DNA barcoding the geometrid fauna of Bavaria (Lepidoptera): successes, surprises, and questions
The State of Bavaria is involved in a research program that will lead to the construction of a DNA barcode library for all animal species within its territorial boundaries. The present study provides a comprehensive DNA barcode library for the Geometridae, one of the most diverse of insect families....
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| Veröffentlicht in: | PloS one 2011-02, Vol.6 (2), p.e17134-e17134 |
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| creator | Hausmann, Axel Haszprunar, Gerhard Hebert, Paul D N |
| description | The State of Bavaria is involved in a research program that will lead to the construction of a DNA barcode library for all animal species within its territorial boundaries. The present study provides a comprehensive DNA barcode library for the Geometridae, one of the most diverse of insect families.
This study reports DNA barcodes for 400 Bavarian geometrid species, 98 per cent of the known fauna, and approximately one per cent of all Bavarian animal species. Although 98.5% of these species possess diagnostic barcode sequences in Bavaria, records from neighbouring countries suggest that species-level resolution may be compromised in up to 3.5% of cases. All taxa which apparently share barcodes are discussed in detail. One case of modest divergence (1.4%) revealed a species overlooked by the current taxonomic system: Eupithecia goossensiata Mabille, 1869 stat.n. is raised from synonymy with Eupithecia absinthiata (Clerck, 1759) to species rank. Deep intraspecific sequence divergences (>2%) were detected in 20 traditionally recognized species.
The study emphasizes the effectiveness of DNA barcoding as a tool for monitoring biodiversity. Open access is provided to a data set that includes records for 1,395 geometrid specimens (331 species) from Bavaria, with 69 additional species from neighbouring regions. Taxa with deep intraspecific sequence divergences are undergoing more detailed analysis to ascertain if they represent cases of cryptic diversity. |
| doi_str_mv | 10.1371/journal.pone.0017134 |
| format | Article |
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This study reports DNA barcodes for 400 Bavarian geometrid species, 98 per cent of the known fauna, and approximately one per cent of all Bavarian animal species. Although 98.5% of these species possess diagnostic barcode sequences in Bavaria, records from neighbouring countries suggest that species-level resolution may be compromised in up to 3.5% of cases. All taxa which apparently share barcodes are discussed in detail. One case of modest divergence (1.4%) revealed a species overlooked by the current taxonomic system: Eupithecia goossensiata Mabille, 1869 stat.n. is raised from synonymy with Eupithecia absinthiata (Clerck, 1759) to species rank. Deep intraspecific sequence divergences (>2%) were detected in 20 traditionally recognized species.
The study emphasizes the effectiveness of DNA barcoding as a tool for monitoring biodiversity. Open access is provided to a data set that includes records for 1,395 geometrid specimens (331 species) from Bavaria, with 69 additional species from neighbouring regions. Taxa with deep intraspecific sequence divergences are undergoing more detailed analysis to ascertain if they represent cases of cryptic diversity.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0017134</identifier><identifier>PMID: 21423340</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Agrodiaetus ; Analysis ; Animal species ; Animals ; Bar codes ; Biodiversity ; Biology ; Deoxyribonucleic acid ; Diagnostic systems ; Divergence ; DNA ; DNA Barcoding, Taxonomic - methods ; DNA Barcoding, Taxonomic - standards ; Efficiency ; Electronic Data Processing - organization & administration ; Electronic Data Processing - standards ; Eriocraniidae ; Eupithecia ; Fauna ; Female ; Gene Library ; Gene sequencing ; Geometrid moths ; Geometridae ; Germany ; Insects ; Lepidoptera ; Lepidoptera - classification ; Lepidoptera - genetics ; Library collections ; Lycaenidae ; Male ; Mitochondrial DNA ; Noctuidae ; Olethreutinae ; Papilionidae ; Phylogeography ; Plusia ; Sequence Analysis, DNA ; Species ; Synonymy ; Taxa ; Taxonomy ; Tortricidae ; Validation Studies as Topic ; Zoology</subject><ispartof>PloS one, 2011-02, Vol.6 (2), p.e17134-e17134</ispartof><rights>COPYRIGHT 2011 Public Library of Science</rights><rights>2011 Hausmann et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Hausmann et al. 2011</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c624t-c4284996333b7b4aaec53afaccbd19e099016c3a1676c22ecd6d6f4392f24c103</citedby><cites>FETCH-LOGICAL-c624t-c4284996333b7b4aaec53afaccbd19e099016c3a1676c22ecd6d6f4392f24c103</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3040642/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3040642/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,729,782,786,866,887,2104,2930,23873,27931,27932,53798,53800</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21423340$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Steinke, Dirk</contributor><creatorcontrib>Hausmann, Axel</creatorcontrib><creatorcontrib>Haszprunar, Gerhard</creatorcontrib><creatorcontrib>Hebert, Paul D N</creatorcontrib><title>DNA barcoding the geometrid fauna of Bavaria (Lepidoptera): successes, surprises, and questions</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>The State of Bavaria is involved in a research program that will lead to the construction of a DNA barcode library for all animal species within its territorial boundaries. The present study provides a comprehensive DNA barcode library for the Geometridae, one of the most diverse of insect families.
This study reports DNA barcodes for 400 Bavarian geometrid species, 98 per cent of the known fauna, and approximately one per cent of all Bavarian animal species. Although 98.5% of these species possess diagnostic barcode sequences in Bavaria, records from neighbouring countries suggest that species-level resolution may be compromised in up to 3.5% of cases. All taxa which apparently share barcodes are discussed in detail. One case of modest divergence (1.4%) revealed a species overlooked by the current taxonomic system: Eupithecia goossensiata Mabille, 1869 stat.n. is raised from synonymy with Eupithecia absinthiata (Clerck, 1759) to species rank. Deep intraspecific sequence divergences (>2%) were detected in 20 traditionally recognized species.
The study emphasizes the effectiveness of DNA barcoding as a tool for monitoring biodiversity. Open access is provided to a data set that includes records for 1,395 geometrid specimens (331 species) from Bavaria, with 69 additional species from neighbouring regions. Taxa with deep intraspecific sequence divergences are undergoing more detailed analysis to ascertain if they represent cases of cryptic diversity.</description><subject>Agrodiaetus</subject><subject>Analysis</subject><subject>Animal species</subject><subject>Animals</subject><subject>Bar codes</subject><subject>Biodiversity</subject><subject>Biology</subject><subject>Deoxyribonucleic acid</subject><subject>Diagnostic systems</subject><subject>Divergence</subject><subject>DNA</subject><subject>DNA Barcoding, Taxonomic - methods</subject><subject>DNA Barcoding, Taxonomic - standards</subject><subject>Efficiency</subject><subject>Electronic Data Processing - organization & administration</subject><subject>Electronic Data Processing - standards</subject><subject>Eriocraniidae</subject><subject>Eupithecia</subject><subject>Fauna</subject><subject>Female</subject><subject>Gene Library</subject><subject>Gene sequencing</subject><subject>Geometrid moths</subject><subject>Geometridae</subject><subject>Germany</subject><subject>Insects</subject><subject>Lepidoptera</subject><subject>Lepidoptera - 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The present study provides a comprehensive DNA barcode library for the Geometridae, one of the most diverse of insect families.
This study reports DNA barcodes for 400 Bavarian geometrid species, 98 per cent of the known fauna, and approximately one per cent of all Bavarian animal species. Although 98.5% of these species possess diagnostic barcode sequences in Bavaria, records from neighbouring countries suggest that species-level resolution may be compromised in up to 3.5% of cases. All taxa which apparently share barcodes are discussed in detail. One case of modest divergence (1.4%) revealed a species overlooked by the current taxonomic system: Eupithecia goossensiata Mabille, 1869 stat.n. is raised from synonymy with Eupithecia absinthiata (Clerck, 1759) to species rank. Deep intraspecific sequence divergences (>2%) were detected in 20 traditionally recognized species.
The study emphasizes the effectiveness of DNA barcoding as a tool for monitoring biodiversity. Open access is provided to a data set that includes records for 1,395 geometrid specimens (331 species) from Bavaria, with 69 additional species from neighbouring regions. Taxa with deep intraspecific sequence divergences are undergoing more detailed analysis to ascertain if they represent cases of cryptic diversity.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>21423340</pmid><doi>10.1371/journal.pone.0017134</doi><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Public Library of Science (PLoS) Journals Open Access; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Agrodiaetus Analysis Animal species Animals Bar codes Biodiversity Biology Deoxyribonucleic acid Diagnostic systems Divergence DNA DNA Barcoding, Taxonomic - methods DNA Barcoding, Taxonomic - standards Efficiency Electronic Data Processing - organization & administration Electronic Data Processing - standards Eriocraniidae Eupithecia Fauna Female Gene Library Gene sequencing Geometrid moths Geometridae Germany Insects Lepidoptera Lepidoptera - classification Lepidoptera - genetics Library collections Lycaenidae Male Mitochondrial DNA Noctuidae Olethreutinae Papilionidae Phylogeography Plusia Sequence Analysis, DNA Species Synonymy Taxa Taxonomy Tortricidae Validation Studies as Topic Zoology |
| title | DNA barcoding the geometrid fauna of Bavaria (Lepidoptera): successes, surprises, and questions |
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