Y and Sp1 binding sites. The high degree of sequence conservation leaves little room for putative camel-specific regulatory elements. Surprisingly, RT-PCR and 5'/3'-RACE analysis demonstrated that all three hsp70 genes are expressed in camel's muscle and blood cells not only after heat shock, but under normal physiological conditions as well, and may account for tolerance of camel cells to extreme environmental conditions. A high degree of evolutionary conservation observed for the hsp70 cluster always linked with MHC locus in mammals suggests an important role of such organization for coordinated functioning of these vital genes.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>22096537</pmid><doi>10.1371/journal.pone.0027205</doi><oa>free_for_read</oa></addata></record> |
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subjects | Acids Adaptation Analysis Animals Binding sites Biology Blood cells Blood Cells - metabolism Blotting, Southern Camelus - genetics Camelus - metabolism Camelus dromedarius Cloning Clusters Conservation Conserved sequence DNA, Intergenic - genetics Drosophila Environmental conditions Evolutionary conservation Functional morphology Genes Genetic aspects Heat Heat shock Heat shock proteins HSP70 Heat-Shock Proteins - genetics HSP70 Heat-Shock Proteins - metabolism Hsp70 protein Insects Laboratories Lupus Major histocompatibility complex Mammals Mammals - genetics Mammals - metabolism Molecular biology Multigene Family - genetics Muscles - metabolism Open Reading Frames - genetics Organisms Physiological aspects Polymerase chain reaction Regulation Regulatory sequences Reverse Transcriptase Polymerase Chain Reaction Sp1 protein Studies Transcription (Genetics) |
title | Functional organization of hsp70 cluster in camel (Camelus dromedarius) and other mammals |
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