Density-dependent cladogenesis in birds
A characteristic signature of adaptive radiation is a slowing of the rate of speciation toward the present. On the basis of molecular phylogenies, studies of single clades have frequently found evidence for a slowdown in diversification rate and have interpreted this as evidence for density dependen...
Gespeichert in:
Veröffentlicht in: | PLoS biology 2008-03, Vol.6 (3), p.e71-e71 |
---|---|
Hauptverfasser: | , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | e71 |
---|---|
container_issue | 3 |
container_start_page | e71 |
container_title | PLoS biology |
container_volume | 6 |
creator | Phillimore, Albert B Price, Trevor D |
description | A characteristic signature of adaptive radiation is a slowing of the rate of speciation toward the present. On the basis of molecular phylogenies, studies of single clades have frequently found evidence for a slowdown in diversification rate and have interpreted this as evidence for density dependent speciation. However, we demonstrated via simulation that large clades are expected to show stronger slowdowns than small clades, even if the probability of speciation and extinction remains constant through time. This is a consequence of exponential growth: clades, which, by chance, diversify at above the average rate early in their history, will tend to be large. They will also tend to regress back to the average diversification rate later on, and therefore show a slowdown. We conducted a meta-analysis of the distribution of speciation events through time, focusing on sequence-based phylogenies for 45 clades of birds. Thirteen of the 23 clades (57%) that include more than 20 species show significant slowdowns. The high frequency of slowdowns observed in large clades is even more extreme than expected under a purely stochastic constant-rate model, but is consistent with the adaptive radiation model. Taken together, our data strongly support a model of density-dependent speciation in birds, whereby speciation slows as ecological opportunities and geographical space place limits on clade growth. |
doi_str_mv | 10.1371/journal.pbio.0060071 |
format | Article |
fullrecord | <record><control><sourceid>gale_plos_</sourceid><recordid>TN_cdi_plos_journals_1292306285</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A202126566</galeid><doaj_id>oai_doaj_org_article_186491db887c4841ae42836a28508f46</doaj_id><sourcerecordid>A202126566</sourcerecordid><originalsourceid>FETCH-LOGICAL-c693t-31b69df4ed2098935d156937cfd66e2259c845befa4a04f9fad12725d7b8b2753</originalsourceid><addsrcrecordid>eNqVkluL1DAUx4so7rr6DUQHBMWHjkmaW1-EZb0NLC54ew1pclIzdJrZpBX325s6VbeyD0oeEs75nf-55BTFQ4zWuBL4xTaMsdfdet_4sEaIIyTwreIYM8pKISW7fe19VNxLaYsQITWRd4sjLCvOCePHxbNX0Cc_XJUW9tBb6IeV6bQNLfSQfFr5ftX4aNP94o7TXYIH831SfH7z-tPZu_L84u3m7PS8NLyuhrLCDa-to2AJqmVdMYtZdgjjLOdACKuNpKwBp6lG1NVOW0wEYVY0siGCVSfF44PuvgtJzT0mhXPhFeJETsTmQNigt2of_U7HKxW0Vz8NIbZKx8GbDhSWnNbYNlIKQyXFGijJnessg6SjPGu9nLONzQ6sye1H3S1El57ef1Vt-KYIEagiIgs8nQViuBwhDWrnk4Gu0z2EMSmBKKVY4Aw--Qu8ubeZanUu3_cu5KxmklSnBBFMOONT1esbqHws7LwJPTif7YuA54uAzAzwfWj1mJLafPzwH-z7f2cvvixZemBNDClFcL-njJGaFvrXQNS00Gpe6Bz26PoP_QmaN7j6ARxy7Qg</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1292306285</pqid></control><display><type>article</type><title>Density-dependent cladogenesis in birds</title><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><source>Public Library of Science (PLoS)</source><creator>Phillimore, Albert B ; Price, Trevor D</creator><creatorcontrib>Phillimore, Albert B ; Price, Trevor D</creatorcontrib><description>A characteristic signature of adaptive radiation is a slowing of the rate of speciation toward the present. On the basis of molecular phylogenies, studies of single clades have frequently found evidence for a slowdown in diversification rate and have interpreted this as evidence for density dependent speciation. However, we demonstrated via simulation that large clades are expected to show stronger slowdowns than small clades, even if the probability of speciation and extinction remains constant through time. This is a consequence of exponential growth: clades, which, by chance, diversify at above the average rate early in their history, will tend to be large. They will also tend to regress back to the average diversification rate later on, and therefore show a slowdown. We conducted a meta-analysis of the distribution of speciation events through time, focusing on sequence-based phylogenies for 45 clades of birds. Thirteen of the 23 clades (57%) that include more than 20 species show significant slowdowns. The high frequency of slowdowns observed in large clades is even more extreme than expected under a purely stochastic constant-rate model, but is consistent with the adaptive radiation model. Taken together, our data strongly support a model of density-dependent speciation in birds, whereby speciation slows as ecological opportunities and geographical space place limits on clade growth.</description><identifier>ISSN: 1545-7885</identifier><identifier>ISSN: 1544-9173</identifier><identifier>EISSN: 1545-7885</identifier><identifier>DOI: 10.1371/journal.pbio.0060071</identifier><identifier>PMID: 18366256</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Age ; Aging ; Animals ; Birds - classification ; Birds - genetics ; Birds - physiology ; Competition ; Computer Simulation ; Ecology ; Endangered & extinct species ; Evolution ; Evolutionary Biology ; Genetic Speciation ; Phylogenetics ; Phylogeny ; Population Density ; Probability ; Regression Analysis ; Stochastic models ; Studies</subject><ispartof>PLoS biology, 2008-03, Vol.6 (3), p.e71-e71</ispartof><rights>COPYRIGHT 2008 Public Library of Science</rights><rights>2008 Phillimore and Price. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Phillimore AB, Price TD (2008) Density-Dependent Cladogenesis in Birds. PLoS Biol 6(3): e71. doi:10.1371/journal.pbio.0060071</rights><rights>2008 Phillimore and Price. 2008</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c693t-31b69df4ed2098935d156937cfd66e2259c845befa4a04f9fad12725d7b8b2753</citedby><cites>FETCH-LOGICAL-c693t-31b69df4ed2098935d156937cfd66e2259c845befa4a04f9fad12725d7b8b2753</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2270327/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2270327/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,2915,23845,27901,27902,53766,53768,79342,79343</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18366256$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Phillimore, Albert B</creatorcontrib><creatorcontrib>Price, Trevor D</creatorcontrib><title>Density-dependent cladogenesis in birds</title><title>PLoS biology</title><addtitle>PLoS Biol</addtitle><description>A characteristic signature of adaptive radiation is a slowing of the rate of speciation toward the present. On the basis of molecular phylogenies, studies of single clades have frequently found evidence for a slowdown in diversification rate and have interpreted this as evidence for density dependent speciation. However, we demonstrated via simulation that large clades are expected to show stronger slowdowns than small clades, even if the probability of speciation and extinction remains constant through time. This is a consequence of exponential growth: clades, which, by chance, diversify at above the average rate early in their history, will tend to be large. They will also tend to regress back to the average diversification rate later on, and therefore show a slowdown. We conducted a meta-analysis of the distribution of speciation events through time, focusing on sequence-based phylogenies for 45 clades of birds. Thirteen of the 23 clades (57%) that include more than 20 species show significant slowdowns. The high frequency of slowdowns observed in large clades is even more extreme than expected under a purely stochastic constant-rate model, but is consistent with the adaptive radiation model. Taken together, our data strongly support a model of density-dependent speciation in birds, whereby speciation slows as ecological opportunities and geographical space place limits on clade growth.</description><subject>Age</subject><subject>Aging</subject><subject>Animals</subject><subject>Birds - classification</subject><subject>Birds - genetics</subject><subject>Birds - physiology</subject><subject>Competition</subject><subject>Computer Simulation</subject><subject>Ecology</subject><subject>Endangered & extinct species</subject><subject>Evolution</subject><subject>Evolutionary Biology</subject><subject>Genetic Speciation</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Population Density</subject><subject>Probability</subject><subject>Regression Analysis</subject><subject>Stochastic models</subject><subject>Studies</subject><issn>1545-7885</issn><issn>1544-9173</issn><issn>1545-7885</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNqVkluL1DAUx4so7rr6DUQHBMWHjkmaW1-EZb0NLC54ew1pclIzdJrZpBX325s6VbeyD0oeEs75nf-55BTFQ4zWuBL4xTaMsdfdet_4sEaIIyTwreIYM8pKISW7fe19VNxLaYsQITWRd4sjLCvOCePHxbNX0Cc_XJUW9tBb6IeV6bQNLfSQfFr5ftX4aNP94o7TXYIH831SfH7z-tPZu_L84u3m7PS8NLyuhrLCDa-to2AJqmVdMYtZdgjjLOdACKuNpKwBp6lG1NVOW0wEYVY0siGCVSfF44PuvgtJzT0mhXPhFeJETsTmQNigt2of_U7HKxW0Vz8NIbZKx8GbDhSWnNbYNlIKQyXFGijJnessg6SjPGu9nLONzQ6sye1H3S1El57ef1Vt-KYIEagiIgs8nQViuBwhDWrnk4Gu0z2EMSmBKKVY4Aw--Qu8ubeZanUu3_cu5KxmklSnBBFMOONT1esbqHws7LwJPTif7YuA54uAzAzwfWj1mJLafPzwH-z7f2cvvixZemBNDClFcL-njJGaFvrXQNS00Gpe6Bz26PoP_QmaN7j6ARxy7Qg</recordid><startdate>20080301</startdate><enddate>20080301</enddate><creator>Phillimore, Albert B</creator><creator>Price, Trevor D</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISN</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><scope>CZG</scope></search><sort><creationdate>20080301</creationdate><title>Density-dependent cladogenesis in birds</title><author>Phillimore, Albert B ; Price, Trevor D</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c693t-31b69df4ed2098935d156937cfd66e2259c845befa4a04f9fad12725d7b8b2753</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Age</topic><topic>Aging</topic><topic>Animals</topic><topic>Birds - classification</topic><topic>Birds - genetics</topic><topic>Birds - physiology</topic><topic>Competition</topic><topic>Computer Simulation</topic><topic>Ecology</topic><topic>Endangered & extinct species</topic><topic>Evolution</topic><topic>Evolutionary Biology</topic><topic>Genetic Speciation</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Population Density</topic><topic>Probability</topic><topic>Regression Analysis</topic><topic>Stochastic models</topic><topic>Studies</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Phillimore, Albert B</creatorcontrib><creatorcontrib>Price, Trevor D</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Canada</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><collection>PLoS Biology</collection><jtitle>PLoS biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Phillimore, Albert B</au><au>Price, Trevor D</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Density-dependent cladogenesis in birds</atitle><jtitle>PLoS biology</jtitle><addtitle>PLoS Biol</addtitle><date>2008-03-01</date><risdate>2008</risdate><volume>6</volume><issue>3</issue><spage>e71</spage><epage>e71</epage><pages>e71-e71</pages><issn>1545-7885</issn><issn>1544-9173</issn><eissn>1545-7885</eissn><abstract>A characteristic signature of adaptive radiation is a slowing of the rate of speciation toward the present. On the basis of molecular phylogenies, studies of single clades have frequently found evidence for a slowdown in diversification rate and have interpreted this as evidence for density dependent speciation. However, we demonstrated via simulation that large clades are expected to show stronger slowdowns than small clades, even if the probability of speciation and extinction remains constant through time. This is a consequence of exponential growth: clades, which, by chance, diversify at above the average rate early in their history, will tend to be large. They will also tend to regress back to the average diversification rate later on, and therefore show a slowdown. We conducted a meta-analysis of the distribution of speciation events through time, focusing on sequence-based phylogenies for 45 clades of birds. Thirteen of the 23 clades (57%) that include more than 20 species show significant slowdowns. The high frequency of slowdowns observed in large clades is even more extreme than expected under a purely stochastic constant-rate model, but is consistent with the adaptive radiation model. Taken together, our data strongly support a model of density-dependent speciation in birds, whereby speciation slows as ecological opportunities and geographical space place limits on clade growth.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>18366256</pmid><doi>10.1371/journal.pbio.0060071</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1545-7885 |
ispartof | PLoS biology, 2008-03, Vol.6 (3), p.e71-e71 |
issn | 1545-7885 1544-9173 1545-7885 |
language | eng |
recordid | cdi_plos_journals_1292306285 |
source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Public Library of Science (PLoS) |
subjects | Age Aging Animals Birds - classification Birds - genetics Birds - physiology Competition Computer Simulation Ecology Endangered & extinct species Evolution Evolutionary Biology Genetic Speciation Phylogenetics Phylogeny Population Density Probability Regression Analysis Stochastic models Studies |
title | Density-dependent cladogenesis in birds |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-09T00%3A15%3A31IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Density-dependent%20cladogenesis%20in%20birds&rft.jtitle=PLoS%20biology&rft.au=Phillimore,%20Albert%20B&rft.date=2008-03-01&rft.volume=6&rft.issue=3&rft.spage=e71&rft.epage=e71&rft.pages=e71-e71&rft.issn=1545-7885&rft.eissn=1545-7885&rft_id=info:doi/10.1371/journal.pbio.0060071&rft_dat=%3Cgale_plos_%3EA202126566%3C/gale_plos_%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1292306285&rft_id=info:pmid/18366256&rft_galeid=A202126566&rft_doaj_id=oai_doaj_org_article_186491db887c4841ae42836a28508f46&rfr_iscdi=true |