Benchmarking and analysis of protein docking performance in Rosetta v3.2

RosettaDock has been increasingly used in protein docking and design strategies in order to predict the structure of protein-protein interfaces. Here we test capabilities of RosettaDock 3.2, part of the newly developed Rosetta v3.2 modeling suite, against Docking Benchmark 3.0, and compare it with R...

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Veröffentlicht in:	PloS one 2011-08, Vol.6 (8), p.e22477-e22477
Hauptverfasser:	Chaudhury, Sidhartha, Berrondo, Monica, Weitzner, Brian D, Muthu, Pravin, Bergman, Hannah, Gray, Jeffrey J
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Anabaena Analysis Architectural engineering Benchmarking Benchmarks Binding sites Biology Crystal structure Docking Engineering Enzymes Failure analysis Fourier transforms Funnels Inhibitors Interfaces Ligands Mathematical models Modelling Packaging Physics Protein Binding Protein structure Proteins Proteins - metabolism Reliability analysis Reproducibility of Results Software - standards Software packages Software upgrading Statistical analysis Stochasticity
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