A flow cytometry-based FRET assay to identify and analyse protein-protein interactions in living cells

Försters resonance energy transfer (FRET) microscopy is widely used for the analysis of protein interactions in intact cells. However, FRET microscopy is technically challenging and does not allow assessing interactions in large cell numbers. To overcome these limitations we developed a flow cytomet...

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Veröffentlicht in:PloS one 2010-02, Vol.5 (2), p.e9344-e9344
Hauptverfasser: Banning, Carina, Votteler, Jörg, Hoffmann, Dirk, Koppensteiner, Herwig, Warmer, Martin, Reimer, Rudolph, Kirchhoff, Frank, Schubert, Ulrich, Hauber, Joachim, Schindler, Michael
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creator Banning, Carina
Votteler, Jörg
Hoffmann, Dirk
Koppensteiner, Herwig
Warmer, Martin
Reimer, Rudolph
Kirchhoff, Frank
Schubert, Ulrich
Hauber, Joachim
Schindler, Michael
description Försters resonance energy transfer (FRET) microscopy is widely used for the analysis of protein interactions in intact cells. However, FRET microscopy is technically challenging and does not allow assessing interactions in large cell numbers. To overcome these limitations we developed a flow cytometry-based FRET assay and analysed interactions of human and simian immunodeficiency virus (HIV and SIV) Nef and Vpu proteins with cellular factors, as well as HIV Rev multimer-formation. Amongst others, we characterize the interaction of Vpu with CD317 (also termed Bst-2 or tetherin), a host restriction factor that inhibits HIV release from infected cells and demonstrate that the direct binding of both is mediated by the Vpu membrane-spanning region. Furthermore, we adapted our assay to allow the identification of novel protein interaction partners in a high-throughput format. The presented combination of FRET and FACS offers the precious possibility to discover and define protein interactions in living cells and is expected to contribute to the identification of novel therapeutic targets for treatment of human diseases.
doi_str_mv 10.1371/journal.pone.0009344
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However, FRET microscopy is technically challenging and does not allow assessing interactions in large cell numbers. To overcome these limitations we developed a flow cytometry-based FRET assay and analysed interactions of human and simian immunodeficiency virus (HIV and SIV) Nef and Vpu proteins with cellular factors, as well as HIV Rev multimer-formation. Amongst others, we characterize the interaction of Vpu with CD317 (also termed Bst-2 or tetherin), a host restriction factor that inhibits HIV release from infected cells and demonstrate that the direct binding of both is mediated by the Vpu membrane-spanning region. Furthermore, we adapted our assay to allow the identification of novel protein interaction partners in a high-throughput format. The presented combination of FRET and FACS offers the precious possibility to discover and define protein interactions in living cells and is expected to contribute to the identification of novel therapeutic targets for treatment of human diseases.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>20179761</pmid><doi>10.1371/journal.pone.0009344</doi><tpages>e9344</tpages><oa>free_for_read</oa></addata></record>
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subjects Animals
Antigens, CD - genetics
Antigens, CD - metabolism
Assaying
Binding Sites - genetics
Biotechnology/Protein Chemistry and Proteomics
Cell Biology
Cell Line
Cells (biology)
Cloning
Cytometry
Energy transfer
Flow cytometry
Flow Cytometry - methods
Fluorescence resonance energy transfer
Fluorescence Resonance Energy Transfer - methods
Gene Products, nef - genetics
Gene Products, nef - metabolism
GPI-Linked Proteins
Health aspects
HeLa Cells
HIV
HIV-1 - metabolism
Human immunodeficiency virus
Human Immunodeficiency Virus Proteins - genetics
Human Immunodeficiency Virus Proteins - metabolism
Humans
Immunology
Immunoprecipitation
Infectious Diseases/HIV Infection and AIDS
Jurkat Cells
Luminescent Proteins - genetics
Luminescent Proteins - metabolism
Medical treatment
Membrane Glycoproteins - genetics
Membrane Glycoproteins - metabolism
Microscopy
Microscopy, Confocal
Mutation
Nef protein
Protein Binding
Protein interaction
Protein Interaction Mapping - methods
Protein-protein interactions
Proteins
Proteomics
Recombinant Fusion Proteins - genetics
Recombinant Fusion Proteins - metabolism
Simian Immunodeficiency Virus - metabolism
Studies
Target recognition
Transfection
Viral Proteins - genetics
Viral Proteins - metabolism
Viral Regulatory and Accessory Proteins - genetics
Viral Regulatory and Accessory Proteins - metabolism
Virology
Virology/Virulence Factors and Mechanisms
Viruses
title A flow cytometry-based FRET assay to identify and analyse protein-protein interactions in living cells
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