In silico simulation of corticosteroids effect on an NFkB- dependent physicochemical model of systemic inflammation
During the onset of an inflammatory response signaling pathways are activated for "translating" extracellular signals into intracellular responses converging to the activation of nuclear factor (NF)-kB, a central transcription factor in driving the inflammatory response. An inadequate cont...
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description | During the onset of an inflammatory response signaling pathways are activated for "translating" extracellular signals into intracellular responses converging to the activation of nuclear factor (NF)-kB, a central transcription factor in driving the inflammatory response. An inadequate control of its transcriptional activity is associated with the culmination of a hyper-inflammatory response making it a desired therapeutic target. Predicated upon the nature of the response, a systems level analysis might provide rational leads for the development of strategies that promote the resolution of the response.
A physicochemical host response model is proposed to integrate biological information in the form of kinetic rules and signaling cascades with pharmacokinetic models of drug action for the modulation of the response. The unifying hypothesis is that the response is triggered by the activation of the NFkB signaling module and corticosteroids serve as a template for assessing anti-inflammatory strategies. The proposed in silico model is evaluated through its ability to predict and modulate uncontrolled responses. The pre-exposure of the system to hypercortisolemia, i.e. 6 hr before or simultaneously with the infectious challenge "reprograms" the dynamics of the host towards a balanced inflammatory response. However, if such an intervention occurs long before the inflammatory insult a symptomatic effect is observed instead of a protective relief while a steroid infusion after inducing inflammation requires much higher drug doses.
We propose a reversed engineered inflammation model that seeks to describe how the system responds to a multitude of external signals. Timing of intervention and dosage regimes appears to be key determinants for the protective or symptomatic effect of exogenous corticosteroids. Such results lie in qualitative agreement with in vivo human studies exposed both to LPS and corticosteroids under various time intervals thus improving our understanding of how interacting modules generate a behavior. |
doi_str_mv | 10.1371/journal.pone.0004706 |
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A physicochemical host response model is proposed to integrate biological information in the form of kinetic rules and signaling cascades with pharmacokinetic models of drug action for the modulation of the response. The unifying hypothesis is that the response is triggered by the activation of the NFkB signaling module and corticosteroids serve as a template for assessing anti-inflammatory strategies. The proposed in silico model is evaluated through its ability to predict and modulate uncontrolled responses. The pre-exposure of the system to hypercortisolemia, i.e. 6 hr before or simultaneously with the infectious challenge "reprograms" the dynamics of the host towards a balanced inflammatory response. However, if such an intervention occurs long before the inflammatory insult a symptomatic effect is observed instead of a protective relief while a steroid infusion after inducing inflammation requires much higher drug doses.
We propose a reversed engineered inflammation model that seeks to describe how the system responds to a multitude of external signals. Timing of intervention and dosage regimes appears to be key determinants for the protective or symptomatic effect of exogenous corticosteroids. Such results lie in qualitative agreement with in vivo human studies exposed both to LPS and corticosteroids under various time intervals thus improving our understanding of how interacting modules generate a behavior.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0004706</identifier><identifier>PMID: 19274080</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Activation ; Adrenal Cortex Hormones - pharmacology ; Analysis ; Biomedical engineering ; Cascades ; Computational Biology/Systems Biology ; Computational Biology/Transcriptional Regulation ; Computer Simulation ; Corticoids ; Corticosteroid drugs ; Corticosteroids ; Cytokines ; Development strategies ; Enzymes ; Genes ; Health aspects ; Humans ; Immunology/Innate Immunity ; Immunology/Leukocyte Signaling and Gene Expression ; In vivo methods and tests ; Inflammation ; Inflammatory response ; Information processing ; Intervention ; Intracellular signalling ; Kinetics ; Lipopolysaccharides ; Liver ; Models, Biological ; NF-kappa B - physiology ; NF-κB protein ; Pharmacokinetics ; Pharmacology ; Physiology ; Proteins ; Qualitative analysis ; Rodents ; Signal Transduction ; Simulation ; Surgery ; Systemic Inflammatory Response Syndrome - drug therapy ; Time series</subject><ispartof>PloS one, 2009-03, Vol.4 (3), p.e4706</ispartof><rights>COPYRIGHT 2009 Public Library of Science</rights><rights>2009 Foteinou et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Foteinou et al. 2009</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c728t-87768e3a27f1e2de893156fcc3034186507ff656a6dd2ca4f8234391485572d73</citedby><cites>FETCH-LOGICAL-c728t-87768e3a27f1e2de893156fcc3034186507ff656a6dd2ca4f8234391485572d73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2651450/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2651450/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2102,2928,23866,27924,27925,53791,53793,79600,79601</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19274080$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Di Bernardo, Diego</contributor><creatorcontrib>Foteinou, Panagiota T</creatorcontrib><creatorcontrib>Calvano, Steve E</creatorcontrib><creatorcontrib>Lowry, Stephen F</creatorcontrib><creatorcontrib>Androulakis, Ioannis P</creatorcontrib><title>In silico simulation of corticosteroids effect on an NFkB- dependent physicochemical model of systemic inflammation</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>During the onset of an inflammatory response signaling pathways are activated for "translating" extracellular signals into intracellular responses converging to the activation of nuclear factor (NF)-kB, a central transcription factor in driving the inflammatory response. An inadequate control of its transcriptional activity is associated with the culmination of a hyper-inflammatory response making it a desired therapeutic target. Predicated upon the nature of the response, a systems level analysis might provide rational leads for the development of strategies that promote the resolution of the response.
A physicochemical host response model is proposed to integrate biological information in the form of kinetic rules and signaling cascades with pharmacokinetic models of drug action for the modulation of the response. The unifying hypothesis is that the response is triggered by the activation of the NFkB signaling module and corticosteroids serve as a template for assessing anti-inflammatory strategies. The proposed in silico model is evaluated through its ability to predict and modulate uncontrolled responses. The pre-exposure of the system to hypercortisolemia, i.e. 6 hr before or simultaneously with the infectious challenge "reprograms" the dynamics of the host towards a balanced inflammatory response. However, if such an intervention occurs long before the inflammatory insult a symptomatic effect is observed instead of a protective relief while a steroid infusion after inducing inflammation requires much higher drug doses.
We propose a reversed engineered inflammation model that seeks to describe how the system responds to a multitude of external signals. Timing of intervention and dosage regimes appears to be key determinants for the protective or symptomatic effect of exogenous corticosteroids. Such results lie in qualitative agreement with in vivo human studies exposed both to LPS and corticosteroids under various time intervals thus improving our understanding of how interacting modules generate a behavior.</description><subject>Activation</subject><subject>Adrenal Cortex Hormones - pharmacology</subject><subject>Analysis</subject><subject>Biomedical engineering</subject><subject>Cascades</subject><subject>Computational Biology/Systems Biology</subject><subject>Computational Biology/Transcriptional Regulation</subject><subject>Computer Simulation</subject><subject>Corticoids</subject><subject>Corticosteroid drugs</subject><subject>Corticosteroids</subject><subject>Cytokines</subject><subject>Development strategies</subject><subject>Enzymes</subject><subject>Genes</subject><subject>Health aspects</subject><subject>Humans</subject><subject>Immunology/Innate Immunity</subject><subject>Immunology/Leukocyte Signaling and Gene Expression</subject><subject>In vivo methods and tests</subject><subject>Inflammation</subject><subject>Inflammatory response</subject><subject>Information processing</subject><subject>Intervention</subject><subject>Intracellular signalling</subject><subject>Kinetics</subject><subject>Lipopolysaccharides</subject><subject>Liver</subject><subject>Models, Biological</subject><subject>NF-kappa B - 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An inadequate control of its transcriptional activity is associated with the culmination of a hyper-inflammatory response making it a desired therapeutic target. Predicated upon the nature of the response, a systems level analysis might provide rational leads for the development of strategies that promote the resolution of the response.
A physicochemical host response model is proposed to integrate biological information in the form of kinetic rules and signaling cascades with pharmacokinetic models of drug action for the modulation of the response. The unifying hypothesis is that the response is triggered by the activation of the NFkB signaling module and corticosteroids serve as a template for assessing anti-inflammatory strategies. The proposed in silico model is evaluated through its ability to predict and modulate uncontrolled responses. The pre-exposure of the system to hypercortisolemia, i.e. 6 hr before or simultaneously with the infectious challenge "reprograms" the dynamics of the host towards a balanced inflammatory response. However, if such an intervention occurs long before the inflammatory insult a symptomatic effect is observed instead of a protective relief while a steroid infusion after inducing inflammation requires much higher drug doses.
We propose a reversed engineered inflammation model that seeks to describe how the system responds to a multitude of external signals. Timing of intervention and dosage regimes appears to be key determinants for the protective or symptomatic effect of exogenous corticosteroids. Such results lie in qualitative agreement with in vivo human studies exposed both to LPS and corticosteroids under various time intervals thus improving our understanding of how interacting modules generate a behavior.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>19274080</pmid><doi>10.1371/journal.pone.0004706</doi><tpages>e4706</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Activation Adrenal Cortex Hormones - pharmacology Analysis Biomedical engineering Cascades Computational Biology/Systems Biology Computational Biology/Transcriptional Regulation Computer Simulation Corticoids Corticosteroid drugs Corticosteroids Cytokines Development strategies Enzymes Genes Health aspects Humans Immunology/Innate Immunity Immunology/Leukocyte Signaling and Gene Expression In vivo methods and tests Inflammation Inflammatory response Information processing Intervention Intracellular signalling Kinetics Lipopolysaccharides Liver Models, Biological NF-kappa B - physiology NF-κB protein Pharmacokinetics Pharmacology Physiology Proteins Qualitative analysis Rodents Signal Transduction Simulation Surgery Systemic Inflammatory Response Syndrome - drug therapy Time series |
title | In silico simulation of corticosteroids effect on an NFkB- dependent physicochemical model of systemic inflammation |
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