Challenges in identifying sites climatically matched to the native ranges of animal invaders
Species distribution models are often used to characterize a species' native range climate, so as to identify sites elsewhere in the world that may be climatically similar and therefore at risk of invasion by the species. This endeavor provoked intense public controversy over recent attempts to...
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description | Species distribution models are often used to characterize a species' native range climate, so as to identify sites elsewhere in the world that may be climatically similar and therefore at risk of invasion by the species. This endeavor provoked intense public controversy over recent attempts to model areas at risk of invasion by the Indian Python (Python molurus). We evaluated a number of MaxEnt models on this species to assess MaxEnt's utility for vertebrate climate matching.
Overall, we found MaxEnt models to be very sensitive to modeling choices and selection of input localities and background regions. As used, MaxEnt invoked minimal protections against data dredging, multi-collinearity of explanatory axes, and overfitting. As used, MaxEnt endeavored to identify a single ideal climate, whereas different climatic considerations may determine range boundaries in different parts of the native range. MaxEnt was extremely sensitive to both the choice of background locations for the python, and to selection of presence points: inclusion of just four erroneous localities was responsible for Pyron et al.'s conclusion that no additional portions of the U.S. mainland were at risk of python invasion. When used with default settings, MaxEnt overfit the realized climate space, identifying models with about 60 parameters, about five times the number of parameters justifiable when optimized on the basis of Akaike's Information Criterion.
When used with default settings, MaxEnt may not be an appropriate vehicle for identifying all sites at risk of colonization. Model instability and dearth of protections against overfitting, multi-collinearity, and data dredging may combine with a failure to distinguish fundamental from realized climate envelopes to produce models of limited utility. A priori identification of biologically realistic model structure, combined with computational protections against these statistical problems, may produce more robust models of invasion risk. |
doi_str_mv | 10.1371/journal.pone.0014670 |
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Overall, we found MaxEnt models to be very sensitive to modeling choices and selection of input localities and background regions. As used, MaxEnt invoked minimal protections against data dredging, multi-collinearity of explanatory axes, and overfitting. As used, MaxEnt endeavored to identify a single ideal climate, whereas different climatic considerations may determine range boundaries in different parts of the native range. MaxEnt was extremely sensitive to both the choice of background locations for the python, and to selection of presence points: inclusion of just four erroneous localities was responsible for Pyron et al.'s conclusion that no additional portions of the U.S. mainland were at risk of python invasion. When used with default settings, MaxEnt overfit the realized climate space, identifying models with about 60 parameters, about five times the number of parameters justifiable when optimized on the basis of Akaike's Information Criterion.
When used with default settings, MaxEnt may not be an appropriate vehicle for identifying all sites at risk of colonization. Model instability and dearth of protections against overfitting, multi-collinearity, and data dredging may combine with a failure to distinguish fundamental from realized climate envelopes to produce models of limited utility. A priori identification of biologically realistic model structure, combined with computational protections against these statistical problems, may produce more robust models of invasion risk.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0014670</identifier><identifier>PMID: 21347411</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Analysis ; Animals ; Automotive parts ; Bias ; Boidae - physiology ; Climate ; Climate models ; Collinearity ; Colonization ; Computer applications ; Dredging ; Ecology ; Ecology/Behavioral Ecology ; Ecology/Conservation and Restoration Ecology ; Ecology/Global Change Ecology ; Ecosystem ; Geology ; Internationality ; Introduced Species - statistics & numerical data ; Invasive species ; Lampropeltis getula ; Models, Theoretical ; Nonnative species ; Parameter identification ; Python molurus ; Risk assessment ; Science ; Stability ; Statistical analysis ; Trade regulation</subject><ispartof>PloS one, 2011-02, Vol.6 (2), p.e14670-e14670</ispartof><rights>COPYRIGHT 2011 Public Library of Science</rights><rights>2011. This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. 2011</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c691t-51ec29c9fa5b2126d33f8da254ec673002ac0429ee23264149d4422f5bb9f4f43</citedby><cites>FETCH-LOGICAL-c691t-51ec29c9fa5b2126d33f8da254ec673002ac0429ee23264149d4422f5bb9f4f43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3036589/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3036589/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,861,882,2096,2915,23847,27905,27906,53772,53774,79349,79350</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21347411$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Hector, Andy</contributor><creatorcontrib>Rodda, Gordon H</creatorcontrib><creatorcontrib>Jarnevich, Catherine S</creatorcontrib><creatorcontrib>Reed, Robert N</creatorcontrib><title>Challenges in identifying sites climatically matched to the native ranges of animal invaders</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Species distribution models are often used to characterize a species' native range climate, so as to identify sites elsewhere in the world that may be climatically similar and therefore at risk of invasion by the species. This endeavor provoked intense public controversy over recent attempts to model areas at risk of invasion by the Indian Python (Python molurus). We evaluated a number of MaxEnt models on this species to assess MaxEnt's utility for vertebrate climate matching.
Overall, we found MaxEnt models to be very sensitive to modeling choices and selection of input localities and background regions. As used, MaxEnt invoked minimal protections against data dredging, multi-collinearity of explanatory axes, and overfitting. As used, MaxEnt endeavored to identify a single ideal climate, whereas different climatic considerations may determine range boundaries in different parts of the native range. MaxEnt was extremely sensitive to both the choice of background locations for the python, and to selection of presence points: inclusion of just four erroneous localities was responsible for Pyron et al.'s conclusion that no additional portions of the U.S. mainland were at risk of python invasion. When used with default settings, MaxEnt overfit the realized climate space, identifying models with about 60 parameters, about five times the number of parameters justifiable when optimized on the basis of Akaike's Information Criterion.
When used with default settings, MaxEnt may not be an appropriate vehicle for identifying all sites at risk of colonization. Model instability and dearth of protections against overfitting, multi-collinearity, and data dredging may combine with a failure to distinguish fundamental from realized climate envelopes to produce models of limited utility. A priori identification of biologically realistic model structure, combined with computational protections against these statistical problems, may produce more robust models of invasion risk.</description><subject>Analysis</subject><subject>Animals</subject><subject>Automotive parts</subject><subject>Bias</subject><subject>Boidae - physiology</subject><subject>Climate</subject><subject>Climate models</subject><subject>Collinearity</subject><subject>Colonization</subject><subject>Computer applications</subject><subject>Dredging</subject><subject>Ecology</subject><subject>Ecology/Behavioral Ecology</subject><subject>Ecology/Conservation and Restoration Ecology</subject><subject>Ecology/Global Change Ecology</subject><subject>Ecosystem</subject><subject>Geology</subject><subject>Internationality</subject><subject>Introduced Species - statistics & numerical data</subject><subject>Invasive species</subject><subject>Lampropeltis getula</subject><subject>Models, Theoretical</subject><subject>Nonnative species</subject><subject>Parameter identification</subject><subject>Python molurus</subject><subject>Risk assessment</subject><subject>Science</subject><subject>Stability</subject><subject>Statistical analysis</subject><subject>Trade regulation</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>DOA</sourceid><recordid>eNqNk1uLEzEUxwdR3HX1G4gOCIoPrblNpnkRluKlsLDg7UkImVxmUtKkm8wU--1Nt7NLR_ZB8pBw8vv_T3KSUxQvIZhDXMMP6zBEL9x8G7yeAwAJrcGj4hwyjGYUAfz4ZH1WPEtpDUCFF5Q-Lc4QxKQmEJ4Xv5edcE77VqfS-tIq7Xtr9ta3ZbJ9DkpnN6K3MlP7Mq9kp1XZh7LvdOnzxk6XUdzKgymFz7DLRjuhdEzPiydGuKRfjPNF8fPzpx_Lr7Or6y-r5eXVTFIG-1kFtURMMiOqBkFEFcZmoQSqiJa0xgAgIQFBTGuEESWQMEUIQqZqGmaIIfiieH303bqQ-FiYxCFiiFY1gjATqyOhgljzbczHjHsehOW3gRBbLmK-pdOcQqaQoALXDSYLjERtIIVCSawq06BF9vo4ZhuajVYyVywKNzGd7njb8TbsOAaYVguWDd6NBjHcDDr1fGOT1M4Jr8OQ-KLCjBGAcCbf_EM-fLmRakU-v_Um5LTy4MkvSU0ZqGpCMzV_gMpD6Y2V-RMZm-MTwfuJIDO9_tO3YkiJr75_-3_2-teUfXvCdlq4vkvBDb0NPk1BcgRlDClFbe5rDAE_9MBdNfihB_jYA1n26vR97kV3nx7_BftAARE</recordid><startdate>20110209</startdate><enddate>20110209</enddate><creator>Rodda, Gordon H</creator><creator>Jarnevich, Catherine S</creator><creator>Reed, Robert N</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20110209</creationdate><title>Challenges in identifying sites climatically matched to the native ranges of animal invaders</title><author>Rodda, Gordon H ; Jarnevich, Catherine S ; Reed, Robert N</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c691t-51ec29c9fa5b2126d33f8da254ec673002ac0429ee23264149d4422f5bb9f4f43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Analysis</topic><topic>Animals</topic><topic>Automotive parts</topic><topic>Bias</topic><topic>Boidae - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Rodda, Gordon H</au><au>Jarnevich, Catherine S</au><au>Reed, Robert N</au><au>Hector, Andy</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Challenges in identifying sites climatically matched to the native ranges of animal invaders</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2011-02-09</date><risdate>2011</risdate><volume>6</volume><issue>2</issue><spage>e14670</spage><epage>e14670</epage><pages>e14670-e14670</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Species distribution models are often used to characterize a species' native range climate, so as to identify sites elsewhere in the world that may be climatically similar and therefore at risk of invasion by the species. This endeavor provoked intense public controversy over recent attempts to model areas at risk of invasion by the Indian Python (Python molurus). We evaluated a number of MaxEnt models on this species to assess MaxEnt's utility for vertebrate climate matching.
Overall, we found MaxEnt models to be very sensitive to modeling choices and selection of input localities and background regions. As used, MaxEnt invoked minimal protections against data dredging, multi-collinearity of explanatory axes, and overfitting. As used, MaxEnt endeavored to identify a single ideal climate, whereas different climatic considerations may determine range boundaries in different parts of the native range. MaxEnt was extremely sensitive to both the choice of background locations for the python, and to selection of presence points: inclusion of just four erroneous localities was responsible for Pyron et al.'s conclusion that no additional portions of the U.S. mainland were at risk of python invasion. When used with default settings, MaxEnt overfit the realized climate space, identifying models with about 60 parameters, about five times the number of parameters justifiable when optimized on the basis of Akaike's Information Criterion.
When used with default settings, MaxEnt may not be an appropriate vehicle for identifying all sites at risk of colonization. Model instability and dearth of protections against overfitting, multi-collinearity, and data dredging may combine with a failure to distinguish fundamental from realized climate envelopes to produce models of limited utility. A priori identification of biologically realistic model structure, combined with computational protections against these statistical problems, may produce more robust models of invasion risk.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>21347411</pmid><doi>10.1371/journal.pone.0014670</doi><tpages>e14670</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Analysis Animals Automotive parts Bias Boidae - physiology Climate Climate models Collinearity Colonization Computer applications Dredging Ecology Ecology/Behavioral Ecology Ecology/Conservation and Restoration Ecology Ecology/Global Change Ecology Ecosystem Geology Internationality Introduced Species - statistics & numerical data Invasive species Lampropeltis getula Models, Theoretical Nonnative species Parameter identification Python molurus Risk assessment Science Stability Statistical analysis Trade regulation |
title | Challenges in identifying sites climatically matched to the native ranges of animal invaders |
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