Gene expression signatures that predict radiation exposure in mice and humans
The capacity to assess environmental inputs to biological phenotypes is limited by methods that can accurately and quantitatively measure these contributions. One such example can be seen in the context of exposure to ionizing radiation. We have made use of gene expression analysis of peripheral blo...
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creator | Dressman, Holly K Muramoto, Garrett G Chao, Nelson J Meadows, Sarah Marshall, Dawn Ginsburg, Geoffrey S Nevins, Joseph R Chute, John P |
description | The capacity to assess environmental inputs to biological phenotypes is limited by methods that can accurately and quantitatively measure these contributions. One such example can be seen in the context of exposure to ionizing radiation.
We have made use of gene expression analysis of peripheral blood (PB) mononuclear cells to develop expression profiles that accurately reflect prior radiation exposure. We demonstrate that expression profiles can be developed that not only predict radiation exposure in mice but also distinguish the level of radiation exposure, ranging from 50 cGy to 1,000 cGy. Likewise, a molecular signature of radiation response developed solely from irradiated human patient samples can predict and distinguish irradiated human PB samples from nonirradiated samples with an accuracy of 90%, sensitivity of 85%, and specificity of 94%. We further demonstrate that a radiation profile developed in the mouse can correctly distinguish PB samples from irradiated and nonirradiated human patients with an accuracy of 77%, sensitivity of 82%, and specificity of 75%. Taken together, these data demonstrate that molecular profiles can be generated that are highly predictive of different levels of radiation exposure in mice and humans.
We suggest that this approach, with additional refinement, could provide a method to assess the effects of various environmental inputs into biological phenotypes as well as providing a more practical application of a rapid molecular screening test for the diagnosis of radiation exposure. |
doi_str_mv | 10.1371/journal.pmed.0040106 |
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We have made use of gene expression analysis of peripheral blood (PB) mononuclear cells to develop expression profiles that accurately reflect prior radiation exposure. We demonstrate that expression profiles can be developed that not only predict radiation exposure in mice but also distinguish the level of radiation exposure, ranging from 50 cGy to 1,000 cGy. Likewise, a molecular signature of radiation response developed solely from irradiated human patient samples can predict and distinguish irradiated human PB samples from nonirradiated samples with an accuracy of 90%, sensitivity of 85%, and specificity of 94%. We further demonstrate that a radiation profile developed in the mouse can correctly distinguish PB samples from irradiated and nonirradiated human patients with an accuracy of 77%, sensitivity of 82%, and specificity of 75%. Taken together, these data demonstrate that molecular profiles can be generated that are highly predictive of different levels of radiation exposure in mice and humans.
We suggest that this approach, with additional refinement, could provide a method to assess the effects of various environmental inputs into biological phenotypes as well as providing a more practical application of a rapid molecular screening test for the diagnosis of radiation exposure.</description><identifier>ISSN: 1549-1676</identifier><identifier>ISSN: 1549-1277</identifier><identifier>EISSN: 1549-1676</identifier><identifier>DOI: 10.1371/journal.pmed.0040106</identifier><identifier>PMID: 17407386</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Accuracy ; Animals ; Cell Biology ; Cosmic rays ; Cyclophosphamide - pharmacology ; Disease ; DNA - radiation effects ; DNA Damage ; Dose-Response Relationship, Radiation ; Emergency preparedness ; Encyclopedias ; Environmental Exposure ; Female ; Gene expression ; Gene Expression - radiation effects ; Gene Expression Profiling ; Gene Regulatory Networks - radiation effects ; Genes - radiation effects ; Genetic aspects ; Genetics ; Genetics and Genomics ; Humans ; Leukocytes, Mononuclear - radiation effects ; Mass Screening ; Medical research ; Mice ; Mice, Inbred C57BL ; Oligonucleotide Array Sequence Analysis ; Oncology ; Particle Accelerators ; Radiation ; Radiation Dosage ; Radiation Injuries, Experimental - blood ; Radiation Injuries, Experimental - genetics ; Radiation, Ionizing ; Radiotherapy ; Researchers ; Sensitivity and Specificity ; Single-Blind Method ; Species Specificity ; Transplantation Conditioning ; Vidarabine - analogs & derivatives ; Vidarabine - pharmacology ; Whole-Body Irradiation - adverse effects</subject><ispartof>PLoS medicine, 2007-04, Vol.4 (4), p.e106</ispartof><rights>COPYRIGHT 2007 Public Library of Science</rights><rights>2007 Dressman et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Dressman HK, Muramoto GG, Chao NJ, Meadows S, Marshall D, et al. (2007) Gene Expression Signatures That Predict Radiation Exposure in Mice and Humans. PLoS Med 4(4): e106. doi:10.1371/journal.pmed.0040106</rights><rights>2007 Dressman et al. 2007</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c734t-e9acdfc56bd285d2f489012ed4cbb8a451828d183db975ed11d5e7871e9783183</citedby><cites>FETCH-LOGICAL-c734t-e9acdfc56bd285d2f489012ed4cbb8a451828d183db975ed11d5e7871e9783183</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1845155/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1845155/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2102,2928,23866,27924,27925,53791,53793,79600,79601</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17407386$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Kemp, CHristopher</contributor><creatorcontrib>Dressman, Holly K</creatorcontrib><creatorcontrib>Muramoto, Garrett G</creatorcontrib><creatorcontrib>Chao, Nelson J</creatorcontrib><creatorcontrib>Meadows, Sarah</creatorcontrib><creatorcontrib>Marshall, Dawn</creatorcontrib><creatorcontrib>Ginsburg, Geoffrey S</creatorcontrib><creatorcontrib>Nevins, Joseph R</creatorcontrib><creatorcontrib>Chute, John P</creatorcontrib><title>Gene expression signatures that predict radiation exposure in mice and humans</title><title>PLoS medicine</title><addtitle>PLoS Med</addtitle><description>The capacity to assess environmental inputs to biological phenotypes is limited by methods that can accurately and quantitatively measure these contributions. One such example can be seen in the context of exposure to ionizing radiation.
We have made use of gene expression analysis of peripheral blood (PB) mononuclear cells to develop expression profiles that accurately reflect prior radiation exposure. We demonstrate that expression profiles can be developed that not only predict radiation exposure in mice but also distinguish the level of radiation exposure, ranging from 50 cGy to 1,000 cGy. Likewise, a molecular signature of radiation response developed solely from irradiated human patient samples can predict and distinguish irradiated human PB samples from nonirradiated samples with an accuracy of 90%, sensitivity of 85%, and specificity of 94%. We further demonstrate that a radiation profile developed in the mouse can correctly distinguish PB samples from irradiated and nonirradiated human patients with an accuracy of 77%, sensitivity of 82%, and specificity of 75%. Taken together, these data demonstrate that molecular profiles can be generated that are highly predictive of different levels of radiation exposure in mice and humans.
We suggest that this approach, with additional refinement, could provide a method to assess the effects of various environmental inputs into biological phenotypes as well as providing a more practical application of a rapid molecular screening test for the diagnosis of radiation exposure.</description><subject>Accuracy</subject><subject>Animals</subject><subject>Cell Biology</subject><subject>Cosmic rays</subject><subject>Cyclophosphamide - pharmacology</subject><subject>Disease</subject><subject>DNA - radiation effects</subject><subject>DNA Damage</subject><subject>Dose-Response Relationship, Radiation</subject><subject>Emergency preparedness</subject><subject>Encyclopedias</subject><subject>Environmental Exposure</subject><subject>Female</subject><subject>Gene expression</subject><subject>Gene Expression - radiation effects</subject><subject>Gene Expression Profiling</subject><subject>Gene Regulatory Networks - radiation effects</subject><subject>Genes - radiation effects</subject><subject>Genetic aspects</subject><subject>Genetics</subject><subject>Genetics and Genomics</subject><subject>Humans</subject><subject>Leukocytes, Mononuclear - radiation effects</subject><subject>Mass Screening</subject><subject>Medical research</subject><subject>Mice</subject><subject>Mice, Inbred C57BL</subject><subject>Oligonucleotide Array Sequence Analysis</subject><subject>Oncology</subject><subject>Particle Accelerators</subject><subject>Radiation</subject><subject>Radiation Dosage</subject><subject>Radiation Injuries, Experimental - blood</subject><subject>Radiation Injuries, Experimental - genetics</subject><subject>Radiation, Ionizing</subject><subject>Radiotherapy</subject><subject>Researchers</subject><subject>Sensitivity and Specificity</subject><subject>Single-Blind Method</subject><subject>Species Specificity</subject><subject>Transplantation Conditioning</subject><subject>Vidarabine - analogs & derivatives</subject><subject>Vidarabine - pharmacology</subject><subject>Whole-Body Irradiation - adverse effects</subject><issn>1549-1676</issn><issn>1549-1277</issn><issn>1549-1676</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>DOA</sourceid><recordid>eNqVk12L1DAUhoso7rr6D0QLguDFjEmbNumNsCy6Dqwu-HUbTpPTNkMnGZNU1n9vxqk6AysovUhz8pw3yXtysuwxJUtacvpy7SZvYVxuN6iXhDBCSX0nO6UVaxa05vXdg_-T7EEIa0KKhjTkfnZCOSO8FPVp9u4SLeZ4s_UYgnE2D6a3EKc0zeMAMU8L2qiYe9AG4o5IsAsJyI3NN0ZhDlbnw7QBGx5m9zoYAz6ax7Ps85vXny7eLq6uL1cX51cLxUsWF9iA0p2q6lYXotJFx0RDaIGaqbYVwCoqCqGpKHXb8Ao1pbpCLjjFhosyxc-yp3vd7eiCnJ0IkhZCEN4wUSZitSe0g7XcerMB_106MPJnwPlego9GjShLDQUDxUghkLFkmRak1BxKwXQNiiatV_NuU5vMVmijh_FI9HjFmkH27pukIl2lqpLAs1nAu68ThviXIy_2VA_pVMZ2LompPtUnaTqLnUnhc1pXDWWsJolf3sKnT2Mqy60JL44SEhPxJvYwhSBXHz_8B_v-39nrL8fs8wN2QBjjENw47V5WOAbZHlTeheCx--03JXLXAL88lLsGkHMDpLQnh7X6kzS_-PIH2XUAKg</recordid><startdate>20070401</startdate><enddate>20070401</enddate><creator>Dressman, Holly K</creator><creator>Muramoto, Garrett G</creator><creator>Chao, Nelson J</creator><creator>Meadows, Sarah</creator><creator>Marshall, Dawn</creator><creator>Ginsburg, Geoffrey S</creator><creator>Nevins, Joseph R</creator><creator>Chute, John P</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISN</scope><scope>ISR</scope><scope>3V.</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>5PM</scope><scope>DOA</scope><scope>CZK</scope></search><sort><creationdate>20070401</creationdate><title>Gene expression signatures that predict radiation exposure in mice and humans</title><author>Dressman, Holly K ; Muramoto, Garrett G ; Chao, Nelson J ; Meadows, Sarah ; Marshall, Dawn ; Ginsburg, Geoffrey S ; Nevins, Joseph R ; Chute, John P</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c734t-e9acdfc56bd285d2f489012ed4cbb8a451828d183db975ed11d5e7871e9783183</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Accuracy</topic><topic>Animals</topic><topic>Cell Biology</topic><topic>Cosmic rays</topic><topic>Cyclophosphamide - pharmacology</topic><topic>Disease</topic><topic>DNA - radiation effects</topic><topic>DNA Damage</topic><topic>Dose-Response Relationship, Radiation</topic><topic>Emergency preparedness</topic><topic>Encyclopedias</topic><topic>Environmental Exposure</topic><topic>Female</topic><topic>Gene expression</topic><topic>Gene Expression - radiation effects</topic><topic>Gene Expression Profiling</topic><topic>Gene Regulatory Networks - radiation effects</topic><topic>Genes - radiation effects</topic><topic>Genetic aspects</topic><topic>Genetics</topic><topic>Genetics and Genomics</topic><topic>Humans</topic><topic>Leukocytes, Mononuclear - radiation effects</topic><topic>Mass Screening</topic><topic>Medical research</topic><topic>Mice</topic><topic>Mice, Inbred C57BL</topic><topic>Oligonucleotide Array Sequence Analysis</topic><topic>Oncology</topic><topic>Particle Accelerators</topic><topic>Radiation</topic><topic>Radiation Dosage</topic><topic>Radiation Injuries, Experimental - blood</topic><topic>Radiation Injuries, Experimental - genetics</topic><topic>Radiation, Ionizing</topic><topic>Radiotherapy</topic><topic>Researchers</topic><topic>Sensitivity and Specificity</topic><topic>Single-Blind Method</topic><topic>Species Specificity</topic><topic>Transplantation Conditioning</topic><topic>Vidarabine - analogs & derivatives</topic><topic>Vidarabine - pharmacology</topic><topic>Whole-Body Irradiation - adverse effects</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Dressman, Holly K</creatorcontrib><creatorcontrib>Muramoto, Garrett G</creatorcontrib><creatorcontrib>Chao, Nelson J</creatorcontrib><creatorcontrib>Meadows, Sarah</creatorcontrib><creatorcontrib>Marshall, Dawn</creatorcontrib><creatorcontrib>Ginsburg, Geoffrey S</creatorcontrib><creatorcontrib>Nevins, Joseph R</creatorcontrib><creatorcontrib>Chute, John P</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Canada</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Access via ProQuest (Open Access)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><collection>PLoS Medicine</collection><jtitle>PLoS medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Dressman, Holly K</au><au>Muramoto, Garrett G</au><au>Chao, Nelson J</au><au>Meadows, Sarah</au><au>Marshall, Dawn</au><au>Ginsburg, Geoffrey S</au><au>Nevins, Joseph R</au><au>Chute, John P</au><au>Kemp, CHristopher</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Gene expression signatures that predict radiation exposure in mice and humans</atitle><jtitle>PLoS medicine</jtitle><addtitle>PLoS Med</addtitle><date>2007-04-01</date><risdate>2007</risdate><volume>4</volume><issue>4</issue><spage>e106</spage><pages>e106-</pages><issn>1549-1676</issn><issn>1549-1277</issn><eissn>1549-1676</eissn><abstract>The capacity to assess environmental inputs to biological phenotypes is limited by methods that can accurately and quantitatively measure these contributions. One such example can be seen in the context of exposure to ionizing radiation.
We have made use of gene expression analysis of peripheral blood (PB) mononuclear cells to develop expression profiles that accurately reflect prior radiation exposure. We demonstrate that expression profiles can be developed that not only predict radiation exposure in mice but also distinguish the level of radiation exposure, ranging from 50 cGy to 1,000 cGy. Likewise, a molecular signature of radiation response developed solely from irradiated human patient samples can predict and distinguish irradiated human PB samples from nonirradiated samples with an accuracy of 90%, sensitivity of 85%, and specificity of 94%. We further demonstrate that a radiation profile developed in the mouse can correctly distinguish PB samples from irradiated and nonirradiated human patients with an accuracy of 77%, sensitivity of 82%, and specificity of 75%. Taken together, these data demonstrate that molecular profiles can be generated that are highly predictive of different levels of radiation exposure in mice and humans.
We suggest that this approach, with additional refinement, could provide a method to assess the effects of various environmental inputs into biological phenotypes as well as providing a more practical application of a rapid molecular screening test for the diagnosis of radiation exposure.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>17407386</pmid><doi>10.1371/journal.pmed.0040106</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Accuracy Animals Cell Biology Cosmic rays Cyclophosphamide - pharmacology Disease DNA - radiation effects DNA Damage Dose-Response Relationship, Radiation Emergency preparedness Encyclopedias Environmental Exposure Female Gene expression Gene Expression - radiation effects Gene Expression Profiling Gene Regulatory Networks - radiation effects Genes - radiation effects Genetic aspects Genetics Genetics and Genomics Humans Leukocytes, Mononuclear - radiation effects Mass Screening Medical research Mice Mice, Inbred C57BL Oligonucleotide Array Sequence Analysis Oncology Particle Accelerators Radiation Radiation Dosage Radiation Injuries, Experimental - blood Radiation Injuries, Experimental - genetics Radiation, Ionizing Radiotherapy Researchers Sensitivity and Specificity Single-Blind Method Species Specificity Transplantation Conditioning Vidarabine - analogs & derivatives Vidarabine - pharmacology Whole-Body Irradiation - adverse effects |
title | Gene expression signatures that predict radiation exposure in mice and humans |
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