Gene-gene interactions lead to higher risk for development of type 2 diabetes in an Ashkenazi Jewish population

Evidence has accumulated that multiple genetic and environmental factors play important roles in determining susceptibility to type 2 diabetes (T2D). Although variants from candidate genes have become prime targets for genetic analysis, few studies have considered their interplay. Our goal was to ev...

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Veröffentlicht in:PloS one 2010-03, Vol.5 (3), p.e9903-e9903
Hauptverfasser: Neuman, Rosalind J, Wasson, Jon, Atzmon, Gil, Wainstein, Julio, Yerushalmi, Yair, Cohen, Joseph, Barzilai, Nir, Blech, Ilana, Glaser, Benjamin, Permutt, M Alan
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creator Neuman, Rosalind J
Wasson, Jon
Atzmon, Gil
Wainstein, Julio
Yerushalmi, Yair
Cohen, Joseph
Barzilai, Nir
Blech, Ilana
Glaser, Benjamin
Permutt, M Alan
description Evidence has accumulated that multiple genetic and environmental factors play important roles in determining susceptibility to type 2 diabetes (T2D). Although variants from candidate genes have become prime targets for genetic analysis, few studies have considered their interplay. Our goal was to evaluate interactions among SNPs within genes frequently identified as associated with T2D. Logistic regression was used to study interactions among 4 SNPs, one each from HNF4A[rs1884613], TCF7L2[rs12255372], WFS1[rs10010131], and KCNJ11[rs5219] in a case-control Ashkenazi sample of 974 diabetic subjects and 896 controls. Nonparametric multifactor dimensionality reduction (MDR) and generalized MDR (GMDR) were used to confirm findings from the logistic regression analysis. HNF4A and WFS1 SNPs were associated with T2D in logistic regression analyses [P
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Although variants from candidate genes have become prime targets for genetic analysis, few studies have considered their interplay. Our goal was to evaluate interactions among SNPs within genes frequently identified as associated with T2D. Logistic regression was used to study interactions among 4 SNPs, one each from HNF4A[rs1884613], TCF7L2[rs12255372], WFS1[rs10010131], and KCNJ11[rs5219] in a case-control Ashkenazi sample of 974 diabetic subjects and 896 controls. Nonparametric multifactor dimensionality reduction (MDR) and generalized MDR (GMDR) were used to confirm findings from the logistic regression analysis. HNF4A and WFS1 SNPs were associated with T2D in logistic regression analyses [P<0.0001, P<0.0002, respectively]. Interaction between these SNPs were also strong using parametric or nonparametric methods: the unadjusted odds of being affected with T2D was 3 times greater in subjects with the HNF4A and WFS1 risk alleles than those without either (95% CI = [1.7-5.3]; P<or=0.0001). Although the univariate association between the TCF7L2 SNP and T2D was relatively modest [P = 0.02], when paired with the HNF4A SNP, the OR for subjects with risk alleles in both SNPs was 2.4 [95% CI = 1.7-3.4; P<or=0.0001]. The KCNJ11 variant reached significance only when paired with either the HNF4A or WFSI SNPs: unadjusted ORs were 2.0 [95% CI = 1.4-2.8; P<or=0.0001] and 2.3 [95% CI = 1.2-4.4; P<or=0.0001], respectively. MDR and GMDR results were consistent with the parametric findings. These results provide evidence of strong independent associations between T2D and SNPs in HNF4A and WFS1 and their interaction in our Ashkenazi sample. We also observed an interaction in the nonparametric analysis between the HNF4A and KCNJ11 SNPs (P<or=0.001), demonstrating that an independently non-significant variant may interact with another variant resulting in an increased disease risk.]]></description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0009903</identifier><identifier>PMID: 20361036</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Adult ; Aged ; Alleles ; Apoptosis ; Case-Control Studies ; Committees ; Data mining ; Diabetes ; Diabetes mellitus ; Diabetes Mellitus, Type 2 - genetics ; Endocrinology ; Endoplasmic reticulum ; Environmental factors ; Female ; Gene Expression Profiling ; Gene loci ; Genes ; Genetic analysis ; Genetic aspects ; Genetic Predisposition to Disease ; Genetics ; Genetics and Genomics/Complex Traits ; Genetics and Genomics/Disease Models ; Genetics and Genomics/Genetics of Disease ; Genomes ; Health risks ; Hepatocyte Nuclear Factor 1-alpha - genetics ; Hepatocyte nuclear factor 4 ; Humans ; Hypoglycemia ; Identification methods ; Internal medicine ; Jews ; Male ; Medicine ; Membrane Proteins - genetics ; Metabolism ; Middle Aged ; Mutation ; Polymorphism, Single Nucleotide ; Population ; Regression analysis ; Risk ; Single nucleotide polymorphisms ; Single-nucleotide polymorphism ; Studies ; Type 2 diabetes</subject><ispartof>PloS one, 2010-03, Vol.5 (3), p.e9903-e9903</ispartof><rights>COPYRIGHT 2010 Public Library of Science</rights><rights>2010 Neuman et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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Although variants from candidate genes have become prime targets for genetic analysis, few studies have considered their interplay. Our goal was to evaluate interactions among SNPs within genes frequently identified as associated with T2D. Logistic regression was used to study interactions among 4 SNPs, one each from HNF4A[rs1884613], TCF7L2[rs12255372], WFS1[rs10010131], and KCNJ11[rs5219] in a case-control Ashkenazi sample of 974 diabetic subjects and 896 controls. Nonparametric multifactor dimensionality reduction (MDR) and generalized MDR (GMDR) were used to confirm findings from the logistic regression analysis. HNF4A and WFS1 SNPs were associated with T2D in logistic regression analyses [P<0.0001, P<0.0002, respectively]. 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We also observed an interaction in the nonparametric analysis between the HNF4A and KCNJ11 SNPs (P<or=0.001), demonstrating that an independently non-significant variant may interact with another variant resulting in an increased disease risk.]]></description><subject>Adult</subject><subject>Aged</subject><subject>Alleles</subject><subject>Apoptosis</subject><subject>Case-Control Studies</subject><subject>Committees</subject><subject>Data mining</subject><subject>Diabetes</subject><subject>Diabetes mellitus</subject><subject>Diabetes Mellitus, Type 2 - genetics</subject><subject>Endocrinology</subject><subject>Endoplasmic reticulum</subject><subject>Environmental factors</subject><subject>Female</subject><subject>Gene Expression Profiling</subject><subject>Gene loci</subject><subject>Genes</subject><subject>Genetic analysis</subject><subject>Genetic aspects</subject><subject>Genetic Predisposition to Disease</subject><subject>Genetics</subject><subject>Genetics and Genomics/Complex Traits</subject><subject>Genetics and Genomics/Disease Models</subject><subject>Genetics and Genomics/Genetics of Disease</subject><subject>Genomes</subject><subject>Health risks</subject><subject>Hepatocyte Nuclear Factor 1-alpha - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Neuman, Rosalind J</au><au>Wasson, Jon</au><au>Atzmon, Gil</au><au>Wainstein, Julio</au><au>Yerushalmi, Yair</au><au>Cohen, Joseph</au><au>Barzilai, Nir</au><au>Blech, Ilana</au><au>Glaser, Benjamin</au><au>Permutt, M Alan</au><au>Westermark, Per</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Gene-gene interactions lead to higher risk for development of type 2 diabetes in an Ashkenazi Jewish population</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2010-03-26</date><risdate>2010</risdate><volume>5</volume><issue>3</issue><spage>e9903</spage><epage>e9903</epage><pages>e9903-e9903</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract><![CDATA[Evidence has accumulated that multiple genetic and environmental factors play important roles in determining susceptibility to type 2 diabetes (T2D). Although variants from candidate genes have become prime targets for genetic analysis, few studies have considered their interplay. Our goal was to evaluate interactions among SNPs within genes frequently identified as associated with T2D. Logistic regression was used to study interactions among 4 SNPs, one each from HNF4A[rs1884613], TCF7L2[rs12255372], WFS1[rs10010131], and KCNJ11[rs5219] in a case-control Ashkenazi sample of 974 diabetic subjects and 896 controls. Nonparametric multifactor dimensionality reduction (MDR) and generalized MDR (GMDR) were used to confirm findings from the logistic regression analysis. HNF4A and WFS1 SNPs were associated with T2D in logistic regression analyses [P<0.0001, P<0.0002, respectively]. Interaction between these SNPs were also strong using parametric or nonparametric methods: the unadjusted odds of being affected with T2D was 3 times greater in subjects with the HNF4A and WFS1 risk alleles than those without either (95% CI = [1.7-5.3]; P<or=0.0001). Although the univariate association between the TCF7L2 SNP and T2D was relatively modest [P = 0.02], when paired with the HNF4A SNP, the OR for subjects with risk alleles in both SNPs was 2.4 [95% CI = 1.7-3.4; P<or=0.0001]. The KCNJ11 variant reached significance only when paired with either the HNF4A or WFSI SNPs: unadjusted ORs were 2.0 [95% CI = 1.4-2.8; P<or=0.0001] and 2.3 [95% CI = 1.2-4.4; P<or=0.0001], respectively. MDR and GMDR results were consistent with the parametric findings. These results provide evidence of strong independent associations between T2D and SNPs in HNF4A and WFS1 and their interaction in our Ashkenazi sample. We also observed an interaction in the nonparametric analysis between the HNF4A and KCNJ11 SNPs (P<or=0.001), demonstrating that an independently non-significant variant may interact with another variant resulting in an increased disease risk.]]></abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>20361036</pmid><doi>10.1371/journal.pone.0009903</doi><tpages>e9903</tpages><oa>free_for_read</oa></addata></record>
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1932-6203
language eng
recordid cdi_plos_journals_1289396411
source MEDLINE; DOAJ Directory of Open Access Journals; Public Library of Science (PLoS) Journals Open Access; EZB-FREE-00999 freely available EZB journals; PubMed Central; Free Full-Text Journals in Chemistry
subjects Adult
Aged
Alleles
Apoptosis
Case-Control Studies
Committees
Data mining
Diabetes
Diabetes mellitus
Diabetes Mellitus, Type 2 - genetics
Endocrinology
Endoplasmic reticulum
Environmental factors
Female
Gene Expression Profiling
Gene loci
Genes
Genetic analysis
Genetic aspects
Genetic Predisposition to Disease
Genetics
Genetics and Genomics/Complex Traits
Genetics and Genomics/Disease Models
Genetics and Genomics/Genetics of Disease
Genomes
Health risks
Hepatocyte Nuclear Factor 1-alpha - genetics
Hepatocyte nuclear factor 4
Humans
Hypoglycemia
Identification methods
Internal medicine
Jews
Male
Medicine
Membrane Proteins - genetics
Metabolism
Middle Aged
Mutation
Polymorphism, Single Nucleotide
Population
Regression analysis
Risk
Single nucleotide polymorphisms
Single-nucleotide polymorphism
Studies
Type 2 diabetes
title Gene-gene interactions lead to higher risk for development of type 2 diabetes in an Ashkenazi Jewish population
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